Experiment: A22 0.01 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Ga0059261_0411 and Ga0059261_0412 are separated by 346 nucleotides Ga0059261_0412 and Ga0059261_0413 are separated by 78 nucleotides Ga0059261_0413 and Ga0059261_0414 overlap by 11 nucleotides
Ga0059261_0411: Ga0059261_0411 - Uncharacterized conserved protein, at 394,981 to 395,514
_0411
Ga0059261_0412: Ga0059261_0412 - DNA-binding HTH domain-containing proteins, at 395,861 to 396,163
_0412
Ga0059261_0413: Ga0059261_0413 - N-acyl-L-homoserine lactone synthetase, at 396,242 to 396,859
_0413
Ga0059261_0414: Ga0059261_0414 - Phytanoyl-CoA dioxygenase (PhyH), at 396,849 to 397,736
_0414
Position (kb) 395
396
397 Strain fitness (log2 ratio) -2
-1
0
1 at 395.021 kb on + strand at 395.320 kb on - strand, within Ga0059261_0411 at 395.320 kb on - strand, within Ga0059261_0411 at 395.393 kb on + strand, within Ga0059261_0411 at 395.595 kb on + strand at 395.595 kb on + strand at 395.596 kb on - strand at 395.596 kb on - strand at 395.647 kb on + strand at 395.648 kb on - strand at 395.648 kb on - strand at 395.661 kb on + strand at 395.662 kb on - strand at 395.662 kb on - strand at 395.662 kb on - strand at 395.662 kb on - strand at 395.671 kb on + strand at 395.671 kb on + strand at 395.672 kb on - strand at 395.673 kb on + strand at 395.674 kb on - strand at 395.674 kb on - strand at 395.674 kb on - strand at 395.674 kb on - strand at 395.674 kb on - strand at 395.830 kb on + strand at 395.830 kb on + strand at 395.830 kb on + strand at 395.830 kb on + strand at 395.830 kb on + strand at 395.830 kb on + strand at 395.830 kb on + strand at 395.830 kb on + strand at 395.830 kb on + strand at 395.830 kb on + strand at 395.831 kb on - strand at 395.831 kb on - strand at 395.831 kb on - strand at 395.831 kb on - strand at 395.831 kb on - strand at 395.831 kb on - strand at 395.831 kb on - strand at 395.831 kb on - strand at 395.831 kb on - strand at 395.831 kb on - strand at 396.081 kb on - strand, within Ga0059261_0412 at 396.081 kb on - strand, within Ga0059261_0412 at 396.132 kb on + strand, within Ga0059261_0412 at 396.132 kb on + strand, within Ga0059261_0412 at 396.132 kb on + strand, within Ga0059261_0412 at 396.164 kb on + strand at 396.164 kb on + strand at 396.164 kb on + strand at 396.164 kb on + strand at 396.164 kb on + strand at 396.164 kb on + strand at 396.165 kb on - strand at 396.165 kb on - strand at 396.165 kb on - strand at 396.165 kb on - strand at 396.219 kb on + strand at 396.219 kb on + strand at 396.220 kb on - strand at 396.220 kb on - strand at 396.220 kb on - strand at 396.368 kb on + strand, within Ga0059261_0413 at 396.404 kb on + strand, within Ga0059261_0413 at 396.404 kb on + strand, within Ga0059261_0413 at 396.404 kb on + strand, within Ga0059261_0413 at 396.404 kb on + strand, within Ga0059261_0413 at 396.404 kb on + strand, within Ga0059261_0413 at 396.405 kb on - strand, within Ga0059261_0413 at 396.405 kb on - strand, within Ga0059261_0413 at 396.405 kb on - strand, within Ga0059261_0413 at 396.405 kb on - strand, within Ga0059261_0413 at 396.405 kb on - strand, within Ga0059261_0413 at 396.491 kb on + strand, within Ga0059261_0413 at 396.491 kb on + strand, within Ga0059261_0413 at 396.492 kb on - strand, within Ga0059261_0413 at 396.536 kb on + strand, within Ga0059261_0413 at 396.537 kb on - strand, within Ga0059261_0413 at 396.537 kb on - strand, within Ga0059261_0413 at 396.537 kb on - strand, within Ga0059261_0413 at 396.537 kb on - strand, within Ga0059261_0413 at 396.537 kb on - strand, within Ga0059261_0413 at 396.537 kb on - strand, within Ga0059261_0413 at 396.537 kb on - strand, within Ga0059261_0413 at 396.537 kb on - strand, within Ga0059261_0413 at 396.569 kb on - strand, within Ga0059261_0413 at 396.653 kb on + strand, within Ga0059261_0413 at 396.654 kb on - strand, within Ga0059261_0413 at 396.784 kb on + strand, within Ga0059261_0413 at 396.784 kb on + strand, within Ga0059261_0413 at 396.785 kb on - strand, within Ga0059261_0413 at 396.785 kb on - strand, within