Strain Fitness in Pseudomonas fluorescens FW300-N2C3 around AO356_19660

Experiment: Choline chloride 500 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAO356_19655 and AO356_19660 are separated by 328 nucleotidesAO356_19660 and AO356_19665 overlap by 4 nucleotides AO356_19655: AO356_19655 - glycine/betaine ABC transporter substrate-binding protein, at 4,406,906 to 4,407,760 _19655 AO356_19660: AO356_19660 - hypothetical protein, at 4,408,089 to 4,408,400 _19660 AO356_19665: AO356_19665 - cation/acetate symporter ActP, at 4,408,397 to 4,410,055 _19665 Position (kb) 4408 4409Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 4407.183 kb on - strand, within AO356_19655at 4407.264 kb on - strand, within AO356_19655at 4407.264 kb on - strand, within AO356_19655at 4407.264 kb on - strand, within AO356_19655at 4407.380 kb on + strand, within AO356_19655at 4407.381 kb on - strand, within AO356_19655at 4407.381 kb on - strand, within AO356_19655at 4407.564 kb on + strand, within AO356_19655at 4407.564 kb on + strand, within AO356_19655at 4407.565 kb on - strand, within AO356_19655at 4407.758 kb on + strandat 4407.758 kb on + strandat 4407.758 kb on + strandat 4407.758 kb on + strandat 4407.758 kb on + strandat 4407.759 kb on - strandat 4407.759 kb on - strandat 4407.759 kb on - strandat 4407.759 kb on - strandat 4407.759 kb on - strandat 4407.759 kb on - strandat 4407.763 kb on - strandat 4407.763 kb on - strandat 4407.837 kb on + strandat 4407.837 kb on + strandat 4407.883 kb on + strandat 4407.884 kb on - strandat 4407.884 kb on - strandat 4407.884 kb on - strandat 4408.004 kb on + strandat 4408.004 kb on + strandat 4408.004 kb on + strandat 4408.004 kb on + strandat 4408.004 kb on + strandat 4408.004 kb on + strandat 4408.004 kb on + strandat 4408.007 kb on + strandat 4408.007 kb on + strandat 4408.008 kb on - strandat 4408.008 kb on - strandat 4408.008 kb on - strandat 4408.008 kb on - strandat 4408.010 kb on + strandat 4408.010 kb on + strandat 4408.010 kb on + strandat 4408.010 kb on + strandat 4408.011 kb on - strandat 4408.011 kb on - strandat 4408.011 kb on - strandat 4408.011 kb on - strandat 4408.042 kb on + strandat 4408.042 kb on + strandat 4408.043 kb on - strandat 4408.043 kb on - strandat 4408.047 kb on + strandat 4408.047 kb on + strandat 4408.047 kb on + strandat 4408.047 kb on + strandat 4408.048 kb on - strandat 4408.048 kb on - strandat 4408.048 kb on - strandat 4408.048 kb on - strandat 4408.062 kb on + strandat 4408.062 kb on + strandat 4408.063 kb on - strandat 4408.063 kb on - strandat 4408.104 kb on + strandat 4408.104 kb on + strandat 4408.105 kb on - strandat 4408.105 kb on - strandat 4408.105 kb on - strandat 4408.105 kb on - strandat 4408.105 kb on - strandat 4408.280 kb on + strand, within AO356_19660at 4408.332 kb on + strand, within AO356_19660at 4408.332 kb on + strand, within AO356_19660at 4408.332 kb on + strand, within AO356_19660at 4408.332 kb on + strand, within AO356_19660at 4408.333 kb on - strand, within AO356_19660at 4408.333 kb on - strand, within AO356_19660at 4408.333 kb on - strand, within AO356_19660at 4408.333 kb on - strand, within AO356_19660at 4408.333 kb on - strand, within AO356_19660at 4408.333 kb on - strand, within AO356_19660at 4408.544 kb on + strandat 4408.544 kb on + strandat 4408.544 kb on + strandat 4408.545 kb on - strandat 4408.545 kb on - strandat 4408.553 kb on + strandat 4408.554 