Strain Fitness in Dinoroseobacter shibae DFL-12 around Dshi_1138

Experiment: Inosine (N)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDshi_1137 and Dshi_1138 are separated by 246 nucleotidesDshi_1138 and Dshi_1139 are separated by 271 nucleotides Dshi_1137: Dshi_1137 - DNA topoisomerase I (RefSeq), at 1,162,114 to 1,164,816 _1137 Dshi_1138: Dshi_1138 - DNA protecting protein DprA (RefSeq), at 1,165,063 to 1,166,202 _1138 Dshi_1139: Dshi_1139 - peptidase U62 modulator of DNA gyrase (RefSeq), at 1,166,474 to 1,167,895 _1139 Position (kb) 1165 1166 1167Strain fitness (log2 ratio) -2 -1 0 1at 1164.912 kb on - strandat 1164.994 kb on + strandat 1165.040 kb on + strandat 1165.075 kb on + strandat 1165.083 kb on - strandat 1165.129 kb on - strandat 1165.223 kb on - strand, within Dshi_1138at 1165.223 kb on - strand, within Dshi_1138at 1165.254 kb on + strand, within Dshi_1138at 1165.328 kb on - strand, within Dshi_1138at 1165.412 kb on + strand, within Dshi_1138at 1165.494 kb on - strand, within Dshi_1138at 1165.496 kb on - strand, within Dshi_1138at 1165.543 kb on + strand, within Dshi_1138at 1165.587 kb on - strand, within Dshi_1138at 1165.598 kb on - strand, within Dshi_1138at 1165.601 kb on + strand, within Dshi_1138at 1165.609 kb on - strand, within Dshi_1138at 1165.638 kb on + strand, within Dshi_1138at 1165.737 kb on + strand, within Dshi_1138at 1165.747 kb on + strand, within Dshi_1138at 1165.771 kb on + strand, within Dshi_1138at 1165.771 kb on + strand, within Dshi_1138at 1165.779 kb on - strand, within Dshi_1138at 1165.853 kb on + strand, within Dshi_1138at 1165.854 kb on + strand, within Dshi_1138at 1165.901 kb on + strand, within Dshi_1138at 1165.904 kb on - strand, within Dshi_1138at 1165.904 kb on - strand, within Dshi_1138at 1165.909 kb on - strand, within Dshi_1138at 1165.918 kb on - strand, within Dshi_1138at 1165.922 kb on + strand, within Dshi_1138at 1165.945 kb on - strand, within Dshi_1138at 1165.963 kb on - strand, within Dshi_1138at 1165.964 kb on + strand, within Dshi_1138at 1166.021 kb on + strand, within Dshi_1138at 1166.090 kb on + strandat 1166.090 kb on + strandat 1166.095 kb on + strandat 1166.098 kb on - strandat 1166.099 kb on - strandat 1166.105 kb on + strandat 1166.115 kb on + strandat 1166.115 kb on + strandat 1166.115 kb on + strandat 1166.115 kb on + strandat 1166.136 kb on + strandat 1166.136 kb on + strandat 1166.139 kb on + strandat 1166.154 kb on + strandat 1166.154 kb on + strandat 1166.162 kb on + strandat 1166.162 kb on - strandat 1166.171 kb on + strandat 1166.182 kb on - strandat 1166.204 kb on + strandat 1166.204 kb on + strandat 1166.204 kb on + strandat 1166.204 kb on + strandat 1166.204 kb on + strandat 1166.212 kb on - strandat 1166.212 kb on - strandat 1166.227 kb on - strandat 1166.266 kb on + strandat 1166.274 kb on - strandat 1166.298 kb on + strandat 1166.301 kb on - strandat 1166.303 kb on + strandat 1166.306 kb on - strandat 1166.306 kb on - strandat 1166.306 kb on - strandat 1166.306 kb on - strandat 1166.306 kb on - strandat 1166.306 kb on - strandat 1166.306 kb on - strandat 1166.309 kb on + strandat 1166.309 kb on + strandat 1166.343 kb on + strandat 1166.362 kb on - strandat 1166.447 kb on + strandat 1166.455 kb on - strandat 1166.455 kb on - strandat 1166.455 kb on - strandat 1166.461 kb on + strandat 1166.580 kb on - strandat 1166.604 kb on + strandat 1166.654 kb on + strand, within Dshi_1139at 1166.664 kb on + strand, within Dshi_1139at 1166.670 kb on + strand, within Dshi_1139at 1166.696 kb on - strand, within Dshi_1139at 1166.700 kb on + strand, within Dshi_1139at 1166.700 kb on + strand, within Dshi_1139at 1166.708 kb on - strand, within Dshi_1139at 1166.738 kb on - strand, within Dshi_1139at 1166.818 kb on + strand, within Dshi_1139at 1166.818 kb on + strand, within Dshi_1139at 1166.818 kb on + strand, within Dshi_1139at 1166.818 kb on + strand, within Dshi_1139at 1166.818 kb on + strand, within Dshi_1139at 1166.818 kb on + strand, within Dshi_1139at 1166.818 kb on + strand, within Dshi_1139at 1166.818 kb on + strand, within Dshi_1139at 1166.818 kb on + strand, within Dshi_1139at 1166.818 kb on + strand, within Dshi_1139at 1166.818 kb on + strand, within Dshi_1139at 1166.826 kb on - strand, within Dshi_1139at 1166.826 kb on - strand, within Dshi_1139at 1166.826 kb on - strand, within Dshi_1139at 1166.826 kb on - strand, within Dshi_1139at 1166.826 kb on - strand, within Dshi_1139at 1166.826 kb on - strand, within Dshi_1139at 1166.964 kb on - strand, within Dshi_1139at 1166.981 kb on - strand, within Dshi_1139at 1166.999 kb on - strand, within Dshi_1139at 1167.043 kb on + strand, within Dshi_1139at 1167.043 kb on + strand, within Dshi_1139at 1167.085 kb on - strand, within Dshi_1139at 1167.101 kb on + strand, within Dshi_1139at 1167.117 kb on + strand, within Dshi_1139at 1167.126 kb on - strand, within Dshi_1139

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Per-strain Table

Position Strand Gene LocusTag Fraction Inosine (N)
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1,164,912 - -0.8
1,164,994 + -0.7
1,165,040 + +0.4
1,165,075 + +0.1
1,165,083 - +0.3
1,165,129 - -0.2
1,165,223 - Dshi_1138 0.14 +0.3
1,165,223 - Dshi_1138 0.14 -0.0
1,165,254 + Dshi_1138 0.17 -0.1
1,165,328 - Dshi_1138 0.23 -0.0
1,165,412 + Dshi_1138 0.31 +0.7
1,165,494 - Dshi_1138 0.38 +0.8
1,165,496 - Dshi_1138 0.38 +0.1
1,165,543 + Dshi_1138 0.42 +0.7
