Experiment: LB
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Shew_0111 and Shew_0112 are separated by 22 nucleotides Shew_0112 and Shew_0113 are separated by 28 nucleotides
Shew_0111: Shew_0111 - methyl-accepting chemotaxis sensory transducer with Pas/Pac sensor (RefSeq), at 121,633 to 124,227
_0111
Shew_0112: Shew_0112 - CheW protein (RefSeq), at 124,250 to 124,807
_0112
Shew_0113: Shew_0113 - CheA signal transduction histidine kinase (RefSeq), at 124,836 to 126,896
_0113
Position (kb) 124
125 Strain fitness (log2 ratio) -1
0
1 at 123.571 kb on - strand, within Shew_0111 at 123.898 kb on - strand, within Shew_0111 at 123.898 kb on - strand, within Shew_0111 at 123.898 kb on - strand, within Shew_0111 at 123.933 kb on + strand, within Shew_0111 at 123.935 kb on + strand, within Shew_0111 at 124.276 kb on - strand at 124.400 kb on - strand, within Shew_0112 at 124.439 kb on + strand, within Shew_0112 at 124.454 kb on - strand, within Shew_0112 at 124.733 kb on + strand, within Shew_0112 at 125.225 kb on + strand, within Shew_0113 at 125.225 kb on + strand, within Shew_0113 at 125.225 kb on + strand, within Shew_0113 at 125.227 kb on + strand, within Shew_0113 at 125.227 kb on + strand, within Shew_0113 at 125.233 kb on - strand, within Shew_0113 at 125.235 kb on - strand, within Shew_0113 at 125.308 kb on + strand, within Shew_0113 at 125.308 kb on + strand, within Shew_0113 at 125.316 kb on - strand, within Shew_0113 at 125.316 kb on - strand, within Shew_0113 at 125.338 kb on - strand, within Shew_0113 at 125.408 kb on - strand, within Shew_0113 at 125.526 kb on + strand, within Shew_0113 at 125.651 kb on - strand, within Shew_0113 at 125.656 kb on - strand, within Shew_0113
Per-strain Table
Position Strand Gene LocusTag Fraction LB remove 123,571 - Shew_0111 0.75 -0.1 123,898 - Shew_0111 0.87 +0.1 123,898 - Shew_0111 0.87 +0.1 123,898 - Shew_0111 0.87 -0.2 123,933 + Shew_0111 0.89 -0.1 123,935 + Shew_0111 0.89 +0.6 124,276 - -0.0 124,400 - Shew_0112 0.27 +0.0 124,439 + Shew_0112 0.34 -1.7 124,454 - Shew_0112 0.37 -0.9 124,733 + Shew_0112 0.87 -0.2 125,225 + Shew_0113 0.19 +0.2 125,225 + Shew_0113 0.19 -0.2 125,225 + Shew_0113 0.19 +0.0 125,227 + Shew_0113 0.19 -0.3 125,227 + Shew_0113 0.19 +0.2 125,233 - Shew_0113 0.19 -0.1 125,235 - Shew_0113 0.19 +0.0 125,308 + Shew_0113 0.23 +0.0 125,308 + Shew_0113 0.23 -0.2 125,316 - Shew_0113 0.23 -0.3 125,316 - Shew_0113 0.23 +0.1 125,338 - Shew_0113 0.24 +0.3 125,408 - Shew_0113 0.28 +0.1 125,526 + Shew_0113 0.33 +0.1 125,651 - Shew_0113 0.40 -0.5 125,656 - Shew_0113 0.40 +0.1
Or see this region's nucleotide sequence