Strain Fitness in Pantoea sp. MT58 around IAI47_14220

Experiment: Survival; Treatment=GW247 (pH 5.4); TreatmentDuration=0.5hrs; Outgrowth=LBkan50

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Survival; Treatment=GW247 (pH 5.4); TreatmentDuration=0.5hrs; Outgrowth=LBkan50
3,002,565	-		IAI47_14215	0.24	+0.0
3,002,692	-		IAI47_14215	0.34	+1.4
3,002,705	+		IAI47_14215	0.35	-2.8
3,002,745	-		IAI47_14215	0.38	+0.3
3,002,745	-		IAI47_14215	0.38	-0.2
3,002,745	-		IAI47_14215	0.38	+1.0
3,002,748	+		IAI47_14215	0.38	-0.2
3,002,749	-		IAI47_14215	0.38	-0.1
3,002,764	-		IAI47_14215	0.40	-0.9
3,002,802	+		IAI47_14215	0.42	-1.7
3,002,802	+		IAI47_14215	0.42	-0.7
3,002,823	-		IAI47_14215	0.44	+4.8
3,002,843	-		IAI47_14215	0.46	+2.2
3,002,860	-		IAI47_14215	0.47	-2.0
3,002,891	+		IAI47_14215	0.49	+1.4
3,002,892	-		IAI47_14215	0.49	+0.4
3,002,892	-		IAI47_14215	0.49	-0.6
3,002,913	-		IAI47_14215	0.51	-0.5
3,002,960	+		IAI47_14215	0.54	-0.6
3,002,988	+		IAI47_14215	0.56	+0.8
3,002,989	-		IAI47_14215	0.57	-0.1
3,002,989	-		IAI47_14215	0.57	+0.4
3,002,991	-		IAI47_14215	0.57	-0.2
3,003,044	+		IAI47_14215	0.61	+0.5
3,003,045	-		IAI47_14215	0.61	+0.1
3,003,065	-		IAI47_14215	0.62	-1.5
3,003,122	-		IAI47_14215	0.67	-0.6
3,003,134	+		IAI47_14215	0.67	-0.3
3,003,135	-		IAI47_14215	0.68	-0.5
3,003,135	-		IAI47_14215	0.68	-0.1
3,003,146	+		IAI47_14215	0.68	+0.4
3,003,146	+		IAI47_14215	0.68	+0.9
3,003,146	+		IAI47_14215	0.68	-0.1
3,003,147	-		IAI47_14215	0.68	-0.1
3,003,149	+		IAI47_14215	0.69	+0.0
3,003,149	+		IAI47_14215	0.69	-0.3
3,003,190	+		IAI47_14215	0.72	-1.9
3,003,194	+		IAI47_14215	0.72	-0.4
3,003,212	+		IAI47_14215	0.73	-1.2
3,003,212	+		IAI47_14215	0.73	+1.1
3,003,212	+		IAI47_14215	0.73	+1.4
3,003,212	+		IAI47_14215	0.73	-2.1
3,003,233	-		IAI47_14215	0.75	+1.8
3,003,294	+		IAI47_14215	0.80	+0.3
3,003,295	-		IAI47_14215	0.80	+1.6
3,003,299	+		IAI47_14215	0.80	+1.9
3,003,300	-		IAI47_14215	0.80	-1.6
3,003,308	+		IAI47_14215	0.81	+2.3
3,003,348	+		IAI47_14215	0.84	-1.3
3,003,348	+		IAI47_14215	0.84	-0.2
3,003,349	-		IAI47_14215	0.84	-1.9
3,003,349	-		IAI47_14215	0.84	+0.6
3,003,349	-		IAI47_14215	0.84	+1.1
3,003,388	+		IAI47_14215	0.87	+0.2
3,003,388	+		IAI47_14215	0.87	+1.1
