Experiment: Inosine (N)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Dshi_2477 and Dshi_2478 are separated by 63 nucleotides Dshi_2478 and Dshi_2479 are separated by 6 nucleotides Dshi_2479 and Dshi_2480 are separated by 60 nucleotides
Dshi_2477: Dshi_2477 - transcriptional regulator, AsnC family (RefSeq), at 2,630,248 to 2,630,712
_2477
Dshi_2478: Dshi_2478 - Lysine exporter protein (LYSE/YGGA) (RefSeq), at 2,630,776 to 2,631,372
_2478
Dshi_2479: Dshi_2479 - transcriptional regulator, LysR family (RefSeq), at 2,631,379 to 2,632,347
_2479
Dshi_2480: Dshi_2480 - short-chain dehydrogenase/reductase SDR (RefSeq), at 2,632,408 to 2,633,268
_2480
Position (kb)
2631
2632
2633 Strain fitness (log2 ratio)
-2
-1
0
1
2
3 at 2630.388 kb on - strand, within Dshi_2477 at 2630.421 kb on + strand, within Dshi_2477 at 2630.421 kb on + strand, within Dshi_2477 at 2630.429 kb on - strand, within Dshi_2477 at 2630.446 kb on + strand, within Dshi_2477 at 2630.450 kb on + strand, within Dshi_2477 at 2630.450 kb on + strand, within Dshi_2477 at 2630.475 kb on + strand, within Dshi_2477 at 2630.510 kb on - strand, within Dshi_2477 at 2630.515 kb on + strand, within Dshi_2477 at 2630.523 kb on - strand, within Dshi_2477 at 2630.525 kb on + strand, within Dshi_2477 at 2630.535 kb on + strand, within Dshi_2477 at 2630.538 kb on - strand, within Dshi_2477 at 2630.557 kb on - strand, within Dshi_2477 at 2630.575 kb on + strand, within Dshi_2477 at 2630.584 kb on - strand, within Dshi_2477 at 2630.659 kb on - strand, within Dshi_2477 at 2630.846 kb on + strand, within Dshi_2478 at 2630.854 kb on - strand, within Dshi_2478 at 2630.862 kb on - strand, within Dshi_2478 at 2630.862 kb on - strand, within Dshi_2478 at 2630.909 kb on + strand, within Dshi_2478 at 2630.923 kb on - strand, within Dshi_2478 at 2630.997 kb on + strand, within Dshi_2478 at 2631.114 kb on + strand, within Dshi_2478 at 2631.258 kb on - strand, within Dshi_2478 at 2631.319 kb on - strand at 2631.352 kb on - strand at 2631.423 kb on + strand at 2631.492 kb on - strand, within Dshi_2479 at 2631.575 kb on - strand, within Dshi_2479 at 2631.643 kb on - strand, within Dshi_2479 at 2631.824 kb on - strand, within Dshi_2479 at 2632.099 kb on - strand, within Dshi_2479 at 2632.102 kb on + strand, within Dshi_2479 at 2632.399 kb on - strand at 2632.421 kb on + strand at 2632.429 kb on - strand at 2632.515 kb on + strand, within Dshi_2480 at 2632.648 kb on - strand, within Dshi_2480 at 2632.651 kb on + strand, within Dshi_2480 at 2632.696 kb on + strand, within Dshi_2480 at 2632.696 kb on + strand, within Dshi_2480 at 2632.696 kb on + strand, within Dshi_2480 at 2632.704 kb on - strand, within Dshi_2480 at 2632.704 kb on - strand, within Dshi_2480 at 2632.704 kb on - strand, within Dshi_2480 at 2632.704 kb on - strand, within Dshi_2480 at 2632.704 kb on - strand, within Dshi_2480 at 2632.741 kb on + strand, within Dshi_2480 at 