Strain Fitness in Shewanella loihica PV-4 around Shew_1608

Experiment: LB

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntShew_1606 and Shew_1607 are separated by 77 nucleotidesShew_1607 and Shew_1608 are separated by 23 nucleotidesShew_1608 and Shew_1609 are separated by 23 nucleotidesShew_1609 and Shew_1610 are separated by 93 nucleotides Shew_1606: Shew_1606 - hypothetical protein (RefSeq), at 1,838,176 to 1,838,508 _1606 Shew_1607: Shew_1607 - thioesterase superfamily protein (RefSeq), at 1,838,586 to 1,839,074 _1607 Shew_1608: Shew_1608 - carbohydrate kinase, FGGY (RefSeq), at 1,839,098 to 1,840,681 _1608 Shew_1609: Shew_1609 - 6-phosphogluconate dehydrogenase, NAD-binding (RefSeq), at 1,840,705 to 1,841,580 _1609 Shew_1610: Shew_1610 - cytidine deaminase (RefSeq), at 1,841,674 to 1,842,564 _1610 Position (kb) 1839 1840 1841Strain fitness (log2 ratio) -2 -1 0 1at 1838.259 kb on - strand, within Shew_1606at 1838.667 kb on + strand, within Shew_1607at 1838.706 kb on + strand, within Shew_1607at 1839.163 kb on + strandat 1839.388 kb on + strand, within Shew_1608at 1839.781 kb on - strand, within Shew_1608at 1839.955 kb on + strand, within Shew_1608at 1839.991 kb on - strand, within Shew_1608at 1840.320 kb on + strand, within Shew_1608at 1840.490 kb on + strand, within Shew_1608at 1840.552 kb on - strandat 1840.621 kb on + strandat 1840.675 kb on + strandat 1840.675 kb on + strandat 1840.775 kb on + strandat 1840.789 kb on + strandat 1840.789 kb on + strandat 1840.806 kb on + strand, within Shew_1609at 1841.529 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction LB
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1,838,259 - Shew_1606 0.25 -0.0
1,838,667 + Shew_1607 0.17 -0.1
1,838,706 + Shew_1607 0.25 +0.2
1,839,163 + +0.3
1,839,388 + Shew_1608 0.18 -0.0
1,839,781 - Shew_1608 0.43 -1.8
1,839,955 + Shew_1608 0.54 +0.4
1,839,991 - Shew_1608 0.56 -0.4
1,840,320 + Shew_1608 0.77 -0.2
1,840,490 + Shew_1608 0.88 -1.0
1,840,552 - +0.6
1,840,621 + -0.3
1,840,675 + -0.2
1,840,675 + +0.3
1,840,775 + -0.3
1,840,789 + -0.1
1,840,789 + -0.4
1,840,806 + Shew_1609 0.12 -0.0
1,841,529 + -0.4

Or see this region's nucleotide sequence