3,003,388	+		IAI47_14215	0.87	+1.5
3,003,394	+		IAI47_14215	0.87	+0.5
3,003,394	+		IAI47_14215	0.87	-1.4
3,003,394	+		IAI47_14215	0.87	+1.4
3,003,394	+		IAI47_14215	0.87	+0.0
3,003,395	-		IAI47_14215	0.87	+1.4
3,003,395	-		IAI47_14215	0.87	-0.1
3,003,395	-		IAI47_14215	0.87	-0.9
3,003,395	-		IAI47_14215	0.87	+2.7
3,003,395	-		IAI47_14215	0.87	+0.4
3,003,395	-		IAI47_14215	0.87	-0.2
3,003,398	+		IAI47_14215	0.87	+0.9
3,003,398	+		IAI47_14215	0.87	+1.7
3,003,398	+		IAI47_14215	0.87	+0.2
3,003,398	+		IAI47_14215	0.87	+0.6
3,003,399	-		IAI47_14215	0.88	+1.0
3,003,525	-				-0.7
3,003,572	-				+1.8
3,003,587	-				-0.2
3,003,625	+				-1.0
3,003,625	+				+1.6
3,003,626	-				+1.3
3,003,626	-				+1.6
3,003,660	+				+0.0
3,003,695	+				-0.5
3,003,695	+				+1.2
3,003,696	-				+2.2
3,003,696	-				-0.1
3,003,700	+				-1.7
3,003,700	+				+0.1
3,003,701	-				-0.2
3,003,748	+				-0.6
3,003,750	+				+0.8
3,003,750	+				-2.0
3,003,750	+				-0.4
3,003,750	+				-1.4
3,003,750	+				-2.4
3,003,750	+				+1.9
3,003,750	+				-2.4
3,003,750	+				-0.2
3,003,750	+				-2.1
3,003,750	+				+0.8
3,003,751	-				-0.6
3,003,751	-				+2.2
3,003,751	-				+0.1
3,003,751	-				-0.0
3,003,751	-				-2.9
3,003,751	-				-0.9
3,003,771	+				-1.6
3,003,771	+				-0.7
3,003,841	+		IAI47_14220	0.11	-1.2
3,003,842	-		IAI47_14220	0.11	+1.6
3,003,842	-		IAI47_14220	0.11	-1.7
3,003,843	+		IAI47_14220	0.11	-2.6
3,003,844	+		IAI47_14220	0.11	-0.7
3,003,844	+		IAI47_14220	0.11	-1.3
3,003,844	+		IAI47_14220	0.11	-0.8
3,003,844	+		IAI47_14220	0.11	+0.0
3,003,845	-		IAI47_14220	0.11	+2.2
3,003,845	-		IAI47_14220	0.11	+0.4
3,003,845	-		IAI47_14220	0.11	-0.6
3,003,847	+		IAI47_14220	0.11	+2.2
3,003,848	-		IAI47_14220	0.11	-0.1
3,003,848	-		IAI47_14220	0.11	+1.1
3,003,850	+		IAI47_14220	0.11	+0.3
3,003,851	-		IAI47_14220	0.11	-1.6
3,003,872	+		IAI47_14220	0.12	-1.5
3,003,872	+		IAI47_14220	0.12	+0.9
3,003,873	-		IAI47_14220	0.12	-0.5
3,003,873	-		IAI47_14220	0.12	+0.8
3,003,876	+		IAI47_14220	0.12	+1.4
3,003,876	+		IAI47_14220	0.12	+0.1
3,003,876	+		IAI47_14220	0.12	+1.4
3,003,877	-		IAI47_14220	0.12	+0.9
3,003,877	-		IAI47_14220	0.12	-0.6
3,003,877	-		IAI47_14220	0.12	+0.0
3,003,877	-		IAI47_14220	0.12	-1.6
3,003,877	-		IAI47_14220	0.12	+1.1