1,165,587 - Dshi_1138 0.46 +0.5
1,165,598 - Dshi_1138 0.47 +0.2
1,165,601 + Dshi_1138 0.47 +1.1
1,165,609 - Dshi_1138 0.48 -0.2
1,165,638 + Dshi_1138 0.50 -0.5
1,165,737 + Dshi_1138 0.59 +0.1
1,165,747 + Dshi_1138 0.60 +0.9
1,165,771 + Dshi_1138 0.62 -2.3
1,165,771 + Dshi_1138 0.62 +1.1
1,165,779 - Dshi_1138 0.63 +0.3
1,165,853 + Dshi_1138 0.69 +0.4
1,165,854 + Dshi_1138 0.69 +0.3
1,165,901 + Dshi_1138 0.74 +0.2
1,165,904 - Dshi_1138 0.74 -0.8
1,165,904 - Dshi_1138 0.74 -0.0
1,165,909 - Dshi_1138 0.74 +0.3
1,165,918 - Dshi_1138 0.75 -0.2
1,165,922 + Dshi_1138 0.75 +1.1
1,165,945 - Dshi_1138 0.77 -0.0
1,165,963 - Dshi_1138 0.79 +0.3
1,165,964 + Dshi_1138 0.79 +0.1
1,166,021 + Dshi_1138 0.84 +0.7
1,166,090 + -0.5
1,166,090 + -0.4
1,166,095 + +0.2
1,166,098 - -1.1
1,166,099 - -0.8
1,166,105 + +0.4
1,166,115 + -0.6
1,166,115 + +0.8
1,166,115 + -0.1
1,166,115 + +0.2
1,166,136 + -0.1
1,166,136 + +0.1
1,166,139 + -0.7
1,166,154 + +0.3
1,166,154 + +0.0
1,166,162 + -0.1
1,166,162 - +0.2
1,166,171 + +0.1
1,166,182 - -0.5
1,166,204 + +0.2
1,166,204 + -0.3
1,166,204 + +1.7
1,166,204 + -2.2
1,166,204 + +0.6
1,166,212 - -1.3
1,166,212 - -0.2
1,166,227 - +1.7
1,166,266 + +0.7
1,166,274 - +1.3
1,166,298 + +0.4
1,166,301 - +0.3
1,166,303 + +1.5
1,166,306 - +0.5
1,166,306 - +0.1
1,166,306 - -0.7
1,166,306 - -0.1
1,166,306 - +0.8
1,166,306 - +0.6
1,166,306 - +0.4
1,166,309 + +0.5
1,166,309 + +0.3
1,166,343 + +0.6
1,166,362 - +1.2
1,166,447 + -0.1
1,166,455 - +0.2
1,166,455 - +0.3
1,166,455 - -0.0
1,166,461 + -0.8
1,166,580 - -0.3
1,166,604 + -0.8
1,166,654 + Dshi_1139 0.13 +0.4
1,166,664 + Dshi_1139 0.13 +0.8
1,166,670 + Dshi_1139 0.14 +0.1
1,166,696 - Dshi_1139 0.16 +0.9
1,166,700 + Dshi_1139 0.16 -0.8
1,166,700 + Dshi_1139 0.16 -0.5
1,166,708 - Dshi_1139 0.16 +0.4
1,166,738 - Dshi_1139 0.19 -1.3
1,166,818 + Dshi_1139 0.24 -0.4
1,166,818 + Dshi_1139 0.24 +0.0
1,166,818 + Dshi_1139 0.24 +1.2
1,166,818 + Dshi_1139 0.24 -0.2
1,166,818 + Dshi_1139 0.24 +0.8
1,166,818 + Dshi_1139 0.24 -0.3
1,166,818 + Dshi_1139 0.24 +0.3
1,166,818 + Dshi_1139 0.24 -0.1
1,166,818 + Dshi_1139 0.24 +0.5
1,166,818 + Dshi_1139 0.24 -0.2
1,166,818 + Dshi_1139 0.24 -0.3
1,166,826 - Dshi_1139 0.25 +0.9
1,166,826 - Dshi_1139 0.25 -0.2
1,166,826 - Dshi_1139 0.25 -1.1
1,166,826 - Dshi_1139 0.25 +0.1
1,166,826 - Dshi_1139 0.25 -0.5
1,166,826 - Dshi_1139 0.25 +1.4
1,166,964 - Dshi_1139 0.34 -0.2
1,166,981 - Dshi_1139 0.36 +0.5
1,166,999 - Dshi_1139 0.37 +0.1
1,167,043 + Dshi_1139 0.40 +0.8
1,167,043 + Dshi_1139 0.40 +0.6
1,167,085 - Dshi_1139 0.43 +0.2
1,167,101 + Dshi_1139 0.44 -0.5
1,167,117 + Dshi_1139 0.45 +0.2
1,167,126 - Dshi_1139 0.46 +0.3

Or see this region's nucleotide sequence