Experiment: Inosine (N)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Dshi_2360 and Dshi_2361 overlap by 8 nucleotides Dshi_2361 and Dshi_2362 overlap by 4 nucleotides Dshi_2362 and Dshi_2363 are separated by 1 nucleotides Dshi_2363 and Dshi_2364 are separated by 361 nucleotides
Dshi_2360: Dshi_2360 - urease accessory protein UreG (RefSeq), at 2,495,217 to 2,495,825
_2360
Dshi_2361: Dshi_2361 - Carboxymuconolactone decarboxylase (RefSeq), at 2,495,818 to 2,496,201
_2361
Dshi_2362: Dshi_2362 - Urease accessory protein UreF (RefSeq), at 2,496,198 to 2,496,830
_2362
Dshi_2363: Dshi_2363 - UreE urease accessory domain protein (RefSeq), at 2,496,832 to 2,497,314
_2363
Dshi_2364: Dshi_2364 - hypothetical protein (RefSeq), at 2,497,676 to 2,497,882
_2364
Position (kb)
2496
2497 Strain fitness (log2 ratio)
-4
-3
-2
-1
0
1
2 at 2495.212 kb on + strand at 2495.334 kb on - strand, within Dshi_2360 at 2495.388 kb on - strand, within Dshi_2360 at 2495.405 kb on + strand, within Dshi_2360 at 2495.438 kb on - strand, within Dshi_2360 at 2495.438 kb on - strand, within Dshi_2360 at 2495.502 kb on + strand, within Dshi_2360 at 2495.616 kb on + strand, within Dshi_2360 at 2495.632 kb on + strand, within Dshi_2360 at 2495.700 kb on - strand, within Dshi_2360 at 2495.725 kb on - strand, within Dshi_2360 at 2495.738 kb on + strand, within Dshi_2360 at 2495.746 kb on - strand, within Dshi_2360 at 2495.751 kb on - strand, within Dshi_2360 at 2495.946 kb on - strand, within Dshi_2361 at 2495.997 kb on - strand, within Dshi_2361 at 2496.069 kb on - strand at 2496.257 kb on + strand at 2496.386 kb on + strand, within Dshi_2362 at 2496.434 kb on - strand, within Dshi_2362 at 2496.534 kb on + strand, within Dshi_2362 at 2496.555 kb on - strand, within Dshi_2362 at 2496.580 kb on + strand, within Dshi_2362 at 2496.676 kb on + strand, within Dshi_2362 at 2496.676 kb on + strand, within Dshi_2362 at 2496.676 kb on + strand, within Dshi_2362 at 2496.688 kb on + strand, within Dshi_2362 at 2496.688 kb on + strand, within Dshi_2362 at 2496.746 kb on + strand, within Dshi_2362 at 2496.754 kb on - strand, within Dshi_2362 at 2496.854 kb on - strand at 2496.866 kb on - strand at 2496.897 kb on - strand, within Dshi_2363 at 2496.897 kb on - strand, within Dshi_2363 at 2497.069 kb on + strand, within Dshi_2363 at 2497.139 kb on - strand, within Dshi_2363 at 2497.166 kb on - strand, within Dshi_2363 at 2497.254 kb on + strand, within Dshi_2363 at 2497.399 kb on - strand at 2497.404 kb on - strand at 2497.428 kb on + strand at 2497.476 kb on - strand at 2497.483 kb on - strand at 2497.507 kb on + strand at 2497.507 kb on + strand at 2497.515 kb on - strand at 2497.561 kb on - strand at 2497.728 kb on + strand, within Dshi_2364 at 2497.745 kb on + strand, within Dshi_2364 at 2497.799 kb on - strand, within Dshi_2364
Per-strain Table
Position Strand Gene LocusTag Fraction Inosine (N) remove 2,495,212 + +0.2 2,495,334 - Dshi_2360 0.19 -1.8 2,495,388 - Dshi_2360 0.28 -0.3 2,495,405 + Dshi_2360 0.31 -1.8 2,495,438 - Dshi_2360 0.36 +0.2 2,495,438 - Dshi_2360 0.36 -1.8 2,495,502 + Dshi_2360 0.47 -3.8 2,495,616 + Dshi_2360 0.66 -2.4 2,495,632 + Dshi_2360 0.68 -2.2 2,495,700 - Dshi_2360 0.79 -2.0 2,495,725 - Dshi_2360 0.83 -1.4 2,495,738 + Dshi_2360 0.86 -1.9 2,495,746 - Dshi_2360 0.87 -1.3 2,495,751 - Dshi_2360 0.88 -0.8 2,495,946 - Dshi_2361 0.33 -0.6 2,495,997 - Dshi_2361 0.47 -0.5 2,496,069 - -1.0 2,496,257 + -1.4 2,496,386 + Dshi_2362 0.30 -1.0 2,496,434 - Dshi_2362 0.37 -2.9 2,496,534 + Dshi_2362 0.53 -1.7 2,496,555 - Dshi_2362 0.56 +0.0 2,496,580 + Dshi_2362 0.60 -1.8 2,496,676 + Dshi_2362 0.76 -2.1 2,496,676 + Dshi_2362 0.76 -2.8 2,496,676 + Dshi_2362 0.76 -1.4 2,496,688 + Dshi_2362 0.77 -3.1 2,496,688 + Dshi_2362 0.77 -1.0 2,496,746 + Dshi_2362 0.87 -1.2 2,496,754 - Dshi_2362 0.88 -2.0 2,496,854 - -1.8 2,496,866 - -0.9 2,496,897 - Dshi_2363 0.13 -0.2 2,496,897 - Dshi_2363 0.13 -0.9 2,497,069 + Dshi_2363 0.49 -1.8 2,497,139 - Dshi_2363 0.64 -1.5 2,497,166 - Dshi_2363 0.69 +0.3 2,497,254 + Dshi_2363 0.87 -1.4 2,497,399 - -1.1 2,497,404 - -1.4 2,497,428 + -3.0 2,497,476 - +0.2 2,497,483 - -1.6 2,497,507 + +1.8 2,497,507 + +0.0 2,497,515 - -1.6 2,497,561 - -1.6 2,497,728 + Dshi_2364 0.25 -1.1 2,497,745 + Dshi_2364 0.33 -0.5 2,497,799 - Dshi_2364 0.59 -1.3
Or see this region's nucleotide sequence