Experiment: LB
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Shew_0839 and Shew_0840 are separated by 179 nucleotides Shew_0840 and Shew_0841 are separated by 192 nucleotides Shew_0841 and Shew_0842 are separated by 91 nucleotides
Shew_0839: Shew_0839 - WD-40 repeat-containing protein (RefSeq), at 961,898 to 962,866
_0839
Shew_0840: Shew_0840 - peptidylprolyl isomerase, FKBP-type (RefSeq), at 963,046 to 963,813
_0840
Shew_0841: Shew_0841 - hypothetical protein (RefSeq), at 964,006 to 964,380
_0841
Shew_0842: Shew_0842 - two component LuxR family transcriptional regulator (RefSeq), at 964,472 to 965,101
_0842
Position (kb) 963
964 Strain fitness (log2 ratio) -1
0
1
2 at 962.539 kb on - strand, within Shew_0839 at 962.692 kb on + strand, within Shew_0839 at 962.785 kb on + strand at 962.793 kb on - strand at 962.986 kb on - strand at 963.010 kb on - strand at 963.048 kb on - strand at 963.146 kb on - strand, within Shew_0840 at 963.288 kb on - strand, within Shew_0840 at 963.335 kb on + strand, within Shew_0840 at 963.693 kb on + strand, within Shew_0840 at 964.169 kb on - strand, within Shew_0841 at 964.210 kb on - strand, within Shew_0841 at 964.252 kb on - strand, within Shew_0841 at 964.278 kb on + strand, within Shew_0841 at 964.477 kb on + strand at 964.485 kb on - strand at 964.547 kb on + strand, within Shew_0842 at 964.725 kb on + strand, within Shew_0842
Per-strain Table
Position Strand Gene LocusTag Fraction LB remove 962,539 - Shew_0839 0.66 -0.2 962,692 + Shew_0839 0.82 -0.3 962,785 + -0.3 962,793 - +2.3 962,986 - +0.5 963,010 - -0.1 963,048 - +0.0 963,146 - Shew_0840 0.13 +0.0 963,288 - Shew_0840 0.32 -0.0 963,335 + Shew_0840 0.38 -1.1 963,693 + Shew_0840 0.84 -0.3 964,169 - Shew_0841 0.43 +0.2 964,210 - Shew_0841 0.54 +0.1 964,252 - Shew_0841 0.66 -0.3 964,278 + Shew_0841 0.73 +0.2 964,477 + +0.2 964,485 - -0.4 964,547 + Shew_0842 0.12 +0.1 964,725 + Shew_0842 0.40 -0.1
Or see this region's nucleotide sequence