3,003,901	+		IAI47_14220	0.13	+0.3
3,003,918	-		IAI47_14220	0.14	+0.6
3,003,938	+		IAI47_14220	0.15	+1.4
3,003,938	+		IAI47_14220	0.15	-2.4
3,003,938	+		IAI47_14220	0.15	+1.3
3,003,939	-		IAI47_14220	0.15	-0.2
3,003,950	+		IAI47_14220	0.15	-0.2
3,003,950	+		IAI47_14220	0.15	+0.6
3,003,950	+		IAI47_14220	0.15	-0.2
3,003,950	+		IAI47_14220	0.15	+1.6
3,003,951	-		IAI47_14220	0.15	-0.7
3,003,961	+		IAI47_14220	0.16	-1.2
3,003,961	+		IAI47_14220	0.16	-1.2
3,003,991	+		IAI47_14220	0.17	+3.1
3,003,995	+		IAI47_14220	0.17	-0.8
3,003,995	+		IAI47_14220	0.17	-0.4
3,003,995	+		IAI47_14220	0.17	+0.1
3,003,995	+		IAI47_14220	0.17	-0.3
3,003,995	+		IAI47_14220	0.17	+1.0
3,003,995	+		IAI47_14220	0.17	-0.7
3,003,995	+		IAI47_14220	0.17	+1.1
3,003,996	-		IAI47_14220	0.17	-0.2
3,003,996	-		IAI47_14220	0.17	-0.5
3,003,996	-		IAI47_14220	0.17	+0.1
3,004,013	-		IAI47_14220	0.18	+0.4
3,004,013	-		IAI47_14220	0.18	+1.9
3,004,049	-		IAI47_14220	0.19	-0.8
3,004,049	-		IAI47_14220	0.19	+1.1
3,004,089	-		IAI47_14220	0.21	-1.2
3,004,089	-		IAI47_14220	0.21	+0.8
3,004,089	-		IAI47_14220	0.21	-0.0
3,004,153	+		IAI47_14220	0.23	-1.3
3,004,153	+		IAI47_14220	0.23	-2.2
3,004,153	+		IAI47_14220	0.23	-0.7
3,004,155	+		IAI47_14220	0.23	+2.9
3,004,155	+		IAI47_14220	0.23	-0.4
3,004,155	+		IAI47_14220	0.23	-0.3
3,004,155	+		IAI47_14220	0.23	+0.0
3,004,156	-		IAI47_14220	0.23	-1.0
3,004,185	-		IAI47_14220	0.24	-2.9
3,004,209	+		IAI47_14220	0.25	-0.9
3,004,209	+		IAI47_14220	0.25	+0.3
3,004,209	+		IAI47_14220	0.25	-0.5
3,004,210	-		IAI47_14220	0.25	-1.0
3,004,210	-		IAI47_14220	0.25	+0.3
3,004,210	-		IAI47_14220	0.25	-0.4
3,004,210	-		IAI47_14220	0.25	-1.1
3,004,257	+		IAI47_14220	0.27	+3.2
3,004,257	+		IAI47_14220	0.27	-0.1
3,004,258	-		IAI47_14220	0.27	-1.2
3,004,267	+		IAI47_14220	0.28	-0.4
3,004,267	+		IAI47_14220	0.28	-0.8
3,004,267	+		IAI47_14220	0.28	+2.1
3,004,267	+		IAI47_14220	0.28	+0.4
3,004,267	+		IAI47_14220	0.28	-2.0
3,004,268	-		IAI47_14220	0.28	+0.8
3,004,268	-		IAI47_14220	0.28	-2.1
3,004,268	-		IAI47_14220	0.28	-0.3
3,004,268	-		IAI47_14220	0.28	+2.3
3,004,278	-		IAI47_14220	0.28	+0.6
3,004,288	+		IAI47_14220	0.29	+0.9
3,004,288	+		IAI47_14220	0.29	+0.0
3,004,288	+		IAI47_14220	0.29	-2.1
