Experiment: Choline chloride 500 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt AO356_24275 and AO356_24280 are separated by 17 nucleotides AO356_24280 and AO356_24285 are separated by 7 nucleotides
AO356_24275: AO356_24275 - taurine catabolism dioxygenase TauD, at 5,474,215 to 5,475,261
_24275
AO356_24280: AO356_24280 - peptide synthase, at 5,475,279 to 5,478,707
_24280
AO356_24285: AO356_24285 - hypothetical protein, at 5,478,715 to 5,479,647
_24285
Position (kb) 5475
5476
5477
5478
5479 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 5474.423 kb on + strand, within AO356_24275 at 5474.423 kb on + strand, within AO356_24275 at 5474.831 kb on + strand, within AO356_24275 at 5474.865 kb on - strand, within AO356_24275 at 5474.921 kb on + strand, within AO356_24275 at 5474.921 kb on + strand, within AO356_24275 at 5474.921 kb on + strand, within AO356_24275 at 5474.921 kb on + strand, within AO356_24275 at 5474.921 kb on + strand, within AO356_24275 at 5474.922 kb on - strand, within AO356_24275 at 5474.925 kb on + strand, within AO356_24275 at 5474.925 kb on + strand, within AO356_24275 at 5474.925 kb on + strand, within AO356_24275 at 5474.966 kb on + strand, within AO356_24275 at 5474.966 kb on + strand, within AO356_24275 at 5474.967 kb on - strand, within AO356_24275 at 5475.255 kb on + strand at 5475.255 kb on + strand at 5475.256 kb on - strand at 5475.261 kb on + strand at 5475.637 kb on + strand, within AO356_24280 at 5475.638 kb on - strand, within AO356_24280 at 5475.929 kb on - strand, within AO356_24280 at 5476.215 kb on + strand, within AO356_24280 at 5476.215 kb on + strand, within AO356_24280 at 5476.216 kb on - strand, within AO356_24280 at 5477.429 kb on - strand, within AO356_24280 at 5477.429 kb on - strand, within AO356_24280 at 5477.429 kb on - strand, within AO356_24280 at 5477.494 kb on + strand, within AO356_24280 at 5477.494 kb on + strand, within AO356_24280 at 5477.495 kb on - strand, within AO356_24280 at 5478.023 kb on - strand, within AO356_24280 at 5478.041 kb on - strand, within AO356_24280 at 5478.128 kb on - strand, within AO356_24280 at 5478.174 kb on + strand, within AO356_24280 at 5478.175 kb on - strand, within AO356_24280 at 5478.175 kb on - strand, within AO356_24280 at 5478.214 kb on + strand, within AO356_24280 at 5478.214 kb on + strand, within AO356_24280 at 5478.215 kb on - strand, within AO356_24280 at 5478.463 kb on + strand at 5478.463 kb on + strand at 5478.490 kb on + strand at 5478.839 kb on + strand, within AO356_24285 at 5478.896 kb on + strand, within AO356_24285 at 5478.897 kb on - strand, within AO356_24285 at 5478.897 kb on - strand, within AO356_24285 at 5478.950 kb on - strand, within AO356_24285 at 5479.175 kb on + strand, within AO356_24285 at 5479.187 kb on + strand, within AO356_24285 at 5479.187 kb on + strand, within AO356_24285 at 5479.187 kb on + strand, within AO356_24285 at 5479.334 kb on + strand, within AO356_24285 at 5479.334 