2632.743 kb on + strand, within Dshi_2480 at 2632.770 kb on - strand, within Dshi_2480 at 2632.851 kb on + strand, within Dshi_2480 at 2632.878 kb on + strand, within Dshi_2480 at 2632.878 kb on + strand, within Dshi_2480 at 2632.878 kb on + strand, within Dshi_2480 at 2632.886 kb on - strand, within Dshi_2480 at 2632.909 kb on - strand, within Dshi_2480 at 2632.963 kb on + strand, within Dshi_2480 at 2632.999 kb on - strand, within Dshi_2480 at 2633.064 kb on - strand, within Dshi_2480 at 2633.076 kb on - strand, within Dshi_2480 at 2633.139 kb on + strand, within Dshi_2480 at 2633.147 kb on - strand, within Dshi_2480 at 2633.147 kb on - strand, within Dshi_2480 at 2633.150 kb on + strand, within Dshi_2480 at 2633.228 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction Inosine (N) remove 2,630,388 - Dshi_2477 0.30 -0.7 2,630,421 + Dshi_2477 0.37 +0.6 2,630,421 + Dshi_2477 0.37 -0.6 2,630,429 - Dshi_2477 0.39 -0.8 2,630,446 + Dshi_2477 0.43 +0.4 2,630,450 + Dshi_2477 0.43 +0.6 2,630,450 + Dshi_2477 0.43 +0.1 2,630,475 + Dshi_2477 0.49 +0.6 2,630,510 - Dshi_2477 0.56 -0.4 2,630,515 + Dshi_2477 0.57 -0.1 2,630,523 - Dshi_2477 0.59 +0.1 2,630,525 + Dshi_2477 0.60 -0.7 2,630,535 + Dshi_2477 0.62 -0.0 2,630,538 - Dshi_2477 0.62 -0.2 2,630,557 - Dshi_2477 0.66 +0.0 2,630,575 + Dshi_2477 0.70 -0.4 2,630,584 - Dshi_2477 0.72 -0.2 2,630,659 - Dshi_2477 0.88 -0.4 2,630,846 + Dshi_2478 0.12 +0.3 2,630,854 - Dshi_2478 0.13 +0.3 2,630,862 - Dshi_2478 0.14 -0.6 2,630,862 - Dshi_2478 0.14 +1.0 2,630,909 + Dshi_2478 0.22 -0.7 2,630,923 - Dshi_2478 0.25 +0.9 2,630,997 + Dshi_2478 0.37 -0.3 2,631,114 + Dshi_2478 0.57 -0.3 2,631,258 - Dshi_2478 0.81 +0.4 2,631,319 - +0.4 2,631,352 - -0.5 2,631,423 + -0.5 2,631,492 - Dshi_2479 0.12 -0.5 2,631,575 - Dshi_2479 0.20 -0.4 2,631,643 - Dshi_2479 0.27 -0.8 2,631,824 - Dshi_2479 0.46 -0.6 2,632,099 - Dshi_2479 0.74 -0.7 2,632,102 + Dshi_2479 0.75 -0.6 2,632,399 - +0.6 2,632,421 + +0.5 2,632,429 - -0.7 2,632,515 + Dshi_2480 0.12 -0.0 2,632,648 - Dshi_2480 0.28 +2.3 2,632,651 + Dshi_2480 0.28 +0.2 2,632,696 + Dshi_2480 0.33 -0.5 2,632,696 + Dshi_2480 0.33 -0.0 2,632,696 + Dshi_2480 0.33 -0.8 2,632,704 - Dshi_2480 0.34 -0.1 2,632,704 - Dshi_2480 0.34 -0.4 2,632,704 - Dshi_2480 0.34 -0.4 2,632,704 - Dshi_2480 0.34 -0.8 2,632,704 - Dshi_2480 0.34 -0.2 2,632,741 + Dshi_2480 0.39 -0.3 2,632,743 + Dshi_2480 0.39 -2.1 2,632,770 - Dshi_2480 0.42 -1.6 2,632,851 + Dshi_2480 0.51 -0.4 2,632,878 + Dshi_2480 0.55 -0.5 2,632,878 + Dshi_2480 0.55 -1.1 2,632,878 + Dshi_2480 0.55 -1.4 2,632,886 - Dshi_2480 0.56 -0.0 2,632,909 - Dshi_2480 0.58 -1.2 2,632,963 + Dshi_2480 0.64 -0.0 2,632,999 - Dshi_2480 0.69 -0.7 2,633,064 - Dshi_2480 0.76 -0.7 2,633,076 - Dshi_2480 0.78 +0.6 2,633,139 + Dshi_2480 0.85 +3.1 2,633,147 - Dshi_2480 0.86 -0.7 2,633,147 - Dshi_2480 0.86 +0.8 2,633,150 + Dshi_2480 0.86 +1.8 2,633,228 + -0.2
Or see this region's nucleotide sequence