Strain Fitness in Sphingomonas koreensis DSMZ 15582 around Ga0059261_0566

Experiment: A22 0.01 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGa0059261_0565 and Ga0059261_0566 overlap by 1 nucleotidesGa0059261_0566 and Ga0059261_0567 are separated by 46 nucleotides Ga0059261_0565: Ga0059261_0565 - Carboxylesterase type B, at 583,680 to 585,218 _0565 Ga0059261_0566: Ga0059261_0566 - Uncharacterized protein conserved in bacteria, at 585,218 to 586,990 _0566 Ga0059261_0567: Ga0059261_0567 - Uncharacterized conserved protein, at 587,037 to 589,178 _0567 Position (kb) 585 586 587Strain fitness (log2 ratio) -2 -1 0 1 2at 584.231 kb on + strand, within Ga0059261_0565at 584.231 kb on + strand, within Ga0059261_0565at 584.232 kb on - strand, within Ga0059261_0565at 584.363 kb on + strand, within Ga0059261_0565at 584.364 kb on - strand, within Ga0059261_0565at 584.364 kb on - strand, within Ga0059261_0565at 584.365 kb on + strand, within Ga0059261_0565at 584.365 kb on + strand, within Ga0059261_0565at 584.365 kb on + strand, within Ga0059261_0565at 584.365 kb on + strand, within Ga0059261_0565at 584.365 kb on + strand, within Ga0059261_0565at 584.365 kb on + strand, within Ga0059261_0565at 584.365 kb on + strand, within Ga0059261_0565at 584.366 kb on - strand, within Ga0059261_0565at 584.366 kb on - strand, within Ga0059261_0565at 584.366 kb on - strand, within Ga0059261_0565at 584.366 kb on - strand, within Ga0059261_0565at 584.366 kb on - strand, within Ga0059261_0565at 584.366 kb on - strand, within Ga0059261_0565at 584.366 kb on - strand, within Ga0059261_0565at 584.366 kb on - strand, within Ga0059261_0565at 584.366 kb on - strand, within Ga0059261_0565at 584.366 kb on - strand, within Ga0059261_0565at 584.366 kb on - strand, within Ga0059261_0565at 584.479 kb on + strand, within Ga0059261_0565at 584.479 kb on + strand, within Ga0059261_0565at 584.480 kb on - strand, within Ga0059261_0565at 584.480 kb on - strand, within Ga0059261_0565at 584.753 kb on - strand, within Ga0059261_0565at 584.753 kb on - strand, within Ga0059261_0565at 584.753 kb on - strand, within Ga0059261_0565at 584.758 kb on + strand, within Ga0059261_0565at 584.759 kb on - strand, within Ga0059261_0565at 584.860 kb on + strand, within Ga0059261_0565at 584.860 kb on + strand, within Ga0059261_0565at 584.861 kb on - strand, within Ga0059261_0565at 584.878 kb on + strand, within Ga0059261_0565at 584.878 kb on + strand, within Ga0059261_0565at 584.878 kb on + strand, within Ga0059261_0565at 584.878 kb on + strand, within Ga0059261_0565at 584.878 kb on + strand, within Ga0059261_0565at 584.878 kb on + strand, within Ga0059261_0565at 584.878 kb on + strand, within Ga0059261_0565at 584.878 kb on + strand, within Ga0059261_0565at 584.878 kb on + strand, within Ga0059261_0565at 