Experiment: A22 0.01 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Ga0059261_0446 and Ga0059261_0447 are separated by 143 nucleotides Ga0059261_0447 and Ga0059261_0448 are separated by 140 nucleotides Ga0059261_0448 and Ga0059261_0449 are separated by 128 nucleotides Ga0059261_0449 and Ga0059261_0450 are separated by 3 nucleotides
Ga0059261_0446: Ga0059261_0446 - Outer membrane receptor proteins, mostly Fe transport, at 431,540 to 433,660
_0446
Ga0059261_0447: Ga0059261_0447 - SnoaL-like domain, at 433,804 to 434,274
_0447
Ga0059261_0448: Ga0059261_0448 - hypothetical protein, at 434,415 to 434,702
_0448
Ga0059261_0449: Ga0059261_0449 - Uncharacterized protein, homolog of Cu resistance protein CopC, at 434,831 to 435,217
_0449
Ga0059261_0450: Ga0059261_0450 - Putative copper export protein, at 435,221 to 436,143
_0450
Position (kb) 434
435 Strain fitness (log2 ratio) -2
-1
0
1
2 at 433.439 kb on + strand, within Ga0059261_0446 at 433.439 kb on + strand at 433.439 kb on + strand at 433.440 kb on - strand, within Ga0059261_0446 at 433.440 kb on - strand, within Ga0059261_0446 at 433.440 kb on - strand, within Ga0059261_0446 at 433.517 kb on + strand at 433.517 kb on + strand at 433.517 kb on + strand at 433.517 kb on + strand at 433.517 kb on + strand at 433.517 kb on + strand at 433.517 kb on + strand at 433.517 kb on + strand at 433.518 kb on - strand at 433.518 kb on - strand at 433.518 kb on - strand at 433.518 kb on - strand at 433.553 kb on + strand at 433.553 kb on + strand at 433.553 kb on + strand at 433.554 kb on - strand at 433.613 kb on + strand at 433.614 kb on - strand at 433.614 kb on - strand at 433.614 kb on - strand at 433.614 kb on - strand at 433.614 kb on - strand at 433.631 kb on + strand at 433.631 kb on + strand at 433.632 kb on - strand at 433.649 kb on + strand at 433.649 kb on + strand at 433.935 kb on + strand, within Ga0059261_0447 at 433.936 kb on - strand, within Ga0059261_0447 at 433.937 kb on + strand, within Ga0059261_0447 at 433.937 kb on + strand, within Ga0059261_0447 at 433.937 kb on + strand, within Ga0059261_0447 at 433.937 kb on + strand, within Ga0059261_0447 at 433.938 kb on - strand, within Ga0059261_0447 at 433.938 kb on - strand, within Ga0059261_0447 at 433.989 kb on - strand, within Ga0059261_0447 at 433.989 kb on - strand, within Ga0059261_0447 at 434.048 kb on + strand, within Ga0059261_0447 at 434.049 kb on - strand, within Ga0059261_0447 at 434.049 kb on - strand, within Ga0059261_0447 at 434.153 kb on + strand, within Ga0059261_0447 at 434.153 kb on + strand, within Ga0059261_0447 at 434.154 kb on - strand, within Ga0059261_0447 at 434.297 kb on + strand at 434.298 kb on - strand at 434.298 kb on - strand at 434.298 kb on - strand at 434.597 kb on - strand, within Ga0059261_0448 at 434.647 kb on - strand, within Ga0059261_0448 at 434.724 kb on + strand at 434.724 kb on + strand at 434.724 kb on + strand at 434.725 kb on - strand at 434.725 kb on - strand at 434.752 kb on - strand at 434.825 kb on + strand at 434.825 kb on + strand at 434.826 kb on - strand at 434.826 kb on - strand at 434.826 kb on - strand at 435.143 kb on + strand, within Ga0059261_0449 at 435.143 kb on + strand, within Ga0059261_0449 at 435.143 kb on + strand, within Ga0059261_0449 at 435.143 