Strain Fitness in Shewanella loihica PV-4 around Shew_0074

Experiment: LB

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntShew_0073 and Shew_0074 are separated by 99 nucleotidesShew_0074 and Shew_0075 overlap by 4 nucleotidesShew_0075 and Shew_0076 are separated by 292 nucleotidesShew_0076 and Shew_0077 are separated by 21 nucleotides Shew_0073: Shew_0073 - coproporphyrinogen III oxidase (RefSeq), at 86,819 to 88,162 _0073 Shew_0074: Shew_0074 - no description, at 88,262 to 88,885 _0074 Shew_0075: Shew_0075 - hypothetical protein (RefSeq), at 88,882 to 89,097 _0075 Shew_0076: Shew_0076 - antibiotic biosynthesis monooxygenase (RefSeq), at 89,390 to 89,677 _0076 Shew_0077: Shew_0077 - GCN5-related N-acetyltransferase (RefSeq), at 89,699 to 90,652 _0077 Position (kb) 88 89Strain fitness (log2 ratio) -1 0 1at 87.296 kb on - strand, within Shew_0073at 87.296 kb on - strand, within Shew_0073at 87.302 kb on - strand, within Shew_0073at 87.608 kb on + strand, within Shew_0073at 87.641 kb on + strand, within Shew_0073at 87.801 kb on + strand, within Shew_0073at 88.106 kb on + strandat 88.114 kb on - strandat 88.122 kb on + strandat 88.167 kb on + strandat 88.526 kb on + strand, within Shew_0074at 88.665 kb on + strand, within Shew_0074at 88.665 kb on + strand, within Shew_0074at 88.673 kb on - strand, within Shew_0074at 88.673 kb on - strand, within Shew_0074at 88.673 kb on - strand, within Shew_0074at 88.673 kb on - strand, within Shew_0074at 88.755 kb on + strand, within Shew_0074at 88.847 kb on + strandat 89.081 kb on - strandat 89.113 kb on - strandat 89.291 kb on + strandat 89.299 kb on - strandat 89.531 kb on + strand, within Shew_0076at 89.567 kb on + strand, within Shew_0076at 89.572 kb on + strand, within Shew_0076at 89.671 kb on + strandat 89.671 kb on + strandat 89.671 kb on + strandat 89.840 kb on - strand, within Shew_0077

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Per-strain Table

Position Strand Gene LocusTag Fraction LB
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87,296 - Shew_0073 0.35 -0.0
87,296 - Shew_0073 0.35 +0.1
87,302 - Shew_0073 0.36 +0.1
87,608 + Shew_0073 0.59 -0.3
87,641 + Shew_0073 0.61 +0.1
87,801 + Shew_0073 0.73 +0.3
88,106 + -0.0
88,114 - -0.3
88,122 + -0.0
88,167 + -0.1
88,526 + Shew_0074 0.42 -0.0
88,665 + Shew_0074 0.65 -0.2
88,665 + Shew_0074 0.65 -0.1
88,673 - Shew_0074 0.66 -1.4
88,673 - Shew_0074 0.66 -0.2
88,673 - Shew_0074 0.66 -0.3
88,673 - Shew_0074 0.66 -0.7
88,755 + Shew_0074 0.79 -0.8
88,847 + +0.6
89,081 - +0.0
89,113 - +0.3
89,291 + +0.2
89,299 - +0.1
89,531 + Shew_0076 0.49 +0.1
89,567 + Shew_0076 0.61 -0.0
89,572 + Shew_0076 0.63 +0.2
89,671 + +0.3
89,671 + +0.0
89,671 + +0.0
89,840 - Shew_0077 0.15 -0.2

Or see this region's nucleotide sequence