kb on - strandat 4408.589 kb on + strand, within AO356_19665at 4408.589 kb on + strand, within AO356_19665at 4408.589 kb on + strand, within AO356_19665at 4408.589 kb on + strand, within AO356_19665at 4408.589 kb on + strand, within AO356_19665at 4408.589 kb on + strand, within AO356_19665at 4408.590 kb on - strand, within AO356_19665at 4408.592 kb on + strand, within AO356_19665at 4408.592 kb on + strand, within AO356_19665at 4408.592 kb on + strand, within AO356_19665at 4408.592 kb on + strand, within AO356_19665at 4408.593 kb on - strand, within AO356_19665at 4408.593 kb on - strand, within AO356_19665at 4408.649 kb on + strand, within AO356_19665at 4408.649 kb on + strand, within AO356_19665at 4408.649 kb on + strand, within AO356_19665at 4408.650 kb on - strand, within AO356_19665at 4408.650 kb on - strand, within AO356_19665at 4408.650 kb on - strand, within AO356_19665at 4408.650 kb on - strand, within AO356_19665at 4408.650 kb on - strand, within AO356_19665at 4408.704 kb on - strand, within AO356_19665at 4408.718 kb on + strand, within AO356_19665at 4408.718 kb on + strand, within AO356_19665at 4408.718 kb on + strand, within AO356_19665at 4408.719 kb on - strand, within AO356_19665at 4408.789 kb on + strand, within AO356_19665at 4408.790 kb on - strand, within AO356_19665at 4408.793 kb on + strand, within AO356_19665at 4408.793 kb on + strand, within AO356_19665at 4408.793 kb on + strand, within AO356_19665at 4408.793 kb on + strand, within AO356_19665at 4408.794 kb on - strand, within AO356_19665at 4408.794 kb on - strand, within AO356_19665at 4408.818 kb on - strand, within AO356_19665at 4408.843 kb on + strand, within AO356_19665at 4408.843 kb on + strand, within AO356_19665at 4408.843 kb on + strand, within AO356_19665at 4408.843 kb on + strand, within AO356_19665at 4408.843 kb on + strand, within AO356_19665at 4408.844 kb on - strand, within AO356_19665at 4408.883 kb on + strand, within AO356_19665at 4408.883 kb on + strand, within AO356_19665at 4408.884 kb on - strand, within AO356_19665at 4408.943 kb on + strand, within AO356_19665at 4408.944 kb on - strand, within AO356_19665at 4408.985 kb on + strand, within AO356_19665at 4408.985 kb on + strand, within AO356_19665at 4408.985 kb on + strand, within AO356_19665at 4408.985 kb on + strand, within AO356_19665at 4408.985 kb on + strand, within AO356_19665at 4408.985 kb on + strand, within AO356_19665at 4408.985 kb on + strand, within AO356_19665at 4408.986 kb on - strand, within AO356_19665at 4408.986 kb on - strand, within AO356_19665at 4408.986 kb on - strand, within AO356_19665at 4408.986 kb on - strand, within AO356_19665at 4408.986 kb on - strand, within AO356_19665at 4409.140 kb on + strand, within AO356_19665at 4409.296 kb on - strand, within AO356_19665at 4409.300 kb on + strand, within AO356_19665at 4409.300 kb on + strand, within AO356_19665at 4409.300 kb on + strand, within AO356_19665at 4409.300 kb on + strand, within AO356_19665at 4409.301 kb on - strand, within AO356_19665at 4409.301 kb on - strand, within AO356_19665at 4409.301 kb on - strand, within AO356_19665at 4409.301 kb on - strand, within AO356_19665at 4409.321 kb on + strand, within AO356_19665at 4409.321 kb on + strand, within AO356_19665at 4409.321 kb on + strand, within AO356_19665at 4409.322 kb on - strand, within AO356_19665at 4409.322 kb on - strand, within AO356_19665at 4409.322 kb on - strand, within