Strain Fitness in Pseudomonas fluorescens FW300-N2C3 around AO356_02775

Experiment: Choline chloride 500 mM

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntAO356_02770 and AO356_02775 overlap by 4 nucleotidesAO356_02775 and AO356_02780 overlap by 1 nucleotides AO356_02770: AO356_02770 - nitrite reductase, at 608,880 to 611,333 _02770 AO356_02775: AO356_02775 - nitrite reductase, at 611,330 to 611,647 _02775 AO356_02780: AO356_02780 - nitrate reductase, at 611,647 to 614,364 _02780 Position (kb) 611 612Strain fitness (log2 ratio) -1 0 1 2at 610.428 kb on + strand, within AO356_02770at 610.429 kb on - strand, within AO356_02770at 610.429 kb on - strand, within AO356_02770at 610.482 kb on + strand, within AO356_02770at 610.482 kb on + strand, within AO356_02770at 610.482 kb on + strand, within AO356_02770at 610.483 kb on - strand, within AO356_02770at 610.485 kb on + strand, within AO356_02770at 610.486 kb on - strand, within AO356_02770at 610.581 kb on + strand, within AO356_02770at 610.582 kb on - strand, within AO356_02770at 610.582 kb on - strand, within AO356_02770at 610.582 kb on - strand, within AO356_02770at 610.582 kb on - strand, within AO356_02770at 610.659 kb on + strand, within AO356_02770at 610.659 kb on + strand, within AO356_02770at 610.659 kb on + strand, within AO356_02770at 610.659 kb on + strand, within AO356_02770at 610.660 kb on - strand, within AO356_02770at 610.660 kb on - strand, within AO356_02770at 610.660 kb on - strand, within AO356_02770at 610.666 kb on + strand, within AO356_02770at 610.666 kb on + strand, within AO356_02770at 610.667 kb on - strand, within AO356_02770at 610.667 kb on - strand, within AO356_02770at 610.697 kb on + strand, within AO356_02770at 610.698 kb on - strand, within AO356_02770at 610.773 kb on + strand, within AO356_02770at 610.995 kb on + strand, within AO356_02770at 610.995 kb on + strand, within AO356_02770at 610.995 kb on + strand, within AO356_02770at 610.995 kb on + strand, within AO356_02770at 610.995 kb on + strand, within AO356_02770at 610.996 kb on - strand, within AO356_02770at 610.996 kb on - strand, within AO356_02770at 610.996 kb on - strand, within AO356_02770at 610.996 kb on - strand, within AO356_02770at 610.996 kb on - strand, within AO356_02770at 611.076 kb on + strand, within AO356_02770at 611.076 kb on + strand, within AO356_02770at 611.076 kb on + strand, within AO356_02770at 611.076 kb on + strand, within AO356_02770at 611.076 kb on + strand, within AO356_02770at 611.076 kb on + strand, within AO356_02770at 611.076 kb on + strand, within AO356_02770at 611.077 kb on - strand, within AO356_02770at 611.077 kb on - strand, within AO356_02770at 611.077 kb on - strand, within AO356_02770at 611.077 kb on - strand, within AO356_02770at 611.118 kb on + strandat 611.139 kb on + strandat 611.139 kb on + strandat 611.139 kb on + strandat 611.139 kb on + strandat 611.139 kb on + strandat 611.139 kb on + strandat 611.139 kb on + strandat 611.139 kb on + strandat 611.139 kb on + strandat 611.139 kb on + strandat 611.139 kb on + strandat 611.140 kb on - strandat 611.140 kb on - strandat 611.140 kb on - strandat 611.140 kb on - strandat 611.140 kb on - strandat 611.140 kb on - strandat 611.140 kb on - strandat 611.140 kb on - strandat 611.140 kb on - strandat 611.140 kb on - strandat 611.368 kb on + strand, within AO356_02775at 611.680 kb on + strandat 611.681 kb on - strandat 611.959 kb on + strand, within AO356_02780at 611.959 kb on + strand, within AO356_02780at 611.959 kb on + strand, within AO356_02780at 611.960 kb on - strand, within AO356_02780at 611.960 kb on - strand, within AO356_02780at 611.960 kb on - strand, within AO356_02780at 611.975 kb on + strand, within AO356_02780at 611.975 kb on + strand, within AO356_02780at 611.989 kb on + strand, within AO356_02780at 611.989 kb on + strand, within AO356_02780at 611.989 kb on + strand, within AO356_02780at 611.990 kb on - strand, within AO356_02780at 611.990 kb on - strand, within AO356_02780at 611.990 kb on - strand, within AO356_02780at 611.990 kb on - strand, within AO356_02780at 611.990 kb on - strand, within AO356_02780at 611.992 kb on + strand, within AO356_02780at 611.992 kb on + strand, within AO356_02780at 611.992 kb on + strand, within AO356_02780at 611.992 kb on + strand, within AO356_02780at 611.993 kb on - strand, within AO356_02780at 612.082 kb on + strand, within AO356_02780at 612.082 kb on + strand, within AO356_02780at 612.083 kb on - strand, within AO356_02780at 612.083 kb on - strand, within AO356_02780at 612.121 kb on + strand, within AO356_02780at 612.121 kb on + strand, within AO356_02780at 612.121 kb on + strand, within AO356_02780at 612.121 kb on + strand, within AO356_02780at 612.122 kb on - strand, within AO356_02780at 612.122 kb on - strand, within AO356_02780at 612.165 kb on + strand, within AO356_02780at 612.165 kb on + strand, within AO356_02780at 612.166 kb on - strand, within AO356_02780at 612.430 kb on + strand, within AO356_02780at 612.431 kb on - strand, within AO356_02780

