Strain Fitness in Pseudomonas fluorescens FW300-N2C3 around AO356_18965

Experiment: Choline chloride 500 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAO356_18955 and AO356_18960 are separated by 144 nucleotidesAO356_18960 and AO356_18965 are separated by 105 nucleotidesAO356_18965 and AO356_18970 overlap by 4 nucleotides AO356_18955: AO356_18955 - dienelactone hydrolase, at 4,262,341 to 4,263,132 _18955 AO356_18960: AO356_18960 - hypothetical protein, at 4,263,277 to 4,263,876 _18960 AO356_18965: AO356_18965 - transcriptional regulator, at 4,263,982 to 4,264,659 _18965 AO356_18970: AO356_18970 - histidine kinase, at 4,264,656 to 4,266,002 _18970 Position (kb) 4263 4264 4265Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3 4at 4263.011 kb on + strand, within AO356_18955at 4263.011 kb on + strand, within AO356_18955at 4263.012 kb on - strand, within AO356_18955at 4263.017 kb on + strand, within AO356_18955at 4263.017 kb on + strand, within AO356_18955at 4263.017 kb on + strand, within AO356_18955at 4263.017 kb on + strand, within AO356_18955at 4263.017 kb on + strand, within AO356_18955at 4263.018 kb on - strand, within AO356_18955at 4263.018 kb on - strand, within AO356_18955at 4263.018 kb on - strand, within AO356_18955at 4263.018 kb on - strand, within AO356_18955at 4263.018 kb on - strand, within AO356_18955at 4263.018 kb on - strand, within AO356_18955at 4263.018 kb on - strand, within AO356_18955at 4263.018 kb on - strand, within AO356_18955at 4263.018 kb on - strand, within AO356_18955at 4263.018 kb on - strand, within AO356_18955at 4263.021 kb on - strand, within AO356_18955at 4263.053 kb on + strandat 4263.109 kb on + strandat 4263.109 kb on + strandat 4263.109 kb on + strandat 4263.109 kb on + strandat 4263.109 kb on + strandat 4263.109 kb on + strandat 4263.109 kb on + strandat 4263.109 kb on + strandat 4263.109 kb on + strandat 4263.109 kb on + strandat 4263.110 kb on - strandat 4263.110 kb on - strandat 4263.145 kb on + strandat 4263.145 kb on + strandat 4263.145 kb on + strandat 4263.145 kb on + strandat 4263.167 kb on + strandat 4263.463 kb on + strand, within AO356_18960at 4263.463 kb on + strand, within AO356_18960at 4263.463 kb on + strand, within AO356_18960at 4263.464 kb on - strand, within AO356_18960at 4263.464 kb on - strand, within AO356_18960at 4263.464 kb on - strand, within AO356_18960at 4263.505 kb on + strand, within AO356_18960at 4263.505 kb on + strand, within AO356_18960at 4263.506 kb on - strand, within AO356_18960at 4263.506 kb on - strand, within AO356_18960at 4263.506 kb on - strand, within AO356_18960at 4263.506 kb on - strand, within AO356_18960at 4263.514 kb on + strand, within AO356_18960at 4263.514 kb on + strand, within AO356_18960at 4263.514 kb on + strand, within AO356_18960at 4263.515 kb on - strand, within AO356_18960at 4263.577 kb on + strand, within AO356_18960at 4263.577 kb on + strand, within AO356_18960at 4263.578 kb on - strand, within AO356_18960at 4263.784 kb on - strand, within AO356_18960at 4263.850 kb on + strandat 4263.850 kb on + strandat 4263.850 kb on + strandat 4263.850 kb on + strandat 4263.851 kb on - strandat 4263.851 kb on - strandat 4263.851 kb on - strandat 4263.851 kb on - strandat 4263.851 kb on - strandat 4263.865 kb on + strandat 4263.865 kb