3,004,289	-		IAI47_14220	0.29	+0.8
3,004,289	-		IAI47_14220	0.29	+3.3
3,004,289	-		IAI47_14220	0.29	-0.4
3,004,336	+		IAI47_14220	0.30	-0.7
3,004,337	-		IAI47_14220	0.30	-3.7
3,004,364	-		IAI47_14220	0.31	-2.1
3,004,364	-		IAI47_14220	0.31	+1.3
3,004,364	-		IAI47_14220	0.31	-0.2
3,004,479	+		IAI47_14220	0.36	+1.4
3,004,479	+		IAI47_14220	0.36	-1.3
3,004,480	-		IAI47_14220	0.36	-1.4
3,004,480	-		IAI47_14220	0.36	-0.2
3,004,486	+		IAI47_14220	0.36	+0.6
3,004,486	+		IAI47_14220	0.36	-1.0
3,004,486	+		IAI47_14220	0.36	+0.8
3,004,486	+		IAI47_14220	0.36	-0.5
3,004,487	-		IAI47_14220	0.36	-0.3
3,004,550	-		IAI47_14220	0.39	+0.6
3,004,550	-		IAI47_14220	0.39	-0.9
3,004,591	+		IAI47_14220	0.40	-0.7
3,004,591	+		IAI47_14220	0.40	-1.9
3,004,591	+		IAI47_14220	0.40	-2.3
3,004,591	+		IAI47_14220	0.40	+3.2
3,004,591	+		IAI47_14220	0.40	-0.3
3,004,591	+		IAI47_14220	0.40	-1.7
3,004,591	+		IAI47_14220	0.40	+0.0
3,004,591	+		IAI47_14220	0.40	-1.2
3,004,592	+		IAI47_14220	0.40	-1.0
3,004,592	-		IAI47_14220	0.40	-0.6
3,004,592	-		IAI47_14220	0.40	-1.0
3,004,592	-		IAI47_14220	0.40	+0.4
3,004,592	-		IAI47_14220	0.40	-1.0
3,004,592	-		IAI47_14220	0.40	-1.2
3,004,610	+		IAI47_14220	0.41	-2.9
3,004,610	+		IAI47_14220	0.41	-0.5
3,004,611	-		IAI47_14220	0.41	-0.6
3,004,706	-		IAI47_14220	0.45	-0.5
3,004,707	-		IAI47_14220	0.45	-0.6
3,004,707	-		IAI47_14220	0.45	-2.5
3,004,738	+		IAI47_14220	0.46	+0.0
3,004,739	-		IAI47_14220	0.46	+1.0
3,004,739	-		IAI47_14220	0.46	+0.6
3,004,759	+		IAI47_14220	0.47	-0.6
3,004,759	+		IAI47_14220	0.47	+1.4
3,004,759	+		IAI47_14220	0.47	-1.4
3,004,760	-		IAI47_14220	0.47	+0.0
3,004,760	-		IAI47_14220	0.47	+1.0
3,004,760	-		IAI47_14220	0.47	-1.4
3,004,792	+		IAI47_14220	0.48	+1.1
3,004,793	-		IAI47_14220	0.48	-0.7
3,004,810	+		IAI47_14220	0.49	+1.1
3,004,810	+		IAI47_14220	0.49	+2.9
3,004,810	+		IAI47_14220	0.49	-0.2
3,004,811	-		IAI47_14220	0.49	+0.4
3,004,811	-		IAI47_14220	0.49	-0.5
3,004,811	-		IAI47_14220	0.49	-1.2
3,004,889	-		IAI47_14220	0.52	+0.3
3,004,909	+		IAI47_14220	0.53	-0.7
3,004,909	+		IAI47_14220	0.53	+0.7
3,004,909	+		IAI47_14220	0.53	+1.1
3,004,910	-		IAI47_14220	0.53	-0.3
3,004,910	-		IAI47_14220	0.53	-0.9
3,004,910	-		IAI47_14220	0.53	-1.0
