Experiment: Choline chloride 500 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt AO356_26040 and AO356_26045 overlap by 1 nucleotides AO356_26045 and AO356_26050 are separated by 271 nucleotides AO356_26050 and AO356_26055 are separated by 238 nucleotides AO356_26055 and AO356_26060 are separated by 9 nucleotides
AO356_26040: AO356_26040 - hypothetical protein, at 5,892,308 to 5,892,742
_26040
AO356_26045: AO356_26045 - metal-binding protein, at 5,892,742 to 5,893,188
_26045
AO356_26050: AO356_26050 - chemotaxis protein, at 5,893,460 to 5,895,454
_26050
AO356_26055: AO356_26055 - hypothetical protein, at 5,895,693 to 5,895,881
_26055
AO356_26060: AO356_26060 - fe2+ zn2+ uptake regulation protein, at 5,895,891 to 5,896,271
_26060
Position (kb) 5893
5894
5895
5896 Strain fitness (log2 ratio) -2
-1
0
1 at 5892.487 kb on - strand, within AO356_26040 at 5892.729 kb on + strand at 5892.729 kb on + strand at 5892.729 kb on + strand at 5892.730 kb on - strand at 5892.806 kb on + strand, within AO356_26045 at 5893.233 kb on + strand at 5893.298 kb on + strand at 5893.299 kb on - strand at 5894.305 kb on + strand, within AO356_26050 at 5894.305 kb on + strand, within AO356_26050 at 5894.305 kb on + strand, within AO356_26050 at 5894.306 kb on - strand, within AO356_26050 at 5894.306 kb on - strand, within AO356_26050 at 5894.306 kb on - strand, within AO356_26050 at 5894.469 kb on + strand, within AO356_26050 at 5894.470 kb on - strand, within AO356_26050 at 5894.471 kb on + strand, within AO356_26050 at 5894.471 kb on + strand, within AO356_26050 at 5894.471 kb on + strand, within AO356_26050 at 5894.472 kb on - strand, within AO356_26050 at 5894.472 kb on - strand, within AO356_26050 at 5894.472 kb on - strand, within AO356_26050 at 5894.531 kb on + strand, within AO356_26050 at 5894.531 kb on + strand, within AO356_26050 at 5894.531 kb on + strand, within AO356_26050 at 5894.531 kb on + strand, within AO356_26050 at 5894.531 kb on + strand, within AO356_26050 at 5894.532 kb on - strand, within AO356_26050 at 5894.532 kb on - strand, within AO356_26050 at 5894.532 kb on - strand, within AO356_26050 at 5894.532 kb on - strand, within AO356_26050 at 5894.532 kb on - strand, within AO356_26050 at 5894.532 kb on - strand, within AO356_26050 at 5894.532 kb on - strand, within AO356_26050 at 5894.621 kb on - strand, within AO356_26050 at 5894.953 kb on + strand, within AO356_26050 at 5894.954 kb on - strand, within AO356_26050 at 5894.956 kb on - strand, within AO356_26050 at 5895.021 kb on + strand, within AO356_26050 at 5895.055 kb on + strand, within AO356_26050 at 5895.055 kb on + strand, within AO356_26050 at 5895.106 kb on + strand, within AO356_26050 at 5895.106 kb on + strand, within AO356_26050 at 5895.175 kb on - strand, within AO356_26050 at 5895.197 kb on + strand, within AO356_26050 at 5895.198 kb on - strand, within AO356_26050 at 5895.314 kb on - strand at 5895.423 kb on + strand at 5895.424 kb on - strand at 5895.510 kb on + strand at 5895.511 kb on - strand at 5895.512 kb on + strand at 5895.513 kb on - strand at 5895.513 kb on - strand at 5895.513 kb on - strand at 5895.515 kb on - strand at 5895.515 kb on - strand at 5895.515 kb on - strand at 5895.538 kb on + strand at 5895.539 kb on - strand at 5895.539 kb on - strand at 5895.597 kb on + strand at 5895.598 kb on - strand at 5895.598 kb on - strand at 5895.641 kb on + strand at 5895.642 kb on - strand at 5895.674 kb on + strand at 5895.675 kb on - strand at 5895.999 kb on + strand, within AO356_26060 at 5896.312 kb on + strand at 5896.312 kb on + strand at 5896.324 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Choline chloride 500 mM remove 5,892,487 - AO356_26040 0.41 -0.8 5,892,729 + -0.1 5,892,729 + -0.3 5,892,729 + +0.1 5,892,730 - +0.0 5,892,806 + AO356_26045 0.14 +0.2 5,893,233 + -1.0 5,893,298 + +0.3 5,893,299 - -0.6 5,894,305 + AO356_26050 0.42 +1.1 5,894,305 + AO356_26050 0.42 -0.0 5,894,305 + AO356_26050 0.42 -0.3 5,894,306 - AO356_26050 0.42 +0.8 5,894,306 - AO356_26050 0.42 +0.5 5,894,306 - AO356_26050 0.42 +1.1 5,894,469 + AO356_26050 0.51 +0.0 5,894,470 - AO356_26050 0.51 -0.3 5,894,471 + AO356_26050 0.51 +0.9 5,894,471 + AO356_26050 0.51 +0.2 5,894,471 + AO356_26050 0.51 -0.4 5,894,472 - AO356_26050 0.51 +0.3 5,894,472 - AO356_26050 0.51 -0.4 5,894,472 - AO356_26050 0.51 -0.5 5,894,531 + AO356_26050 0.54 +0.6 5,894,531 + AO356_26050 0.54 -0.0 5,894,531 + AO356_26050 0.54 +0.2 5,894,531 + AO356_26050 0.54 +0.8 5,894,531 + AO356_26050 0.54 +1.0 5,894,532 - AO356_26050 0.54 +1.2 5,894,532 - AO356_26050 0.54 -1.7 5,894,532 - AO356_26050 0.54 -1.8 5,894,532 - AO356_26050 0.54 -0.8 5,894,532 - AO356_26050 0.54 -0.5 5,894,532 - AO356_26050 0.54 -0.8 5,894,532 - AO356_26050 0.54 -0.0 5,894,621 - AO356_26050 0.58 +0.3 5,894,953 + AO356_26050 0.75 -1.4 5,894,954 - AO356_26050 0.75 +1.0 5,894,956 - AO356_26050 0.75 +0.7 5,895,021 + AO356_26050 0.78 +1.1 5,895,055 + AO356_26050 0.80 -1.3 5,895,055 + AO356_26050 0.80 +0.3 5,895,106 + AO356_26050 0.83 +0.7 5,895,106 + AO356_26050 0.83 -0.5 5,895,175 - AO356_26050 0.86 +0.9 5,895,197 + AO356_26050 0.87 +1.2 5,895,198 - AO356_26050 0.87 +0.9 5,895,314 - -0.1 5,895,423 + +0.6 5,895,424 - -0.0 5,895,510 + -0.0 5,895,511 - +0.4 5,895,512 + -0.2 5,895,513 - +0.2 5,895,513 - +0.8 5,895,513 - -0.9 5,895,515 - -0.1 5,895,515 - -0.8 5,895,515 - +0.1 5,895,538 + -0.7 5,895,539 - -0.0 5,895,539 - -0.0 5,895,597 + -1.3 5,895,598 - +1.2 5,895,598 - +0.3 5,895,641 + +0.3 5,895,642 - +0.1 5,895,674 + +0.0 5,895,675 - -0.7 5,895,999 + AO356_26060 0.28 +1.2 5,896,312 + +1.0 5,896,312 + +0.9 5,896,324 - +1.4
Or see this region's nucleotide sequence