Experiment: Formate/Acetate-Sulfate (60/30-30 mM) with Casaminos 0.05% without Molybdate/Tungstate
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt DVU0583 and DVU0584 are separated by 131 nucleotides DVU0584 and DVU0585 are separated by 162 nucleotides
DVU0583: DVU0583 - lipoprotein, putative (TIGR), at 647,938 to 649,209
DVU0583
DVU0584: DVU0584 - transposase, putative (TIGR), at 649,341 to 650,213
DVU0584
DVU0585: DVU0585 - conserved hypothetical protein (TIGR), at 650,376 to 652,769
DVU0585
Position (kb) 649
650
651 Strain fitness (log2 ratio) -1
0
1
2 at 648.354 kb on - strand, within DVU0583 at 648.453 kb on + strand, within DVU0583 at 648.453 kb on + strand, within DVU0583 at 648.461 kb on - strand, within DVU0583 at 648.523 kb on - strand, within DVU0583 at 648.588 kb on + strand, within DVU0583 at 648.850 kb on + strand, within DVU0583 at 648.858 kb on + strand, within DVU0583 at 648.859 kb on - strand, within DVU0583 at 648.907 kb on + strand, within DVU0583 at 648.946 kb on + strand, within DVU0583 at 648.974 kb on + strand, within DVU0583 at 649.078 kb on + strand, within DVU0583 at 649.098 kb on + strand at 649.101 kb on - strand at 649.113 kb on + strand at 649.169 kb on + strand at 649.177 kb on - strand at 649.192 kb on - strand at 649.204 kb on + strand at 649.204 kb on + strand at 649.212 kb on - strand at 649.247 kb on + strand at 649.247 kb on + strand at 649.247 kb on + strand at 649.269 kb on + strand at 649.367 kb on - strand at 649.499 kb on + strand, within DVU0584 at 649.509 kb on + strand, within DVU0584 at 649.539 kb on - strand, within DVU0584 at 649.629 kb on - strand, within DVU0584 at 649.713 kb on + strand, within DVU0584 at 649.725 kb on + strand, within DVU0584 at 649.733 kb on - strand, within DVU0584 at 649.738 kb on + strand, within DVU0584 at 649.746 kb on - strand, within DVU0584 at 649.786 kb on + strand, within DVU0584 at 649.799 kb on - strand, within DVU0584 at 649.829 kb on - strand, within DVU0584 at 649.893 kb on - strand, within DVU0584 at 649.935 kb on - strand, within DVU0584 at 649.951 kb on + strand, within DVU0584 at 649.951 kb on - strand, within DVU0584 at 649.993 kb on + strand, within DVU0584 at 650.069 kb on + strand, within DVU0584 at 650.077 kb on - strand, within DVU0584 at 650.250 kb on + strand at 650.278 kb on - strand at 650.311 kb on - strand at 650.362 kb on - strand at 650.383 kb on + strand at 650.407 kb on + strand at 650.407 kb on + strand at 650.407 kb on + strand at 650.487 kb on - strand at 650.487 kb on - strand at 650.511 kb on + strand at 650.516 kb on + strand at 650.564 kb on - strand at 650.566 kb on + strand at 650.574 kb on - strand at 650.721 kb on + strand, within DVU0585 at 650.724 kb on - strand, within DVU0585 at 650.737 kb on - strand, within DVU0585 at 650.743 kb on + strand, within DVU0585 at 650.774 kb on + strand, within DVU0585 at 650.897 kb on - strand, within DVU0585 at 650.971 kb on + strand, within DVU0585 at 651.046 kb on + strand, within DVU0585 at 651.101 kb on - strand, within DVU0585 at 651.205 kb on - strand, within DVU0585 at 651.209 kb on - strand, within DVU0585
Per-strain Table
Position Strand Gene LocusTag Fraction Formate/Acetate-Sulfate (60/30-30 mM) with Casaminos 0.05% without Molybdate/Tungstate remove 648,354 - DVU0583 0.33 +0.1 648,453 + DVU0583 0.40 -0.1 648,453 + DVU0583 0.40 +0.3 648,461 - DVU0583 0.41 +0.5 648,523 - DVU0583 0.46 -0.2 648,588 + DVU0583 0.51 -0.8 648,850 + DVU0583 0.72 +0.3 648,858 + DVU0583 0.72 -0.4 648,859 - DVU0583 0.72 -0.3 648,907 + DVU0583 0.76 +0.2 648,946 + DVU0583 0.79 +0.2 648,974 + DVU0583 0.81 +0.4 649,078 + DVU0583 0.90 -0.4 649,098 + +2.2 649,101 - -0.0 649,113 + -0.2 649,169 + +0.3 649,177 - -0.0 649,192 - -0.8 649,204 + +0.6 649,204 + +0.4 649,212 - +0.6 649,247 + -0.1 649,247 + -0.0 649,247 + -1.1 649,269 + -0.8 649,367 - -0.2 649,499 + DVU0584 0.18 -0.4 649,509 + DVU0584 0.19 +1.2 649,539 - DVU0584 0.23 -0.6 649,629 - DVU0584 0.33 -0.6 649,713 + DVU0584 0.43 -0.0 649,725 + DVU0584 0.44 -0.4 649,733 - DVU0584 0.45 -0.5 649,738 + DVU0584 0.45 -0.6 649,746 - DVU0584 0.46 -0.4 649,786 + DVU0584 0.51 -0.9 649,799 - DVU0584 0.52 -0.6 649,829 - DVU0584 0.56 +0.4 649,893 - DVU0584 0.63 -1.4 649,935 - DVU0584 0.68 -0.1 649,951 + DVU0584 0.70 -0.6 649,951 - DVU0584 0.70 -0.9 649,993 + DVU0584 0.75 -0.6 650,069 + DVU0584 0.83 -1.3 650,077 - DVU0584 0.84 -0.7 650,250 + +0.4 650,278 - -0.1 650,311 - +0.2 650,362 - +2.2 650,383 + -1.0 650,407 + -0.1 650,407 + -0.2 650,407 + -0.6 650,487 - -0.6 650,487 - +0.2 650,511 + -0.5 650,516 + +0.1 650,564 - -0.1 650,566 + +1.2 650,574 - +0.0 650,721 + DVU0585 0.14 -0.9 650,724 - DVU0585 0.15 -0.0 650,737 - DVU0585 0.15 -0.2 650,743 + DVU0585 0.15 +0.8 650,774 + DVU0585 0.17 -0.2 650,897 - DVU0585 0.22 +0.6 650,971 + DVU0585 0.25 -0.6 651,046 + DVU0585 0.28 -0.6 651,101 - DVU0585 0.30 +0.9 651,205 - DVU0585 0.35 +1.5 651,209 - DVU0585 0.35 +1.2
Or see this region's nucleotide sequence