3,004,935	+		IAI47_14220	0.54	+0.4
3,004,987	+		IAI47_14220	0.56	-1.6
3,004,987	+		IAI47_14220	0.56	-1.3
3,004,988	-		IAI47_14220	0.56	+1.0
3,004,988	-		IAI47_14220	0.56	+0.0
3,005,013	-		IAI47_14220	0.57	-1.8
3,005,029	+		IAI47_14220	0.58	-1.2
3,005,029	+		IAI47_14220	0.58	-2.6
3,005,029	+		IAI47_14220	0.58	+1.7
3,005,029	+		IAI47_14220	0.58	+0.4
3,005,030	-		IAI47_14220	0.58	-0.7
3,005,032	+		IAI47_14220	0.58	+0.5
3,005,032	+		IAI47_14220	0.58	-2.6
3,005,032	+		IAI47_14220	0.58	+2.4
3,005,033	-		IAI47_14220	0.58	-0.5
3,005,033	-		IAI47_14220	0.58	+0.0
3,005,033	-		IAI47_14220	0.58	-1.7
3,005,033	-		IAI47_14220	0.58	-1.1
3,005,033	-		IAI47_14220	0.58	+0.5
3,005,069	+		IAI47_14220	0.59	-1.6
3,005,134	+		IAI47_14220	0.62	-0.6
3,005,134	+		IAI47_14220	0.62	-1.7
3,005,134	+		IAI47_14220	0.62	+1.1
3,005,135	-		IAI47_14220	0.62	-1.4
3,005,135	-		IAI47_14220	0.62	+1.8
3,005,135	-		IAI47_14220	0.62	+0.6
3,005,151	-		IAI47_14220	0.62	-1.6
3,005,151	-		IAI47_14220	0.62	+0.7
3,005,230	+		IAI47_14220	0.65	+0.3
3,005,230	+		IAI47_14220	0.65	-2.4
3,005,230	+		IAI47_14220	0.65	+0.8
3,005,230	+		IAI47_14220	0.65	+0.7
3,005,230	+		IAI47_14220	0.65	+0.5
3,005,230	+		IAI47_14220	0.65	-0.1
3,005,230	+		IAI47_14220	0.65	+2.1
3,005,230	+		IAI47_14220	0.65	+1.1
3,005,230	+		IAI47_14220	0.65	+1.0
3,005,230	+		IAI47_14220	0.65	+0.4
3,005,231	-		IAI47_14220	0.65	+0.9
3,005,231	-		IAI47_14220	0.65	-1.4
3,005,231	-		IAI47_14220	0.65	+0.3
3,005,231	-		IAI47_14220	0.65	-0.7
3,005,231	-		IAI47_14220	0.65	+0.0
3,005,231	-		IAI47_14220	0.65	-1.7
3,005,231	-		IAI47_14220	0.65	+3.2
3,005,231	-		IAI47_14220	0.65	+1.0
3,005,231	-		IAI47_14220	0.65	-1.3
3,005,231	-		IAI47_14220	0.65	+2.7
3,005,231	-		IAI47_14220	0.65	+0.3
3,005,231	-		IAI47_14220	0.65	+0.0
3,005,231	-		IAI47_14220	0.65	-0.0
3,005,231	-		IAI47_14220	0.65	+0.8
3,005,231	-		IAI47_14220	0.65	-1.2
3,005,231	-		IAI47_14220	0.65	+0.5
3,005,231	-		IAI47_14220	0.65	+2.5
3,005,231	-		IAI47_14220	0.65	-1.5
3,005,231	-		IAI47_14220	0.65	-1.6
3,005,246	-		IAI47_14220	0.66	-1.0
3,005,339	+		IAI47_14220	0.70	-0.6
3,005,340	-		IAI47_14220	0.70	-0.9
3,005,366	-		IAI47_14220	0.71	-1.6
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