584.878 kb on + strand, within Ga0059261_0565at 584.878 kb on + strandat 584.879 kb on - strand, within Ga0059261_0565at 584.879 kb on - strand, within Ga0059261_0565at 584.879 kb on - strand, within Ga0059261_0565at 584.879 kb on - strandat 584.879 kb on - strand, within Ga0059261_0565at 584.879 kb on - strand, within Ga0059261_0565at 584.879 kb on - strand, within Ga0059261_0565at 584.962 kb on + strand, within Ga0059261_0565at 584.962 kb on + strand, within Ga0059261_0565at 584.963 kb on - strand, within Ga0059261_0565at 585.036 kb on - strand, within Ga0059261_0565at 585.036 kb on - strand, within Ga0059261_0565at 585.064 kb on + strand, within Ga0059261_0565at 585.456 kb on + strand, within Ga0059261_0566at 585.457 kb on - strand, within Ga0059261_0566at 585.457 kb on - strand, within Ga0059261_0566at 585.462 kb on + strand, within Ga0059261_0566at 585.462 kb on + strand, within Ga0059261_0566at 585.463 kb on - strand, within Ga0059261_0566at 585.463 kb on - strand, within Ga0059261_0566at 585.609 kb on + strand, within Ga0059261_0566at 585.610 kb on - strand, within Ga0059261_0566at 585.610 kb on - strand, within Ga0059261_0566at 585.855 kb on + strand, within Ga0059261_0566at 585.915 kb on + strand, within Ga0059261_0566at 585.915 kb on + strand, within Ga0059261_0566at 585.915 kb on + strand, within Ga0059261_0566at 585.916 kb on - strand, within Ga0059261_0566at 585.916 kb on - strand, within Ga0059261_0566at 585.951 kb on + strand, within Ga0059261_0566at 585.951 kb on + strand, within Ga0059261_0566at 585.952 kb on - strand, within Ga0059261_0566at 585.952 kb on - strand, within Ga0059261_0566at 585.954 kb on + strand, within Ga0059261_0566at 585.954 kb on + strand, within Ga0059261_0566at 585.954 kb on + strand, within Ga0059261_0566at 585.955 kb on - strand, within Ga0059261_0566at 585.955 kb on - strand, within Ga0059261_0566at 585.955 kb on - strand, within Ga0059261_0566at 585.955 kb on - strand, within Ga0059261_0566at 585.955 kb on - strand, within Ga0059261_0566at 585.955 kb on - strand, within Ga0059261_0566at 585.955 kb on - strand, within Ga0059261_0566at 586.000 kb on + strand, within Ga0059261_0566at 586.000 kb on + strand, within Ga0059261_0566at 586.000 kb on + strandat 586.000 kb on + strandat 586.000 kb on + strand, within Ga0059261_0566at 586.001 kb on - strand, within Ga0059261_0566at 586.001 kb on - strand, within Ga0059261_0566at 586.001 kb on - strand, within Ga0059261_0566at 586.001 kb on - strand, within Ga0059261_0566at 586.001 kb on - strand, within Ga0059261_0566at 586.002 kb on + strand, within Ga0059261_0566at 586.003 kb on - strand, within Ga0059261_0566at 586.003 kb on - strand, within Ga0059261_0566at 586.003 kb on - strand, within Ga0059261_0566at 586.003 kb on - strand, within Ga0059261_0566at 586.104 