kb on + strand, within AO356_24285 at 5479.335 kb on - strand, within AO356_24285 at 5479.389 kb on + strand, within AO356_24285 at 5479.389 kb on + strand, within AO356_24285 at 5479.389 kb on + strand, within AO356_24285 at 5479.389 kb on + strand, within AO356_24285 at 5479.389 kb on + strand, within AO356_24285 at 5479.390 kb on - strand, within AO356_24285 at 5479.390 kb on - strand, within AO356_24285 at 5479.390 kb on - strand, within AO356_24285 at 5479.391 kb on + strand, within AO356_24285 at 5479.530 kb on + strand, within AO356_24285 at 5479.531 kb on - strand, within AO356_24285 at 5479.531 kb on - strand, within AO356_24285
Per-strain Table
Position Strand Gene LocusTag Fraction Choline chloride 500 mM remove 5,474,423 + AO356_24275 0.20 +1.1 5,474,423 + AO356_24275 0.20 -0.7 5,474,831 + AO356_24275 0.59 +0.6 5,474,865 - AO356_24275 0.62 +0.4 5,474,921 + AO356_24275 0.67 -0.9 5,474,921 + AO356_24275 0.67 -1.1 5,474,921 + AO356_24275 0.67 -0.4 5,474,921 + AO356_24275 0.67 +0.0 5,474,921 + AO356_24275 0.67 -0.2 5,474,922 - AO356_24275 0.68 -0.2 5,474,925 + AO356_24275 0.68 -0.5 5,474,925 + AO356_24275 0.68 -0.7 5,474,925 + AO356_24275 0.68 -0.0 5,474,966 + AO356_24275 0.72 -0.9 5,474,966 + AO356_24275 0.72 -1.2 5,474,967 - AO356_24275 0.72 -0.6 5,475,255 + +0.7 5,475,255 + -0.4 5,475,256 - -0.1 5,475,261 + +0.0 5,475,637 + AO356_24280 0.10 +0.1 5,475,638 - AO356_24280 0.10 -0.4 5,475,929 - AO356_24280 0.19 +0.2 5,476,215 + AO356_24280 0.27 -0.3 5,476,215 + AO356_24280 0.27 -0.4 5,476,216 - AO356_24280 0.27 +0.2 5,477,429 - AO356_24280 0.63 -1.4 5,477,429 - AO356_24280 0.63 -1.0 5,477,429 - AO356_24280 0.63 +0.8 5,477,494 + AO356_24280 0.65 +1.1 5,477,494 + AO356_24280 0.65 -2.9 5,477,495 - AO356_24280 0.65 +1.0 5,478,023 - AO356_24280 0.80 +0.3 5,478,041 - AO356_24280 0.81 -0.4 5,478,128 - AO356_24280 0.83 -0.0 5,478,174 + AO356_24280 0.84 +0.5 5,478,175 - AO356_24280 0.84 +0.7 5,478,175 - AO356_24280 0.84 -1.2 5,478,214 + AO356_24280 0.86 -0.6 5,478,214 + AO356_24280 0.86 +0.3 5,478,215 - AO356_24280 0.86 -1.6 5,478,463 + +0.9 5,478,463 + -0.3 5,478,490 + -0.7 5,478,839 + AO356_24285 0.13 +0.1 5,478,896 + AO356_24285 0.19 +0.0 5,478,897 - AO356_24285 0.20 -0.9 5,478,897 - AO356_24285 0.20 -0.1 5,478,950 - AO356_24285 0.25 -1.2 5,479,175 + AO356_24285 0.49 +0.6 5,479,187 + AO356_24285 0.51 +0.2 5,479,187 + AO356_24285 0.51 -1.1 5,479,187 + AO356_24285 0.51 +0.1 5,479,334 + AO356_24285 0.66 -0.5 5,479,334 + AO356_24285 0.66 +1.8 5,479,335 - AO356_24285 0.66 +0.0 5,479,389 + AO356_24285 0.72 -0.6 5,479,389 + AO356_24285 0.72 +0.9 5,479,389 + AO356_24285 0.72 -0.2 5,479,389 + AO356_24285 0.72 +0.0 5,479,389 + AO356_24285 0.72 +1.5 5,479,390 - AO356_24285 0.72 +0.8 5,479,390 - AO356_24285 0.72 -0.2 5,479,390 - AO356_24285 0.72 -0.7 5,479,391 + AO356_24285 0.72 +0.5 5,479,530 + AO356_24285 0.87 +1.1 5,479,531 - AO356_24285 0.87 +1.0 5,479,531 - AO356_24285 0.87 -0.3
Or see this region's nucleotide sequence