on + strandat 4263.865 kb on + strandat 4263.865 kb on + strandat 4263.865 kb on + strandat 4263.866 kb on - strandat 4263.866 kb on - strandat 4263.866 kb on - strandat 4263.874 kb on + strandat 4263.875 kb on - strandat 4263.894 kb on + strandat 4264.093 kb on + strand, within AO356_18965at 4264.094 kb on - strand, within AO356_18965at 4264.273 kb on + strand, within AO356_18965at 4264.273 kb on + strand, within AO356_18965at 4264.273 kb on + strand, within AO356_18965at 4264.274 kb on - strand, within AO356_18965at 4264.274 kb on - strand, within AO356_18965at 4264.459 kb on + strand, within AO356_18965at 4264.460 kb on - strand, within AO356_18965at 4264.563 kb on - strand, within AO356_18965at 4264.633 kb on + strandat 4264.903 kb on - strand, within AO356_18970at 4264.903 kb on - strand, within AO356_18970at 4264.903 kb on - strand, within AO356_18970at 4264.908 kb on + strand, within AO356_18970at 4264.908 kb on + strand, within AO356_18970at 4264.908 kb on + strand, within AO356_18970at 4264.908 kb on + strand, within AO356_18970at 4264.908 kb on + strand, within AO356_18970at 4264.908 kb on + strand, within AO356_18970at 4264.908 kb on + strand, within AO356_18970at 4264.908 kb on + strand, within AO356_18970at 4264.909 kb on - strand, within AO356_18970at 4264.909 kb on - strand, within AO356_18970at 4264.909 kb on - strand, within AO356_18970at 4264.909 kb on - strand, within AO356_18970at 4264.909 kb on - strand, within AO356_18970at 4264.968 kb on + strand, within AO356_18970at 4264.968 kb on + strand, within AO356_18970at 4264.968 kb on + strand, within AO356_18970at 4264.968 kb on + strand, within AO356_18970at 4264.968 kb on + strand, within AO356_18970at 4264.968 kb on + strand, within AO356_18970at 4264.969 kb on - strand, within AO356_18970at 4264.980 kb on + strand, within AO356_18970at 4265.043 kb on + strand, within AO356_18970at 4265.043 kb on + strand, within AO356_18970at 4265.044 kb on - strand, within AO356_18970at 4265.044 kb on - strand, within AO356_18970at 4265.118 kb on + strand, within AO356_18970at 4265.154 kb on + strand, within AO356_18970at 4265.289 kb on - strand, within AO356_18970at 4265.343 kb on + strand, within AO356_18970at 4265.344 kb on - strand, within AO356_18970at 4265.344 kb on - strand, within AO356_18970at 4265.344 kb on - strand, within AO356_18970at 4265.505 kb on - strand, within AO356_18970at 4265.505 kb on - strand, within AO356_18970at 4265.505 kb on - strand, within AO356_18970at 4265.505 kb on - strand, within AO356_18970at 4265.505 kb on - strand, within AO356_18970at 4265.505 kb on - strand, within AO356_18970

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Per-strain Table

Position Strand Gene LocusTag Fraction Choline chloride 500 mM
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4,263,011 + AO356_18955 0.85 +0.8
4,263,011 + AO356_18955 0.85 -0.1
4,263,012 - AO356_18955 0.85 +1.0
4,263,017 + AO356_18955 0.85 +0.9
4,263,017 + AO356_18955 0.85 +0.8
4,263,017 + AO356_18955 0.85 +0.2
4,263,017 + AO356_18955 0.85 +0.5
4,263,017 + AO356_18955 0.85 +0.6
4,263,018 - AO356_18955 0.85 +0.3
4,263,018 - AO356_18955 0.85 +1.5
4,263,018 - AO356_18955 0.85 -0.2
4,263,018 - AO356_18955 0.85 +0.4
4,263,018 - AO356_18955 0.85 +0.4
4,263,018 - AO356_18955 0.85 +0.7