kb on + strand, within Ga0059261_0566at 586.104 kb on + strand, within Ga0059261_0566at 586.104 kb on + strand, within Ga0059261_0566at 586.104 kb on + strand, within Ga0059261_0566at 586.104 kb on + strand, within Ga0059261_0566at 586.105 kb on - strand, within Ga0059261_0566at 586.105 kb on - strand, within Ga0059261_0566at 586.105 kb on - strand, within Ga0059261_0566at 586.239 kb on + strand, within Ga0059261_0566at 586.239 kb on + strand, within Ga0059261_0566at 586.239 kb on + strand, within Ga0059261_0566at 586.239 kb on + strand, within Ga0059261_0566at 586.239 kb on + strand, within Ga0059261_0566at 586.239 kb on + strand, within Ga0059261_0566at 586.239 kb on + strand, within Ga0059261_0566at 586.239 kb on + strand, within Ga0059261_0566at 586.239 kb on + strand, within Ga0059261_0566at 586.239 kb on + strand, within Ga0059261_0566at 586.240 kb on - strand, within Ga0059261_0566at 586.240 kb on - strand, within Ga0059261_0566at 586.240 kb on - strand, within Ga0059261_0566at 586.240 kb on - strand, within Ga0059261_0566at 586.240 kb on - strand, within Ga0059261_0566at 586.240 kb on - strand, within Ga0059261_0566at 586.240 kb on - strand, within Ga0059261_0566at 586.240 kb on - strand, within Ga0059261_0566at 586.302 kb on + strand, within Ga0059261_0566at 586.302 kb on + strand, within Ga0059261_0566at 586.303 kb on - strand, within Ga0059261_0566at 586.303 kb on - strand, within Ga0059261_0566at 586.303 kb on - strand, within Ga0059261_0566at 586.366 kb on + strand, within Ga0059261_0566at 586.416 kb on + strand, within Ga0059261_0566at 586.417 kb on - strand, within Ga0059261_0566at 586.417 kb on - strand, within Ga0059261_0566at 586.417 kb on - strand, within Ga0059261_0566at 586.440 kb on + strand, within Ga0059261_0566at 586.441 kb on - strandat 586.441 kb on - strand, within Ga0059261_0566at 586.441 kb on - strand, within Ga0059261_0566at 586.441 kb on - strand, within Ga0059261_0566at 586.441 kb on - strand, within Ga0059261_0566at 586.572 kb on + strand, within Ga0059261_0566at 586.572 kb on + strand, within Ga0059261_0566at 586.572 kb on + strand, within Ga0059261_0566at 586.572 kb on + strand, within Ga0059261_0566at 586.572 kb on + strand, within Ga0059261_0566at 586.572 kb on + strand, within Ga0059261_0566at 586.572 kb on + strand, within Ga0059261_0566at 586.573 kb on - strand, within Ga0059261_0566at 586.573 kb on - strand, within Ga0059261_0566at 586.573 kb on - strand, within Ga0059261_0566at 586.573 kb on - strand, within Ga0059261_0566at 586.722 kb on + strand, within Ga0059261_0566at 586.722 kb on + strand, within Ga0059261_0566at 586.722 kb on + strand, within Ga0059261_0566at 586.723 kb on - strand, within Ga0059261_0566at 586.723 kb on - strand, within Ga0059261_0566at 586.723 kb on - strand, within