Strain Fitness in Dinoroseobacter shibae DFL-12 around Dshi_2362

Experiment: Inosine (N)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDshi_2360 and Dshi_2361 overlap by 8 nucleotidesDshi_2361 and Dshi_2362 overlap by 4 nucleotidesDshi_2362 and Dshi_2363 are separated by 1 nucleotidesDshi_2363 and Dshi_2364 are separated by 361 nucleotides Dshi_2360: Dshi_2360 - urease accessory protein UreG (RefSeq), at 2,495,217 to 2,495,825 _2360 Dshi_2361: Dshi_2361 - Carboxymuconolactone decarboxylase (RefSeq), at 2,495,818 to 2,496,201 _2361 Dshi_2362: Dshi_2362 - Urease accessory protein UreF (RefSeq), at 2,496,198 to 2,496,830 _2362 Dshi_2363: Dshi_2363 - UreE urease accessory domain protein (RefSeq), at 2,496,832 to 2,497,314 _2363 Dshi_2364: Dshi_2364 - hypothetical protein (RefSeq), at 2,497,676 to 2,497,882 _2364 Position (kb) 2496 2497Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2at 2495.212 kb on + strandat 2495.334 kb on - strand, within Dshi_2360at 2495.388 kb on - strand, within Dshi_2360at 2495.405 kb on + strand, within Dshi_2360at 2495.438 kb on - strand, within Dshi_2360at 2495.438 kb on - strand, within Dshi_2360at 2495.502 kb on + strand, within Dshi_2360at 2495.616 kb on + strand, within Dshi_2360at 2495.632 kb on + strand, within Dshi_2360at 2495.700 kb on - strand, within Dshi_2360at 2495.725 kb on - strand, within Dshi_2360at 2495.738 kb on + strand, within Dshi_2360at 2495.746 kb on - strand, within Dshi_2360at 2495.751 kb on - strand, within Dshi_2360at 2495.946 kb on - strand, within Dshi_2361at 2495.997 kb on - strand, within Dshi_2361at 2496.069 kb on - strandat 2496.257 kb on + strandat 2496.386 kb on + strand, within Dshi_2362at 2496.434 kb on - strand, within Dshi_2362at 2496.534 kb on + strand, within Dshi_2362at 2496.555 kb on - strand, within Dshi_2362at 2496.580 kb on + strand, within Dshi_2362at 2496.676 kb on + strand, within Dshi_2362at 2496.676 kb on + strand, within Dshi_2362at 2496.676 kb on + strand, within Dshi_2362at 2496.688 kb on + strand, within Dshi_2362at 2496.688 kb on + strand, within Dshi_2362at 2496.746 kb on + strand, within Dshi_2362at 2496.754 kb on - strand, within Dshi_2362at 2496.854 kb on - strandat 2496.866 kb on - strandat 2496.897 kb on - strand, within Dshi_2363at 2496.897 kb on - strand, within Dshi_2363at 2497.069 kb on + strand, within Dshi_2363at 2497.139 kb on - strand, within Dshi_2363at 2497.166 kb on - strand, within Dshi_2363at 2497.254 kb on + strand, within Dshi_2363at 2497.399 kb on - strandat 2497.404 kb on - strandat 2497.428 kb on + strandat 2497.476 kb on - strandat 2497.483 kb on - strandat 2497.507 kb on + strandat 2497.507 kb on + strandat 2497.515 kb on - strandat 2497.561 kb on - strandat 2497.728 kb on + strand, within Dshi_2364at 2497.745 kb on + strand, within Dshi_2364at 2497.799 kb on - strand, within Dshi_2364

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Per-strain Table

Position Strand Gene LocusTag Fraction Inosine (N)
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2,495,212 + +0.2
2,495,334 - Dshi_2360 0.19 -1.8
2,495,388 - Dshi_2360 0.28 -0.3
2,495,405 + Dshi_2360 0.31 -1.8
2,495,438 - Dshi_2360 0.36 +0.2
2,495,438 - Dshi_2360 0.36 -1.8
2,495,502 + Dshi_2360 0.47 -3.8
2,495,616 + Dshi_2360 0.66 -2.4
2,495,632 + Dshi_2360 0.68 -2.2
2,495,700 - Dshi_2360 0.79 -2.0
2,495,725 - Dshi_2360 0.83 -1.4
2,495,738 + Dshi_2360 0.86 -1.9
2,495,746 - Dshi_2360 0.87 -1.3
2,495,751 - Dshi_2360 0.88 -0.8
2,495,946 - Dshi_2361 0.33 -0.6
2,495,997 - Dshi_2361 0.47 -0.5
2,496,069 - -1.0
2,496,257 + -1.4
2,496,386 + Dshi_2362 0.30 -1.0
2,496,434 - Dshi_2362 0.37 -2.9
2,496,534 + Dshi_2362 0.53 -1.7
2,496,555 - Dshi_2362 0.56 +0.0
2,496,580 + Dshi_2362 0.60 -1.8
2,496,676 + Dshi_2362 0.76 -2.1
2,496,676 + Dshi_2362 0.76 -2.8
2,496,676 + Dshi_2362 0.76 -1.4
2,496,688 + Dshi_2362 0.77 -3.1
2,496,688 + Dshi_2362 0.77 -1.0
2,496,746 + Dshi_2362 0.87 -1.2
2,496,754 - Dshi_2362 0.88 -2.0
2,496,854 - -1.8
2,496,866 - -0.9
2,496,897 - Dshi_2363 0.13 -0.2
2,496,897 - Dshi_2363 0.13 -0.9
2,497,069 + Dshi_2363 0.49 -1.8
2,497,139 - Dshi_2363 0.64 -1.5
2,497,166 - Dshi_2363 0.69 +0.3
2,497,254 + Dshi_2363 0.87 -1.4
2,497,399 - -1.1
2,497,404 - -1.4
2,497,428 + -3.0
2,497,476 - +0.2
2,497,483 - -1.6
2,497,507 + +1.8
2,497,507 + +0.0
2,497,515 - -1.6
2,497,561 - -1.6
2,497,728 + Dshi_2364 0.25 -1.1
2,497,745 + Dshi_2364 0.33 -0.5
2,497,799 - Dshi_2364 0.59 -1.3

Or see this region's nucleotide sequence