Experiment: Choline chloride 500 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt AO356_04260 and AO356_04265 are separated by 288 nucleotides AO356_04265 and AO356_04270 overlap by 7 nucleotides AO356_04270 and AO356_04275 are separated by 192 nucleotides
AO356_04260: AO356_04260 - porin, at 966,930 to 968,240
_04260
AO356_04265: AO356_04265 - anti-sigma factor, at 968,529 to 968,765
_04265
AO356_04270: AO356_04270 - RNA polymerase subunit sigma-24, at 968,759 to 969,370
_04270
AO356_04275: AO356_04275 - 3-oxoacyl-ACP synthase, at 969,563 to 970,684
_04275
Position (kb) 968
969 Strain fitness (log2 ratio) -1
0
1 at 967.552 kb on - strand, within AO356_04260 at 967.681 kb on + strand, within AO356_04260 at 967.682 kb on - strand, within AO356_04260 at 967.682 kb on - strand, within AO356_04260 at 967.682 kb on - strand, within AO356_04260 at 967.759 kb on + strand, within AO356_04260 at 967.769 kb on + strand, within AO356_04260 at 967.870 kb on + strand, within AO356_04260 at 967.870 kb on + strand, within AO356_04260 at 967.870 kb on + strand, within AO356_04260 at 967.870 kb on + strand, within AO356_04260 at 967.870 kb on + strand, within AO356_04260 at 967.871 kb on - strand, within AO356_04260 at 967.894 kb on + strand, within AO356_04260 at 967.894 kb on + strand, within AO356_04260 at 967.894 kb on + strand, within AO356_04260 at 967.933 kb on + strand, within AO356_04260 at 967.933 kb on + strand, within AO356_04260 at 967.933 kb on + strand, within AO356_04260 at 967.933 kb on + strand, within AO356_04260 at 967.934 kb on - strand, within AO356_04260 at 967.934 kb on - strand, within AO356_04260 at 967.934 kb on - strand, within AO356_04260 at 967.945 kb on + strand, within AO356_04260 at 967.945 kb on + strand, within AO356_04260 at 967.960 kb on + strand, within AO356_04260 at 967.960 kb on + strand, within AO356_04260 at 968.000 kb on - strand, within AO356_04260 at 968.032 kb on + strand, within AO356_04260 at 968.032 kb on + strand, within AO356_04260 at 968.033 kb on - strand, within AO356_04260 at 968.033 kb on - strand, within AO356_04260 at 968.033 kb on - strand, within AO356_04260 at 968.053 kb on + strand, within AO356_04260 at 968.053 kb on + strand, within AO356_04260 at 968.260 kb on + strand at 968.261 kb on - strand at 968.265 kb on + strand at 968.265 kb on + strand at 968.265 kb on + strand at 968.265 kb on + strand at 968.265 kb on + strand at 968.265 kb on + strand at 968.265 kb on + strand at 968.266 kb on - strand at 968.266 kb on - strand at 968.266 kb on - strand at 968.266 kb on - strand at 968.450 kb on - strand at 968.476 kb on + strand at 968.476 kb on + strand at 968.863 kb on + strand, within AO356_04270 at 968.863 kb on + strand, within AO356_04270 at 968.909 kb on + strand, within AO356_04270 at 969.117 kb on + strand, within AO356_04270 at 969.118 kb on - strand, within AO356_04270 at 969.118 kb on - strand, within AO356_04270 at 969.261 kb on + strand, within AO356_04270 at 969.262 kb on - strand, within AO356_04270 at 969.310 kb on - strand at 969.521 kb on + strand at 969.521 kb on + strand at 969.522 kb on - strand at 969.654 kb on + strand at 969.654 kb on + strand at 969.654 kb on + strand at 969.655 kb on - strand at 969.655 kb on - strand at 969.700 kb on - strand, within AO356_04275
Per-strain Table
Position Strand Gene LocusTag Fraction Choline chloride 500 mM remove 967,552 - AO356_04260 0.47 +0.2 967,681 + AO356_04260 0.57 +0.7 967,682 - AO356_04260 0.57 -1.7 967,682 - AO356_04260 0.57 +1.7 967,682 - AO356_04260 0.57 +1.2 967,759 + AO356_04260 0.63 -0.0 967,769 + AO356_04260 0.64 +0.2 967,870 + AO356_04260 0.72 +0.1 967,870 + AO356_04260 0.72 -1.3 967,870 + AO356_04260 0.72 +0.3 967,870 + AO356_04260 0.72 +0.3 967,870 + AO356_04260 0.72 -0.0 967,871 - AO356_04260 0.72 +0.9 967,894 + AO356_04260 0.74 -0.2 967,894 + AO356_04260 0.74 +0.1 967,894 + AO356_04260 0.74 -0.0 967,933 + AO356_04260 0.77 -0.7 967,933 + AO356_04260 0.77 -0.3 967,933 + AO356_04260 0.77 -0.7 967,933 + AO356_04260 0.77 -1.4 967,934 - AO356_04260 0.77 +0.4 967,934 - AO356_04260 0.77 -0.6 967,934 - AO356_04260 0.77 -1.0 967,945 + AO356_04260 0.77 -0.3 967,945 + AO356_04260 0.77 +0.9 967,960 + AO356_04260 0.79 -1.5 967,960 + AO356_04260 0.79 +0.7 968,000 - AO356_04260 0.82 -0.3 968,032 + AO356_04260 0.84 -0.5 968,032 + AO356_04260 0.84 +0.4 968,033 - AO356_04260 0.84 -1.1 968,033 - AO356_04260 0.84 +0.5 968,033 - AO356_04260 0.84 +0.6 968,053 + AO356_04260 0.86 -0.9 968,053 + AO356_04260 0.86 +0.2 968,260 + -0.7 968,261 - +1.2 968,265 + -0.7 968,265 + +0.3 968,265 + -0.3 968,265 + -0.7 968,265 + -0.4 968,265 + -1.3 968,265 + +1.3 968,266 - -0.3 968,266 - -0.0 968,266 - +0.4 968,266 - -0.5 968,450 - -1.5 968,476 + +0.4 968,476 + -0.3 968,863 + AO356_04270 0.17 +0.0 968,863 + AO356_04270 0.17 -1.1 968,909 + AO356_04270 0.25 -1.2 969,117 + AO356_04270 0.58 -0.2 969,118 - AO356_04270 0.59 -0.8 969,118 - AO356_04270 0.59 -0.5 969,261 + AO356_04270 0.82 +0.1 969,262 - AO356_04270 0.82 +0.1 969,310 - -0.3 969,521 + +0.8 969,521 + -0.7 969,522 - -0.7 969,654 + +0.3 969,654 + +0.3 969,654 + -0.3 969,655 - +1.4 969,655 - -0.1 969,700 - AO356_04275 0.12 +0.2
Or see this region's nucleotide sequence