Ga0059261_0566at 586.723 kb on - strand, within Ga0059261_0566at 586.734 kb on + strand, within Ga0059261_0566at 586.735 kb on - strand, within Ga0059261_0566at 586.801 kb on + strand, within Ga0059261_0566at 586.801 kb on + strand, within Ga0059261_0566at 586.802 kb on - strand, within Ga0059261_0566at 586.863 kb on + strandat 586.864 kb on - strandat 586.949 kb on + strandat 587.104 kb on + strandat 587.104 kb on + strandat 587.104 kb on + strandat 587.105 kb on - strandat 587.105 kb on - strandat 587.105 kb on - strandat 587.105 kb on - strandat 587.105 kb on - strandat 587.129 kb on - strandat 587.167 kb on + strandat 587.168 kb on - strandat 587.215 kb on + strandat 587.371 kb on + strand, within Ga0059261_0567at 587.371 kb on + strand, within Ga0059261_0567at 587.371 kb on + strand, within Ga0059261_0567at 587.372 kb on - strand, within Ga0059261_0567at 587.401 kb on + strand, within Ga0059261_0567at 587.401 kb on + strand, within Ga0059261_0567at 587.402 kb on - strand, within Ga0059261_0567at 587.402 kb on - strand, within Ga0059261_0567at 587.449 kb on + strand, within Ga0059261_0567at 587.449 kb on + strand, within Ga0059261_0567at 587.449 kb on + strand, within Ga0059261_0567at 587.450 kb on - strand, within Ga0059261_0567at 587.450 kb on - strand, within Ga0059261_0567at 587.681 kb on - strand, within Ga0059261_0567at 587.681 kb on - strand, within Ga0059261_0567at 587.687 kb on + strand, within Ga0059261_0567at 587.730 kb on + strand, within Ga0059261_0567

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Per-strain Table

Position Strand Gene LocusTag Fraction A22 0.01 mg/ml
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584,231 + Ga0059261_0565 0.36 +0.1
584,231 + Ga0059261_0565 0.36 -0.4
584,232 - Ga0059261_0565 0.36 +0.5
584,363 + Ga0059261_0565 0.44 -0.9
584,364 - Ga0059261_0565 0.44 -0.1
584,364 - Ga0059261_0565 0.44 +0.1
584,365 + Ga0059261_0565 0.45 +0.4
584,365 + Ga0059261_0565 0.45 -0.2
584,365 + Ga0059261_0565 0.45 -0.2
584,365 + Ga0059261_0565 0.45 -0.4
584,365 + Ga0059261_0565 0.45 +1.2
584,365 + Ga0059261_0565 0.45 -0.1
584,365 + Ga0059261_0565 0.45 -0.5
584,366 - Ga0059261_0565 0.45 +0.3
584,366 - Ga0059261_0565 0.45 +0.7
584,366 - Ga0059261_0565 0.45 -1.0
584,366 - Ga0059261_0565 0.45 -0.9
584,366 - Ga0059261_0565 0.45 +0.3
584,366 - Ga0059261_0565 0.45 +1.7
584,366 - Ga0059261_0565 0.45 +0.1
584,366 - Ga0059261_0565 0.45 +0.6
584,366 - Ga0059261_0565 0.45 -0.2
584,366 - Ga0059261_0565 0.45 +0.1
584,366 - Ga0059261_0565 0.45 +0.9
584,479 + Ga0059261_0565 0.52 -0.6
584,479 + Ga0059261_0565 0.52 +0.1
584,480 - Ga0059261_0565 0.52 +0.1
584,480 - Ga0059261_0565 0.52 +0.9
584,753 - Ga0059261_0565 0.70 -0.4
584,753 - Ga0059261_0565 0.70 +0.3
584,753 - Ga0059261_0565 0.70 +0.2
584,758 + Ga0059261_0565 0.70 +0.4
