Strain Fitness in Shewanella loihica PV-4 around Shew_1353

Experiment: LB

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntflgI and flgJ are separated by 47 nucleotidesflgJ and Shew_1354 are separated by 64 nucleotides Shew_1352: flgI - flagellar basal body P-ring protein (RefSeq), at 1,560,197 to 1,561,288 flgI Shew_1353: flgJ - peptidoglycan hydrolase (RefSeq), at 1,561,336 to 1,562,361 flgJ Shew_1354: Shew_1354 - flagellar hook-associated protein FlgK (RefSeq), at 1,562,426 to 1,564,342 _1354 Position (kb) 1561 1562 1563Strain fitness (log2 ratio) -1 0 1at 1560.534 kb on - strand, within flgIat 1560.599 kb on + strand, within flgIat 1560.656 kb on - strand, within flgIat 1560.656 kb on - strand, within flgIat 1561.077 kb on - strand, within flgIat 1561.077 kb on - strand, within flgIat 1561.446 kb on + strand, within flgJat 1561.928 kb on + strand, within flgJat 1562.229 kb on - strand, within flgJat 1562.337 kb on + strandat 1563.151 kb on + strand, within Shew_1354

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Per-strain Table

Position Strand Gene LocusTag Fraction LB
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1,560,534 - flgI Shew_1352 0.31 -0.3
1,560,599 + flgI Shew_1352 0.37 +0.0
1,560,656 - flgI Shew_1352 0.42 -0.7
1,560,656 - flgI Shew_1352 0.42 +0.1
1,561,077 - flgI Shew_1352 0.81 -0.1
1,561,077 - flgI Shew_1352 0.81 -0.5
1,561,446 + flgJ Shew_1353 0.11 -0.7
1,561,928 + flgJ Shew_1353 0.58 -0.0
1,562,229 - flgJ Shew_1353 0.87 -0.2
1,562,337 + +0.3
1,563,151 + Shew_1354 0.38 -0.3

Or see this region's nucleotide sequence