Ga0059261_0413 at 396.921 kb on + strand at 396.921 kb on + strand at 396.921 kb on + strand at 396.921 kb on + strand at 396.921 kb on + strand at 396.921 kb on + strand at 396.921 kb on + strand at 396.921 kb on + strand at 396.921 kb on + strand at 396.922 kb on - strand at 396.922 kb on - strand at 396.943 kb on + strand, within Ga0059261_0414 at 396.943 kb on + strand, within Ga0059261_0414 at 396.944 kb on - strand, within Ga0059261_0414 at 396.944 kb on - strand, within Ga0059261_0414 at 397.023 kb on + strand, within Ga0059261_0414 at 397.023 kb on + strand, within Ga0059261_0414 at 397.024 kb on - strand, within Ga0059261_0414 at 397.120 kb on - strand, within Ga0059261_0414 at 397.123 kb on + strand, within Ga0059261_0414 at 397.123 kb on + strand, within Ga0059261_0414 at 397.123 kb on + strand, within Ga0059261_0414 at 397.123 kb on + strand at 397.124 kb on - strand, within Ga0059261_0414 at 397.124 kb on - strand, within Ga0059261_0414 at 397.124 kb on - strand, within Ga0059261_0414 at 397.124 kb on - strand, within Ga0059261_0414
Per-strain Table
Position Strand Gene LocusTag Fraction A22 0.01 mg/ml remove 395,021 + +0.6 395,320 - Ga0059261_0411 0.63 +0.3 395,320 - Ga0059261_0411 0.63 -0.5 395,393 + Ga0059261_0411 0.77 -0.3 395,595 + +0.7 395,595 + -0.5 395,596 - -0.1 395,596 - +0.1 395,647 + +0.6 395,648 - +0.5 395,648 - -1.3 395,661 + -0.1 395,662 - +1.1 395,662 - -0.7 395,662 - +1.0 395,662 - +0.1 395,671 + +0.4 395,671 + -0.1 395,672 - +0.1 395,673 + +0.3 395,674 - +0.5 395,674 - +0.6 395,674 - -0.5 395,674 - +1.1 395,674 - +0.2 395,830 + -0.4 395,830 + -0.0 395,830 + +0.4 395,830 + +0.6 395,830 + +0.2 395,830 + +0.0 395,830 + +0.6 395,830 + -0.1 395,830 + -0.5 395,830 + +0.1 395,831 - -0.8 395,831 - +1.5 395,831 - +0.9 395,831 - +0.8 395,831 - +0.2 395,831 - -0.4 395,831 - +0.1 395,831 - +0.0 395,831 - +0.1 395,831 - -2.0 396,081 - Ga0059261_0412 0.73 -0.1 396,081 - Ga0059261_0412 0.73 -1.2 396,132 + Ga0059261_0412 0.89 +0.9 396,132 + Ga0059261_0412 0.89 +1.1 396,132 + Ga0059261_0412 0.89 +0.3 396,164 + +1.4 396,164 + +0.3 396,164 + -0.6 396,164 + -0.7 396,164 + -0.1 396,164 + +0.3 396,165 - -0.4 396,165 - -0.1 396,165 - -0.5 396,165 - -0.3 396,219 + -0.4 396,219 + +1.3 396,220 - +0.7 396,220 - -0.1 396,220 - -0.5 396,368 + Ga0059261_0413 0.20 +0.2 396,404 + Ga0059261_0413 0.26 -0.3 396,404 + Ga0059261_0413 0.26 +0.3 396,404 + Ga0059261_0413 0.26 -2.0 396,404 + Ga0059261_0413 0.26 -0.0 396,404 + Ga0059261_0413 0.26 -0.2 396,405 - Ga0059261_0413 0.26 +1.0 396,405 - Ga0059261_0413 0.26 -0.1 396,405 - Ga0059261_0413 0.26 -1.0 396,405 - Ga0059261_0413 0.26 -0.7 396,405 - Ga0059261_0413 0.26 -0.7 396,491 + Ga0059261_0413 0.40 -1.1 396,491 + Ga0059261_0413 0.40 -1.1 396,492 - Ga0059261_0413 0.40 -1.0 396,536 + Ga0059261_0413 0.48 +0.9 396,537 - Ga0059261_0413 0.48 -0.5 396,537 - Ga0059261_0413 0.48 +0.1 396,537 - Ga0059261_0413 0.48 -0.1 396,537 - Ga0059261_0413 0.48 -0.3 396,537 - Ga0059261_0413 0.48 -0.1 396,537 - Ga0059261_0413 0.48 -0.8 396,537 - Ga0059261_0413 0.48 +0.5 396,537 - Ga0059261_0413 0.48 -0.9 396,569 - Ga0059261_0413 0.53 +0.3 396,653 + Ga0059261_0413 0.67 +0.6 396,654 - Ga0059261_0413 0.67 -1.6 396,784 + Ga0059261_0413 0.88 -1.3 396,784 + Ga0059261_0413 0.88 +0.1 396,785 - Ga0059261_0413 0.88 +0.2 396,785 - Ga0059261_0413 0.88 -0.1 396,921 + +0.9 396,921 + +0.0 396,921 + -0.2 396,921 + +0.0 396,921 + +0.3 396,921 + +1.2 396,921 + +0.1 396,921 + +0.7 396,921 + -0.1 396,922 - +0.2 396,922 - +1.1 396,943 + Ga0059261_0414 0.11 -1.5 396,943 + Ga0059261_0414 0.11 -0.6 396,944 - Ga0059261_0414 0.11 +0.0 396,944 - Ga0059261_0414 0.11 -0.9 397,023 + Ga0059261_0414 0.20 -0.4 397,023 + Ga0059261_0414 0.20 +0.8 397,024 - Ga0059261_0414 0.20 +1.3 397,120 - Ga0059261_0414 0.31 +0.0 397,123 + Ga0059261_0414 0.31 -0.0 397,123 + Ga0059261_0414 0.31 +0.4 397,123 + Ga0059261_0414 0.31 -0.9 397,123 + -0.5 397,124 - Ga0059261_0414 0.31 -1.4 397,124 - Ga0059261_0414 0.31 -0.2 397,124 - Ga0059261_0414 0.31 -0.1 397,124 - Ga0059261_0414 0.31 -0.3
Or see this region's nucleotide sequence