584,759 - Ga0059261_0565 0.70 +0.4
584,860 + Ga0059261_0565 0.77 +0.3
584,860 + Ga0059261_0565 0.77 -0.0
584,861 - Ga0059261_0565 0.77 -0.3
584,878 + Ga0059261_0565 0.78 +0.4
584,878 + Ga0059261_0565 0.78 +0.8
584,878 + Ga0059261_0565 0.78 +0.1
584,878 + Ga0059261_0565 0.78 +0.6
584,878 + Ga0059261_0565 0.78 +0.1
584,878 + Ga0059261_0565 0.78 -0.3
584,878 + Ga0059261_0565 0.78 -0.3
584,878 + Ga0059261_0565 0.78 -0.4
584,878 + Ga0059261_0565 0.78 -0.2
584,878 + Ga0059261_0565 0.78 +0.3
584,878 + -0.5
584,879 - Ga0059261_0565 0.78 +0.1
584,879 - Ga0059261_0565 0.78 -1.2
584,879 - Ga0059261_0565 0.78 +0.1
584,879 - -0.9
584,879 - Ga0059261_0565 0.78 +0.5
584,879 - Ga0059261_0565 0.78 -0.1
584,879 - Ga0059261_0565 0.78 +0.8
584,962 + Ga0059261_0565 0.83 +0.8
584,962 + Ga0059261_0565 0.83 -0.1
584,963 - Ga0059261_0565 0.83 +0.2
585,036 - Ga0059261_0565 0.88 +0.7
585,036 - Ga0059261_0565 0.88 +0.7
585,064 + Ga0059261_0565 0.90 +0.0
585,456 + Ga0059261_0566 0.13 -1.2
585,457 - Ga0059261_0566 0.13 -0.9
585,457 - Ga0059261_0566 0.13 +0.4
585,462 + Ga0059261_0566 0.14 -0.7
585,462 + Ga0059261_0566 0.14 +2.1
585,463 - Ga0059261_0566 0.14 +1.1
585,463 - Ga0059261_0566 0.14 +2.0
585,609 + Ga0059261_0566 0.22 +0.2
585,610 - Ga0059261_0566 0.22 -0.7
585,610 - Ga0059261_0566 0.22 +0.4
585,855 + Ga0059261_0566 0.36 +0.9
585,915 + Ga0059261_0566 0.39 +0.0
585,915 + Ga0059261_0566 0.39 +0.1
585,915 + Ga0059261_0566 0.39 +0.3
585,916 - Ga0059261_0566 0.39 +0.9
585,916 - Ga0059261_0566 0.39 +0.2
585,951 + Ga0059261_0566 0.41 +1.1
585,951 + Ga0059261_0566 0.41 +0.5
585,952 - Ga0059261_0566 0.41 -0.4
585,952 - Ga0059261_0566 0.41 -0.5
585,954 + Ga0059261_0566 0.42 +1.1
585,954 + Ga0059261_0566 0.42 +0.5
585,954 + Ga0059261_0566 0.42 -0.4
585,955 - Ga0059261_0566 0.42 -0.5
585,955 - Ga0059261_0566 0.42 -0.1
585,955 - Ga0059261_0566 0.42 -0.3
585,955 - Ga0059261_0566 0.42 +1.0
585,955 - Ga0059261_0566 0.42 -0.5
585,955 - Ga0059261_0566 0.42 -0.0
585,955 - Ga0059261_0566 0.42 -0.3
586,000 + Ga0059261_0566 0.44 +0.8
586,000 + Ga0059261_0566 0.44 +0.6
586,000 + -1.5
586,000 + -0.5
586,000 + Ga0059261_0566 0.44 -0.7
586,001 - Ga0059261_0566 0.44 +0.8
586,001 - Ga0059261_0566 0.44 +0.2
586,001 - Ga0059261_0566 0.44 +0.1
586,001 - Ga0059261_0566 0.44 -1.2
586,001 - Ga0059261_0566 0.44 -0.8
586,002 + Ga0059261_0566 0.44 +1.1
586,003 - Ga0059261_0566 0.44 -0.6
586,003 - Ga0059261_0566 0.44 +0.8
586,003 - Ga0059261_0566 0.44 -0.3
586,003 - Ga0059261_0566 0.44 -2.2
586,104 + Ga0059261_0566 0.50 -0.1
586,104 + Ga0059261_0566 0.50 -0.3
586,104 + Ga0059261_0566 0.50 -0.2
586,104 + Ga0059261_0566 0.50 -2.1
586,104 + Ga0059261_0566 0.50 -0.5
586,105 - Ga0059261_0566 0.50 +0.1
586,105 - Ga0059261_0566 0.50 +0.1
586,105 - Ga0059261_0566 0.50 -1.1
586,239 + Ga0059261_0566 0.58 +0.2
