Experiment: LB
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Shew_1606 and Shew_1607 are separated by 77 nucleotides Shew_1607 and Shew_1608 are separated by 23 nucleotides Shew_1608 and Shew_1609 are separated by 23 nucleotides Shew_1609 and Shew_1610 are separated by 93 nucleotides
Shew_1606: Shew_1606 - hypothetical protein (RefSeq), at 1,838,176 to 1,838,508
_1606
Shew_1607: Shew_1607 - thioesterase superfamily protein (RefSeq), at 1,838,586 to 1,839,074
_1607
Shew_1608: Shew_1608 - carbohydrate kinase, FGGY (RefSeq), at 1,839,098 to 1,840,681
_1608
Shew_1609: Shew_1609 - 6-phosphogluconate dehydrogenase, NAD-binding (RefSeq), at 1,840,705 to 1,841,580
_1609
Shew_1610: Shew_1610 - cytidine deaminase (RefSeq), at 1,841,674 to 1,842,564
_1610
Position (kb)
1839
1840
1841 Strain fitness (log2 ratio)
-2
-1
0
1 at 1838.259 kb on - strand, within Shew_1606 at 1838.667 kb on + strand, within Shew_1607 at 1838.706 kb on + strand, within Shew_1607 at 1839.163 kb on + strand at 1839.388 kb on + strand, within Shew_1608 at 1839.781 kb on - strand, within Shew_1608 at 1839.955 kb on + strand, within Shew_1608 at 1839.991 kb on - strand, within Shew_1608 at 1840.320 kb on + strand, within Shew_1608 at 1840.490 kb on + strand, within Shew_1608 at 1840.552 kb on - strand at 1840.621 kb on + strand at 1840.675 kb on + strand at 1840.675 kb on + strand at 1840.775 kb on + strand at 1840.789 kb on + strand at 1840.789 kb on + strand at 1840.806 kb on + strand, within Shew_1609 at 1841.529 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction LB remove 1,838,259 - Shew_1606 0.25 -0.0 1,838,667 + Shew_1607 0.17 -0.1 1,838,706 + Shew_1607 0.25 +0.2 1,839,163 + +0.3 1,839,388 + Shew_1608 0.18 -0.0 1,839,781 - Shew_1608 0.43 -1.8 1,839,955 + Shew_1608 0.54 +0.4 1,839,991 - Shew_1608 0.56 -0.4 1,840,320 + Shew_1608 0.77 -0.2 1,840,490 + Shew_1608 0.88 -1.0 1,840,552 - +0.6 1,840,621 + -0.3 1,840,675 + -0.2 1,840,675 + +0.3 1,840,775 + -0.3 1,840,789 + -0.1 1,840,789 + -0.4 1,840,806 + Shew_1609 0.12 -0.0 1,841,529 + -0.4
Or see this region's nucleotide sequence