Experiment: Inosine (N)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Dshi_4187 and Dshi_4188 are separated by 13 nucleotides Dshi_4188 and Dshi_4189 are separated by 95 nucleotides Dshi_4189 and Dshi_4190 are separated by 163 nucleotides
Dshi_4187: Dshi_4187 - binding-protein-dependent transport systems inner membrane component (RefSeq), at 33,135 to 33,890
_4187
Dshi_4188: Dshi_4188 - binding-protein-dependent transport systems inner membrane component (RefSeq), at 33,904 to 34,665
_4188
Dshi_4189: Dshi_4189 - ABC-type nitrate/sulfonate/bicarbonate transport systems periplasmic components-like protein (RefSeq), at 34,761 to 35,777
_4189
Dshi_4190: Dshi_4190 - hypothetical protein (RefSeq), at 35,941 to 37,218
_4190
Position (kb) 34
35
36 Strain fitness (log2 ratio) -2
-1
0
1
2 at 33.852 kb on + strand at 34.437 kb on + strand, within Dshi_4188 at 34.607 kb on + strand at 34.752 kb on - strand at 34.836 kb on + strand at 34.894 kb on + strand, within Dshi_4189 at 34.975 kb on - strand, within Dshi_4189 at 35.378 kb on - strand, within Dshi_4189 at 35.397 kb on - strand, within Dshi_4189 at 35.631 kb on + strand, within Dshi_4189 at 35.743 kb on - strand at 35.845 kb on + strand at 35.893 kb on + strand at 36.013 kb on - strand at 36.378 kb on - strand, within Dshi_4190
Per-strain Table
Position Strand Gene LocusTag Fraction Inosine (N) remove 33,852 + -0.3 34,437 + Dshi_4188 0.70 -1.5 34,607 + -1.3 34,752 - -0.2 34,836 + -0.9 34,894 + Dshi_4189 0.13 -1.8 34,975 - Dshi_4189 0.21 +0.1 35,378 - Dshi_4189 0.61 -0.2 35,397 - Dshi_4189 0.63 -0.9 35,631 + Dshi_4189 0.86 +1.9 35,743 - +1.5 35,845 + +0.2 35,893 + -0.6 36,013 - +0.3 36,378 - Dshi_4190 0.34 +0.3
Or see this region's nucleotide sequence