AO356_19665at 4409.322 kb on - strand, within AO356_19665at 4409.327 kb on + strand, within AO356_19665at 4409.327 kb on + strand, within AO356_19665at 4409.327 kb on + strand, within AO356_19665at 4409.327 kb on + strand, within AO356_19665at 4409.327 kb on + strand, within AO356_19665at 4409.327 kb on + strand, within AO356_19665at 4409.327 kb on + strand, within AO356_19665at 4409.327 kb on + strand, within AO356_19665at 4409.327 kb on + strand, within AO356_19665at 4409.327 kb on + strand, within AO356_19665at 4409.327 kb on + strand, within AO356_19665at 4409.327 kb on + strand, within AO356_19665at 4409.328 kb on - strand, within AO356_19665at 4409.328 kb on - strand, within AO356_19665at 4409.328 kb on - strand, within AO356_19665at 4409.328 kb on - strand, within AO356_19665at 4409.328 kb on - strand, within AO356_19665at 4409.328 kb on - strand, within AO356_19665at 4409.328 kb on - strand, within AO356_19665at 4409.328 kb on - strand, within AO356_19665at 4409.328 kb on - strand, within AO356_19665at 4409.328 kb on - strand, within AO356_19665at 4409.328 kb on - strand, within AO356_19665at 4409.328 kb on - strand, within AO356_19665at 4409.330 kb on - strand, within AO356_19665at 4409.330 kb on - strand, within AO356_19665

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Per-strain Table

Position Strand Gene LocusTag Fraction Choline chloride 500 mM
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4,407,183 - AO356_19655 0.32 +0.3
4,407,264 - AO356_19655 0.42 -1.9
4,407,264 - AO356_19655 0.42 +0.3
4,407,264 - AO356_19655 0.42 +0.6
4,407,380 + AO356_19655 0.55 +1.4
4,407,381 - AO356_19655 0.56 +0.0
4,407,381 - AO356_19655 0.56 +0.6
4,407,564 + AO356_19655 0.77 +0.1
4,407,564 + AO356_19655 0.77 -0.1
4,407,565 - AO356_19655 0.77 +0.6
4,407,758 + -0.2
4,407,758 + +0.7
4,407,758 + -0.6
4,407,758 + -1.1
4,407,758 + +0.6
4,407,759 - +1.0
4,407,759 - -0.1
4,407,759 - +1.3
4,407,759 - -0.1
4,407,759 - +1.1
4,407,759 - -0.0
4,407,763 - -0.2
4,407,763 - +0.0
4,407,837 + +1.1
4,407,837 + -3.2
4,407,883 + -0.4
4,407,884 - +1.1
4,407,884 - -1.1
4,407,884 - +0.6
4,408,004 + +0.9
4,408,004 + +0.9
4,408,004 + +0.2
4,408,004 + +0.4
4,408,004 + +0.8
4,408,004 + -0.4
4,408,004 + +0.2
4,408,007 + +0.4
4,408,007 + +0.3
4,408,008 - +1.4
4,408,008 - +0.1
4,408,008 - +0.3
4,408,008 - -1.0
4,408,010 + -0.0
4,408,010 + -0.7
4,408,010 + -0.4
4,408,010 + -0.2
4,408,011 - -0.1
4,408,011 - +0.5
4,408,011 - +1.4
4,408,011 - +1.5
4,408,042 + +1.1
4,408,042 + +0.2
4,408,043 - -1.2
4,408,043 - +0.4
4,408,047 + +0.3
4,408,047 + +0.3
4,408,047 + -0.4
4,408,047 + +0.4
4,408,048 - -0.4
4,408,048 - +0.7
4,408,048 - -0.6
4,408,048 - -0.3
4,408,062 + +0.5
4,408,062 + -0.7
4,408,063 - +1.3
4,408,063 - -2.5
4,408,104 + -0.0
4,408,104 + -1.2
4,408,105 - +1.1
4,408,105 - +0.5
4,408,105 - -0.4
4,408,105 - -0.4
4,408,105 - +0.1
4,408,280 + AO356_19660 0.61 +1.6
4,408,332 + AO356_19660 0.78 -0.2
4,408,332 + AO356_19660 0.78 +0.1
4,408,332 + AO356_19660 0.78 +0.8
4,408,332 + AO356_19660 0.78 +0.3
4,408,333 - AO356_19660 0.78 +1.0
4,408,333 - AO356_19660 0.78 -0.2
4,408,333 - AO356_19660 0.78 -0.9
4,408,333 - AO356_19660 0.78 -0.0
4,408,333 - AO356_19660 0.78 -0.3
4,408,333 - AO356_19660 0.78 +1.9
4,408,544 + +1.1
4,408,544 + -0.9
4,408,544 + +0.1
4,408,545 - +1.1
4,408,545 - +0.6
4,408,553 + +0.6
4,408,554 - -0.8
4,408,589 + AO356_19665 0.12 +1.0
4,408,589 + AO356_19665 0.12 +0.2