586,239 + Ga0059261_0566 0.58 +1.3
586,239 + Ga0059261_0566 0.58 +0.5
586,239 + Ga0059261_0566 0.58 +1.4
586,239 + Ga0059261_0566 0.58 +0.3
586,239 + Ga0059261_0566 0.58 -1.1
586,239 + Ga0059261_0566 0.58 -0.0
586,239 + Ga0059261_0566 0.58 -0.3
586,239 + Ga0059261_0566 0.58 -0.5
586,239 + Ga0059261_0566 0.58 +0.2
586,240 - Ga0059261_0566 0.58 -0.5
586,240 - Ga0059261_0566 0.58 -0.1
586,240 - Ga0059261_0566 0.58 -0.8
586,240 - Ga0059261_0566 0.58 +0.4
586,240 - Ga0059261_0566 0.58 +0.2
586,240 - Ga0059261_0566 0.58 -0.0
586,240 - Ga0059261_0566 0.58 +0.1
586,240 - Ga0059261_0566 0.58 +0.3
586,302 + Ga0059261_0566 0.61 +0.2
586,302 + Ga0059261_0566 0.61 +0.7
586,303 - Ga0059261_0566 0.61 +0.3
586,303 - Ga0059261_0566 0.61 +1.4
586,303 - Ga0059261_0566 0.61 +0.5
586,366 + Ga0059261_0566 0.65 +0.5
586,416 + Ga0059261_0566 0.68 -0.1
586,417 - Ga0059261_0566 0.68 +0.4
586,417 - Ga0059261_0566 0.68 +1.7
586,417 - Ga0059261_0566 0.68 +0.2
586,440 + Ga0059261_0566 0.69 +0.6
586,441 - -0.5
586,441 - Ga0059261_0566 0.69 -0.3
586,441 - Ga0059261_0566 0.69 -0.5
586,441 - Ga0059261_0566 0.69 -0.0
586,441 - Ga0059261_0566 0.69 -0.2
586,572 + Ga0059261_0566 0.76 +0.8
586,572 + Ga0059261_0566 0.76 -0.4
586,572 + Ga0059261_0566 0.76 +0.8
586,572 + Ga0059261_0566 0.76 -1.0
586,572 + Ga0059261_0566 0.76 -0.3
586,572 + Ga0059261_0566 0.76 +0.2
586,572 + Ga0059261_0566 0.76 +0.2
586,573 - Ga0059261_0566 0.76 -0.0
586,573 - Ga0059261_0566 0.76 -0.2
586,573 - Ga0059261_0566 0.76 -0.2
586,573 - Ga0059261_0566 0.76 -0.1
586,722 + Ga0059261_0566 0.85 -0.5
586,722 + Ga0059261_0566 0.85 +0.8
586,722 + Ga0059261_0566 0.85 -0.3
586,723 - Ga0059261_0566 0.85 +0.4
586,723 - Ga0059261_0566 0.85 +1.7
586,723 - Ga0059261_0566 0.85 +0.0
586,723 - Ga0059261_0566 0.85 -0.5
586,734 + Ga0059261_0566 0.86 -0.1
586,735 - Ga0059261_0566 0.86 -1.0
586,801 + Ga0059261_0566 0.89 +0.1
586,801 + Ga0059261_0566 0.89 +0.2
586,802 - Ga0059261_0566 0.89 +0.5
586,863 + -0.3
586,864 - +0.1
586,949 + +0.7
587,104 + -1.1
587,104 + +0.1
587,104 + +0.6
587,105 - -0.0
587,105 - -1.2
587,105 - -0.3
587,105 - -0.1
587,105 - +0.9
587,129 - +0.1
587,167 + -2.5
587,168 - -1.2
587,215 + -1.0
587,371 + Ga0059261_0567 0.16 -0.9
587,371 + Ga0059261_0567 0.16 -0.4
587,371 + Ga0059261_0567 0.16 -0.6
587,372 - Ga0059261_0567 0.16 -1.6
587,401 + Ga0059261_0567 0.17 +0.1
587,401 + Ga0059261_0567 0.17 -0.8
587,402 - Ga0059261_0567 0.17 -0.5
587,402 - Ga0059261_0567 0.17 +1.1
587,449 + Ga0059261_0567 0.19 -0.0
587,449 + Ga0059261_0567 0.19 +0.2
587,449 + Ga0059261_0567 0.19 +0.9
587,450 - Ga0059261_0567 0.19 +1.1
587,450 - Ga0059261_0567 0.19 +1.1
587,681 - Ga0059261_0567 0.30 -0.0
587,681 - Ga0059261_0567 0.30 +0.3
587,687 + Ga0059261_0567 0.30 +0.4
587,730 + Ga0059261_0567 0.32 -0.5

Or see this region's nucleotide sequence