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction Choline chloride 500 mM
remove
610,428 + AO356_02770 0.63 +0.3
610,429 - AO356_02770 0.63 +1.1
610,429 - AO356_02770 0.63 -0.1
610,482 + AO356_02770 0.65 +0.7
610,482 + AO356_02770 0.65 -0.7
610,482 + AO356_02770 0.65 +0.1
610,483 - AO356_02770 0.65 -1.1
610,485 + AO356_02770 0.65 +0.8
610,486 - AO356_02770 0.65 -0.6
610,581 + AO356_02770 0.69 +0.9
610,582 - AO356_02770 0.69 +1.5
610,582 - AO356_02770 0.69 +1.1
610,582 - AO356_02770 0.69 -0.6
610,582 - AO356_02770 0.69 +0.6
610,659 + AO356_02770 0.72 +0.8
610,659 + AO356_02770 0.72 -0.1
610,659 + AO356_02770 0.72 -0.5
610,659 + AO356_02770 0.72 +1.5
610,660 - AO356_02770 0.73 +0.5
610,660 - AO356_02770 0.73 +0.3
610,660 - AO356_02770 0.73 +1.1
610,666 + AO356_02770 0.73 +0.9
610,666 + AO356_02770 0.73 +1.1
610,667 - AO356_02770 0.73 +0.8
610,667 - AO356_02770 0.73 -0.0
610,697 + AO356_02770 0.74 -0.0
610,698 - AO356_02770 0.74 +0.8
610,773 + AO356_02770 0.77 +0.7
610,995 + AO356_02770 0.86 +0.6
610,995 + AO356_02770 0.86 +0.9
610,995 + AO356_02770 0.86 -0.3
610,995 + AO356_02770 0.86 +0.9
610,995 + AO356_02770 0.86 -0.4
610,996 - AO356_02770 0.86 +0.2
610,996 - AO356_02770 0.86 -0.5
610,996 - AO356_02770 0.86 +0.7
610,996 - AO356_02770 0.86 +0.1
610,996 - AO356_02770 0.86 +0.7
611,076 + AO356_02770 0.89 -0.4
611,076 + AO356_02770 0.89 -0.6
611,076 + AO356_02770 0.89 -1.1
611,076 + AO356_02770 0.89 +0.8
611,076 + AO356_02770 0.89 +0.3
611,076 + AO356_02770 0.89 +0.5
611,076 + AO356_02770 0.89 +0.7
611,077 - AO356_02770 0.90 +0.7
611,077 - AO356_02770 0.90 +0.3
611,077 - AO356_02770 0.90 +0.3
611,077 - AO356_02770 0.90 +1.1
611,118 + +0.7
611,139 + +0.4
611,139 + -0.6
611,139 + +1.0
611,139 + +0.9
611,139 + +0.8
611,139 + +0.5
611,139 + -0.0
611,139 + +0.5
611,139 + +1.8
611,139 + +1.1
611,139 + -0.3
611,140 - -0.1
611,140 - +0.0
611,140 - +0.6
611,140 - -1.3
611,140 - +0.5
611,140 - +0.1
611,140 - +1.5
611,140 - +0.8
611,140 - -0.2
611,140 - +0.5
611,368 + AO356_02775 0.12 +0.3
611,680 + -0.6
611,681 - +2.0
611,959 + AO356_02780 0.11 +0.6
611,959 + AO356_02780 0.11 -0.5
611,959 + AO356_02780 0.11 +1.0
611,960 - AO356_02780 0.12 +1.2
611,960 - AO356_02780 0.12 +1.3
611,960 - AO356_02780 0.12 -0.2
611,975 + AO356_02780 0.12 -0.6
611,975 + AO356_02780 0.12 +0.4
611,989 + AO356_02780 0.13 -0.4
611,989 + AO356_02780 0.13 +0.9
611,989 + AO356_02780 0.13 -1.1
611,990 - AO356_02780 0.13 -0.7
611,990 - AO356_02780 0.13 -0.0
611,990 - AO356_02780 0.13 +0.2
611,990 - AO356_02780 0.13 +0.2
611,990 - AO356_02780 0.13 -0.5
611,992 + AO356_02780 0.13 -0.0
611,992 + AO356_02780 0.13 +0.3
611,992 + AO356_02780 0.13 -0.4
611,992 + AO356_02780 0.13 -0.6
611,993 - AO356_02780 0.13 +0.9
612,082 + AO356_02780 0.16 -0.4
612,082 + AO356_02780 0.16 +0.8
612,083 - AO356_02780 0.16 +0.1
612,083 - AO356_02780 0.16 +0.8
612,121 + AO356_02780 0.17 +1.0
612,121 + AO356_02780 0.17 +0.3
612,121 + AO356_02780 0.17 +0.7
612,121 + AO356_02780 0.17 -0.3
612,122 - AO356_02780 0.17 +1.6
612,122 - AO356_02780 0.17 +1.5
612,165 + AO356_02780 0.19 +0.1
612,165 + AO356_02780 0.19 +0.0
612,166 - AO356_02780 0.19 +0.8
612,430 + AO356_02780 0.29 +0.0
612,431 - AO356_02780 0.29 +2.0

Or see this region's nucleotide sequence