kb on + strand, within Ga0059261_0449 at 435.143 kb on + strand, within Ga0059261_0449 at 435.144 kb on - strand, within Ga0059261_0449 at 435.144 kb on - strand, within Ga0059261_0449 at 435.144 kb on - strand, within Ga0059261_0449 at 435.144 kb on - strand, within Ga0059261_0449 at 435.144 kb on - strand, within Ga0059261_0449 at 435.144 kb on - strand, within Ga0059261_0449 at 435.215 kb on + strand at 435.260 kb on + strand at 435.260 kb on + strand at 435.261 kb on - strand at 435.261 kb on - strand at 435.543 kb on + strand, within Ga0059261_0450 at 435.543 kb on + strand, within Ga0059261_0450 at 435.544 kb on - strand, within Ga0059261_0450 at 435.569 kb on + strand, within Ga0059261_0450 at 435.569 kb on + strand, within Ga0059261_0450 at 435.570 kb on - strand, within Ga0059261_0450 at 435.570 kb on - strand, within Ga0059261_0450 at 435.649 kb on + strand, within Ga0059261_0450 at 435.650 kb on - strand, within Ga0059261_0450
Per-strain Table
Position Strand Gene LocusTag Fraction A22 0.01 mg/ml remove 433,439 + Ga0059261_0446 0.90 +0.1 433,439 + +0.1 433,439 + +1.1 433,440 - Ga0059261_0446 0.90 -0.0 433,440 - Ga0059261_0446 0.90 -2.3 433,440 - Ga0059261_0446 0.90 -0.4 433,517 + +0.5 433,517 + -0.0 433,517 + +1.1 433,517 + +0.4 433,517 + +0.2 433,517 + -0.4 433,517 + +0.6 433,517 + -0.1 433,518 - +0.1 433,518 - -0.3 433,518 - -0.5 433,518 - -0.3 433,553 + +0.1 433,553 + -0.4 433,553 + -0.1 433,554 - +0.1 433,613 + -0.3 433,614 - -0.4 433,614 - -0.3 433,614 - -0.7 433,614 - -0.3 433,614 - -0.4 433,631 + +0.5 433,631 + -0.3 433,632 - -0.0 433,649 + -0.1 433,649 + +0.6 433,935 + Ga0059261_0447 0.28 -0.1 433,936 - Ga0059261_0447 0.28 +0.2 433,937 + Ga0059261_0447 0.28 +0.4 433,937 + Ga0059261_0447 0.28 +0.5 433,937 + Ga0059261_0447 0.28 +0.4 433,937 + Ga0059261_0447 0.28 +0.3 433,938 - Ga0059261_0447 0.28 +1.3 433,938 - Ga0059261_0447 0.28 -1.0 433,989 - Ga0059261_0447 0.39 -0.1 433,989 - Ga0059261_0447 0.39 -0.4 434,048 + Ga0059261_0447 0.52 +0.1 434,049 - Ga0059261_0447 0.52 +2.4 434,049 - Ga0059261_0447 0.52 +0.0 434,153 + Ga0059261_0447 0.74 +2.4 434,153 + Ga0059261_0447 0.74 +1.1 434,154 - Ga0059261_0447 0.74 +1.1 434,297 + -0.0 434,298 - -0.5 434,298 - +0.2 434,298 - +0.1 434,597 - Ga0059261_0448 0.63 +0.6 434,647 - Ga0059261_0448 0.81 -0.0 434,724 + +0.4 434,724 + -0.5 434,724 + +0.2 434,725 - -0.1 434,725 - +0.9 434,752 - +0.3 434,825 + +0.1 434,825 + -1.1 434,826 - +1.1 434,826 - -0.3 434,826 - +0.3 435,143 + Ga0059261_0449 0.81 -0.4 435,143 + Ga0059261_0449 0.81 +0.3 435,143 + Ga0059261_0449 0.81 -0.7 435,143 + Ga0059261_0449 0.81 -0.4 435,143 + Ga0059261_0449 0.81 -0.7 435,144 - Ga0059261_0449 0.81 -0.3 435,144 - Ga0059261_0449 0.81 +0.7 435,144 - Ga0059261_0449 0.81 -0.5 435,144 - Ga0059261_0449 0.81 -0.5 435,144 - Ga0059261_0449 0.81 +0.4 435,144 - Ga0059261_0449 0.81 -0.6 435,215 + -0.1 435,260 + -0.9 435,260 + -1.4 435,261 - -0.2 435,261 - -0.7 435,543 + Ga0059261_0450 0.35 -0.5 435,543 + Ga0059261_0450 0.35 -0.3 435,544 - Ga0059261_0450 0.35 -0.3 435,569 + Ga0059261_0450 0.38 -0.2 435,569 + Ga0059261_0450 0.38 -0.0 435,570 - Ga0059261_0450 0.38 +0.3 435,570 - Ga0059261_0450 0.38 +0.4 435,649 + Ga0059261_0450 0.46 +0.3 435,650 - Ga0059261_0450 0.46 -0.7
Or see this region's nucleotide sequence