Experiment: LB
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt nrfA and Shew_0845 are separated by 74 nucleotides Shew_0845 and Shew_0846 are separated by 252 nucleotides Shew_0846 and Shew_0847 are separated by 12 nucleotides
Shew_0844: nrfA - cytochrome c nitrite reductase (RefSeq), at 967,114 to 968,514
nrfA
Shew_0845: Shew_0845 - isochorismatase hydrolase (RefSeq), at 968,589 to 969,131
_0845
Shew_0846: Shew_0846 - nitrogen regulatory protein P-II (RefSeq), at 969,384 to 969,722
_0846
Shew_0847: Shew_0847 - Rh family protein/ammonium transporter (RefSeq), at 969,735 to 970,985
_0847
Position (kb) 969
970 Strain fitness (log2 ratio) -2
-1
0
1 at 968.524 kb on + strand at 968.634 kb on - strand at 968.762 kb on + strand, within Shew_0845 at 968.981 kb on + strand, within Shew_0845 at 969.098 kb on - strand at 969.379 kb on - strand at 969.447 kb on + strand, within Shew_0846 at 969.505 kb on + strand, within Shew_0846 at 969.564 kb on - strand, within Shew_0846 at 970.128 kb on - strand, within Shew_0847 at 970.337 kb on + strand, within Shew_0847 at 970.354 kb on + strand, within Shew_0847 at 970.383 kb on - strand, within Shew_0847 at 970.383 kb on - strand, within Shew_0847 at 970.704 kb on - strand, within Shew_0847
Per-strain Table
Position Strand Gene LocusTag Fraction LB remove 968,524 + +0.2 968,634 - +1.2 968,762 + Shew_0845 0.32 -0.1 968,981 + Shew_0845 0.72 -0.1 969,098 - +0.1 969,379 - +0.6 969,447 + Shew_0846 0.19 +0.3 969,505 + Shew_0846 0.36 -2.1 969,564 - Shew_0846 0.53 -0.2 970,128 - Shew_0847 0.31 +0.1 970,337 + Shew_0847 0.48 +0.4 970,354 + Shew_0847 0.49 +0.0 970,383 - Shew_0847 0.52 -0.1 970,383 - Shew_0847 0.52 -0.5 970,704 - Shew_0847 0.77 -0.1
Or see this region's nucleotide sequence