4,408,589 + AO356_19665 0.12 -0.1
4,408,589 + AO356_19665 0.12 -3.2
4,408,589 + AO356_19665 0.12 +0.1
4,408,589 + AO356_19665 0.12 -0.4
4,408,590 - AO356_19665 0.12 -0.5
4,408,592 + AO356_19665 0.12 +0.5
4,408,592 + AO356_19665 0.12 +0.3
4,408,592 + AO356_19665 0.12 +0.8
4,408,592 + AO356_19665 0.12 +0.8
4,408,593 - AO356_19665 0.12 +0.5
4,408,593 - AO356_19665 0.12 -0.1
4,408,649 + AO356_19665 0.15 +0.6
4,408,649 + AO356_19665 0.15 +0.4
4,408,649 + AO356_19665 0.15 -0.3
4,408,650 - AO356_19665 0.15 -0.1
4,408,650 - AO356_19665 0.15 +0.3
4,408,650 - AO356_19665 0.15 +0.8
4,408,650 - AO356_19665 0.15 +1.3
4,408,650 - AO356_19665 0.15 -0.6
4,408,704 - AO356_19665 0.19 -0.4
4,408,718 + AO356_19665 0.19 +0.0
4,408,718 + AO356_19665 0.19 -0.9
4,408,718 + AO356_19665 0.19 -1.2
4,408,719 - AO356_19665 0.19 -0.2
4,408,789 + AO356_19665 0.24 +0.3
4,408,790 - AO356_19665 0.24 +0.1
4,408,793 + AO356_19665 0.24 +0.1
4,408,793 + AO356_19665 0.24 -1.5
4,408,793 + AO356_19665 0.24 -0.9
4,408,793 + AO356_19665 0.24 -1.3
4,408,794 - AO356_19665 0.24 +0.5
4,408,794 - AO356_19665 0.24 +1.3
4,408,818 - AO356_19665 0.25 -0.6
4,408,843 + AO356_19665 0.27 +0.4
4,408,843 + AO356_19665 0.27 +1.0
4,408,843 + AO356_19665 0.27 -0.2
4,408,843 + AO356_19665 0.27 -0.9
4,408,843 + AO356_19665 0.27 +0.4
4,408,844 - AO356_19665 0.27 +0.1
4,408,883 + AO356_19665 0.29 +0.3
4,408,883 + AO356_19665 0.29 +1.2
4,408,884 - AO356_19665 0.29 +0.2
4,408,943 + AO356_19665 0.33 +0.8
4,408,944 - AO356_19665 0.33 -0.8
4,408,985 + AO356_19665 0.35 -0.3
4,408,985 + AO356_19665 0.35 -0.5
4,408,985 + AO356_19665 0.35 -0.2
4,408,985 + AO356_19665 0.35 +0.8
4,408,985 + AO356_19665 0.35 -1.1
4,408,985 + AO356_19665 0.35 +0.2
4,408,985 + AO356_19665 0.35 +0.1
4,408,986 - AO356_19665 0.36 +1.1
4,408,986 - AO356_19665 0.36 +0.1
4,408,986 - AO356_19665 0.36 -0.9
4,408,986 - AO356_19665 0.36 -0.1
4,408,986 - AO356_19665 0.36 -0.2
4,409,140 + AO356_19665 0.45 -0.2
4,409,296 - AO356_19665 0.54 -0.8
4,409,300 + AO356_19665 0.54 +1.0
4,409,300 + AO356_19665 0.54 -0.3
4,409,300 + AO356_19665 0.54 +0.1
4,409,300 + AO356_19665 0.54 +0.3
4,409,301 - AO356_19665 0.54 -0.2
4,409,301 - AO356_19665 0.54 -0.2
4,409,301 - AO356_19665 0.54 +0.8
4,409,301 - AO356_19665 0.54 +0.4
4,409,321 + AO356_19665 0.56 +1.3
4,409,321 + AO356_19665 0.56 +1.2
4,409,321 + AO356_19665 0.56 +0.3
4,409,322 - AO356_19665 0.56 +0.1
4,409,322 - AO356_19665 0.56 -0.5
4,409,322 - AO356_19665 0.56 +1.2
4,409,322 - AO356_19665 0.56 +0.6
4,409,327 + AO356_19665 0.56 -0.2
4,409,327 + AO356_19665 0.56 +0.1
4,409,327 + AO356_19665 0.56 -0.0
4,409,327 + AO356_19665 0.56 +0.1
4,409,327 + AO356_19665 0.56 -0.9
4,409,327 + AO356_19665 0.56 +0.7
4,409,327 + AO356_19665 0.56 -0.4
4,409,327 + AO356_19665 0.56 -0.0
4,409,327 + AO356_19665 0.56 +0.9
4,409,327 + AO356_19665 0.56 -1.8
4,409,327 + AO356_19665 0.56 +0.4
4,409,327 + AO356_19665 0.56 +0.4
4,409,328 - AO356_19665 0.56 +1.7
4,409,328 - AO356_19665 0.56 +0.6
4,409,328 - AO356_19665 0.56 +0.6
4,409,328 - AO356_19665 0.56 -0.7
4,409,328 - AO356_19665 0.56 -1.3
4,409,328 - AO356_19665 0.56 -1.5
4,409,328 - AO356_19665 0.56 +1.0
4,409,328 - AO356_19665 0.56 +1.3
4,409,328 - AO356_19665 0.56 +0.7
4,409,328 - AO356_19665 0.56 +1.2
4,409,328 - AO356_19665 0.56 -1.7
4,409,328 - AO356_19665 0.56 +0.1
4,409,330 - AO356_19665 0.56 +1.6
4,409,330 - AO356_19665 0.56 -0.2

Or see this region's nucleotide sequence