4,263,018 - AO356_18955 0.85 -0.3
4,263,018 - AO356_18955 0.85 -0.4
4,263,018 - AO356_18955 0.85 -0.0
4,263,018 - AO356_18955 0.85 +0.9
4,263,021 - AO356_18955 0.86 +1.0
4,263,053 + +1.8
4,263,109 + +1.6
4,263,109 + +2.1
4,263,109 + +0.4
4,263,109 + +0.4
4,263,109 + -0.6
4,263,109 + +0.9
4,263,109 + +0.9
4,263,109 + +0.6
4,263,109 + +0.7
4,263,109 + +1.6
4,263,110 - +1.5
4,263,110 - +1.2
4,263,145 + -1.1
4,263,145 + -0.5
4,263,145 + +1.5
4,263,145 + +0.4
4,263,167 + +0.2
4,263,463 + AO356_18960 0.31 +3.0
4,263,463 + AO356_18960 0.31 +3.1
4,263,463 + AO356_18960 0.31 +3.0
4,263,464 - AO356_18960 0.31 -1.0
4,263,464 - AO356_18960 0.31 -0.6
4,263,464 - AO356_18960 0.31 -0.2
4,263,505 + AO356_18960 0.38 +3.8
4,263,505 + AO356_18960 0.38 +3.4
4,263,506 - AO356_18960 0.38 -0.7
4,263,506 - AO356_18960 0.38 +1.2
4,263,506 - AO356_18960 0.38 +0.9
4,263,506 - AO356_18960 0.38 +0.7
4,263,514 + AO356_18960 0.40 +3.6
4,263,514 + AO356_18960 0.40 +3.8
4,263,514 + AO356_18960 0.40 +2.9
4,263,515 - AO356_18960 0.40 -2.3
4,263,577 + AO356_18960 0.50 +3.3
4,263,577 + AO356_18960 0.50 +3.5
4,263,578 - AO356_18960 0.50 +2.0
4,263,784 - AO356_18960 0.84 +1.4
4,263,850 + +3.3
4,263,850 + +3.1
4,263,850 + +3.3
4,263,850 + +3.4
4,263,851 - +0.4
4,263,851 - +0.4
4,263,851 - +1.4
4,263,851 - -0.1
4,263,851 - -0.1
4,263,865 + +3.8
4,263,865 + +3.8
4,263,865 + +2.5
4,263,865 + +3.8
4,263,865 + +2.5
4,263,866 - -2.3
4,263,866 - -1.8
4,263,866 - +0.3
4,263,874 + +3.5
4,263,875 - -0.5
4,263,894 + +2.9
4,264,093 + AO356_18965 0.16 +1.7
4,264,094 - AO356_18965 0.17 +0.0
4,264,273 + AO356_18965 0.43 +0.9
4,264,273 + AO356_18965 0.43 -1.7
4,264,273 + AO356_18965 0.43 -2.0
4,264,274 - AO356_18965 0.43 +0.1
4,264,274 - AO356_18965 0.43 -1.3
4,264,459 + AO356_18965 0.70 -0.7
4,264,460 - AO356_18965 0.71 -0.4
4,264,563 - AO356_18965 0.86 -0.1
4,264,633 + +0.2
4,264,903 - AO356_18970 0.18 -0.5
4,264,903 - AO356_18970 0.18 -2.8
4,264,903 - AO356_18970 0.18 +0.2
4,264,908 + AO356_18970 0.19 -1.3
4,264,908 + AO356_18970 0.19 +0.7
4,264,908 + AO356_18970 0.19 -1.1
4,264,908 + AO356_18970 0.19 -2.1
4,264,908 + AO356_18970 0.19 +1.6
4,264,908 + AO356_18970 0.19 -1.1
4,264,908 + AO356_18970 0.19 -0.7
4,264,908 + AO356_18970 0.19 -0.3
4,264,909 - AO356_18970 0.19 -0.8
4,264,909 - AO356_18970 0.19 +0.3
4,264,909 - AO356_18970 0.19 -1.5
4,264,909 - AO356_18970 0.19 +1.0
4,264,909 - AO356_18970 0.19 +1.0
4,264,968 + AO356_18970 0.23 -0.5
4,264,968 + AO356_18970 0.23 +1.1
4,264,968 + AO356_18970 0.23 -2.5
4,264,968 + AO356_18970 0.23 -1.7
4,264,968 + AO356_18970 0.23 -0.3
4,264,968 + AO356_18970 0.23 +0.0
4,264,969 - AO356_18970 0.23 +0.8
4,264,980 + AO356_18970 0.24 +0.4
4,265,043 + AO356_18970 0.29 +0.4
4,265,043 + AO356_18970 0.29 -1.8
4,265,044 - AO356_18970 0.29 +0.2
4,265,044 - AO356_18970 0.29 -1.0
4,265,118 + AO356_18970 0.34 -0.7
4,265,154 + AO356_18970 0.37 -1.3
4,265,289 - AO356_18970 0.47 +0.1
4,265,343 + AO356_18970 0.51 -0.1
4,265,344 - AO356_18970 0.51 +0.9
4,265,344 - AO356_18970 0.51 +0.8
4,265,344 - AO356_18970 0.51 -0.1
4,265,505 - AO356_18970 0.63 -0.1
4,265,505 - AO356_18970 0.63 +0.8
4,265,505 - AO356_18970 0.63 +1.7
4,265,505 - AO356_18970 0.63 +0.9
4,265,505 - AO356_18970 0.63 -0.9
4,265,505 - AO356_18970 0.63 +0.9

Or see this region's nucleotide sequence