Experiment: Choline chloride 500 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt AO356_16485 and AO356_16490 are separated by 172 nucleotides AO356_16490 and AO356_16495 overlap by 4 nucleotides
AO356_16485: AO356_16485 - hypothetical protein, at 3,724,236 to 3,725,960
_16485
AO356_16490: AO356_16490 - glutamyl-tRNA reductase, at 3,726,133 to 3,727,422
_16490
AO356_16495: AO356_16495 - peptide chain release factor 1, at 3,727,419 to 3,728,501
_16495
Position (kb)
3726
3727
3728 Strain fitness (log2 ratio)
-4
-3
-2
-1
0
1 at 3725.186 kb on - strand, within AO356_16485 at 3725.186 kb on - strand, within AO356_16485 at 3725.541 kb on - strand, within AO356_16485 at 3725.543 kb on - strand, within AO356_16485 at 3725.543 kb on - strand, within AO356_16485 at 3725.543 kb on - strand, within AO356_16485 at 3725.543 kb on - strand, within AO356_16485 at 3725.543 kb on - strand, within AO356_16485 at 3725.543 kb on - strand, within AO356_16485 at 3725.543 kb on - strand, within AO356_16485 at 3725.543 kb on - strand, within AO356_16485 at 3725.543 kb on - strand, within AO356_16485 at 3725.675 kb on - strand, within AO356_16485 at 3725.741 kb on - strand, within AO356_16485 at 3725.741 kb on - strand, within AO356_16485 at 3725.741 kb on - strand, within AO356_16485 at 3725.741 kb on - strand, within AO356_16485 at 3725.741 kb on - strand, within AO356_16485 at 3725.741 kb on - strand, within AO356_16485 at 3725.741 kb on - strand, within AO356_16485 at 3725.741 kb on - strand, within AO356_16485 at 3725.955 kb on - strand at 3725.955 kb on - strand at 3725.955 kb on - strand at 3725.955 kb on - strand at 3725.955 kb on - strand at 3725.955 kb on - strand at 3725.955 kb on - strand at 3725.955 kb on - strand at 3725.955 kb on - strand at 3725.955 kb on - strand at 3725.961 kb on - strand at 3725.961 kb on - strand at 3725.961 kb on - strand at 3725.961 kb on - strand at 3725.961 kb on - strand at 3725.961 kb on - strand at 3725.963 kb on - strand at 3725.963 kb on - strand at 3725.963 kb on - strand at 3725.963 kb on - strand at 3726.021 kb on + strand at 3726.021 kb on + strand at 3726.038 kb on + strand at 3726.039 kb on - strand at 3726.058 kb on + strand at 3726.059 kb on - strand at 3726.092 kb on + strand at 3726.092 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction Choline chloride 500 mM remove 3,725,186 - AO356_16485 0.55 -4.0 3,725,186 - AO356_16485 0.55 -1.7 3,725,541 - AO356_16485 0.76 -0.3 3,725,543 - AO356_16485 0.76 -2.2 3,725,543 - AO356_16485 0.76 -1.6 3,725,543 - AO356_16485 0.76 +0.0 3,725,543 - AO356_16485 0.76 -3.3 3,725,543 - AO356_16485 0.76 -1.6 3,725,543 - AO356_16485 0.76 -2.4 3,725,543 - AO356_16485 0.76 -1.2 3,725,543 - AO356_16485 0.76 -1.8 3,725,543 - AO356_16485 0.76 -2.1 3,725,675 - AO356_16485 0.83 -2.5 3,725,741 - AO356_16485 0.87 -1.3 3,725,741 - AO356_16485 0.87 -1.6 3,725,741 - AO356_16485 0.87 -2.2 3,725,741 - AO356_16485 0.87 -0.4 3,725,741 - AO356_16485 0.87 +0.0 3,725,741 - AO356_16485 0.87 -1.0 3,725,741 - AO356_16485 0.87 -2.3 3,725,741 - AO356_16485 0.87 -1.4 3,725,955 - -0.8 3,725,955 - -0.9 3,725,955 - -0.6 3,725,955 - +0.1 3,725,955 - -0.6 3,725,955 - -1.9 3,725,955 - -1.5 3,725,955 - -2.2 3,725,955 - -1.9 3,725,955 - -0.2 3,725,961 - -0.4 3,725,961 - -1.0 3,725,961 - -2.8 3,725,961 - -0.4 3,725,961 - -0.0 3,725,961 - +0.4 3,725,963 - -0.8 3,725,963 - -0.7 3,725,963 - -0.6 3,725,963 - -0.3 3,726,021 + -2.5 3,726,021 + -1.4 3,726,038 + +0.3 3,726,039 - +1.5 3,726,058 + -1.0 3,726,059 - +0.6 3,726,092 + -0.4 3,726,092 + +0.1
Or see this region's nucleotide sequence