Strain Fitness in Pantoea sp. MT58 around IAI47_09670

Experiment: Survival; Treatment=GW247 (pH 5.4); TreatmentDuration=0.5hrs; Outgrowth=LBkan50

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Survival; Treatment=GW247 (pH 5.4); TreatmentDuration=0.5hrs; Outgrowth=LBkan50
2,047,756	+		IAI47_09665	0.46	-0.7
2,047,828	+		IAI47_09665	0.51	+0.0
2,047,828	+		IAI47_09665	0.51	-0.5
2,047,829	-		IAI47_09665	0.52	+0.3
2,047,914	+		IAI47_09665	0.57	+0.5
2,047,914	+		IAI47_09665	0.57	+0.8
2,047,914	+		IAI47_09665	0.57	+0.9
2,047,914	+		IAI47_09665	0.57	-2.7
2,047,914	+		IAI47_09665	0.57	-1.0
2,047,915	-		IAI47_09665	0.58	+0.2
2,047,924	+		IAI47_09665	0.58	-0.1
2,047,924	+		IAI47_09665	0.58	-0.9
2,047,924	+		IAI47_09665	0.58	+0.3
2,047,925	-		IAI47_09665	0.58	+0.4
2,047,925	-		IAI47_09665	0.58	+0.8
2,047,957	+		IAI47_09665	0.60	+0.9
2,047,957	+		IAI47_09665	0.60	+0.3
2,047,957	+		IAI47_09665	0.60	+0.3
2,047,957	+		IAI47_09665	0.60	-0.1
2,047,958	-		IAI47_09665	0.61	-0.3
2,047,958	-		IAI47_09665	0.61	+1.7
2,048,006	-		IAI47_09665	0.64	-1.2
2,048,006	-		IAI47_09665	0.64	-2.1
2,048,190	+		IAI47_09665	0.77	+2.1
2,048,190	+		IAI47_09665	0.77	+1.0
2,048,191	-		IAI47_09665	0.77	-0.5
2,048,191	-		IAI47_09665	0.77	+0.1
2,048,191	-		IAI47_09665	0.77	+0.5
2,048,191	-		IAI47_09665	0.77	+1.7
2,048,191	-		IAI47_09665	0.77	-1.2
2,048,199	+		IAI47_09665	0.77	+1.0
2,048,199	+		IAI47_09665	0.77	-1.2
2,048,199	+		IAI47_09665	0.77	-2.4
2,048,200	-		IAI47_09665	0.77	-0.2
2,048,200	-		IAI47_09665	0.77	-0.1
2,048,200	-		IAI47_09665	0.77	-1.5
2,048,200	-		IAI47_09665	0.77	+0.9
2,048,497	+				+0.3
2,048,497	+				+0.4
2,048,498	-				+1.9
2,048,502	+				-2.0
2,048,503	-				-0.2
2,048,547	+				-0.4
2,048,548	-				-0.4
2,048,563	-				+1.1
2,048,563	-				+0.3
2,048,599	+				+0.4
2,048,599	+				-0.3
2,048,599	+				+0.6
2,048,599	+				-2.4
2,048,599	+				-1.3
2,048,600	-				-0.1
2,048,600	-				+0.7
2,048,600	-				-2.2
2,048,645	-				+1.4
2,048,682	-				-0.0
2,048,718	+				+1.3
2,048,718	+				+0.4
2,048,718	+				+0.6
2,048,719	-				+0.0
2,048,719	-				+0.0
2,048,751	+		IAI47_09670	0.12	+0.7
2,048,752	-		IAI47_09670	0.12	-1.0
2,048,752	-		IAI47_09670	0.12	+2.3
2,048,767	+		IAI47_09670	0.18	+0.8
2,048,767	+		IAI47_09670	0.18	-0.7
2,048,768	-		IAI47_09670	0.18	+1.5
2,048,881	+		IAI47_09670	0.60	+0.9
2,048,881	+		IAI47_09670	0.60	+0.7
2,048,881	+		IAI47_09670	0.60	-0.8
2,048,881	+		IAI47_09670	0.60	+0.0
2,048,881	+		IAI47_09670	0.60	+1.9
2,048,882	-		IAI47_09670	0.61	-0.7
2,048,882	-		IAI47_09670	0.61	+1.2
2,048,882	-		IAI47_09670	0.61	+0.8
2,048,882	-		IAI47_09670	0.61	+2.3
2,048,882	-		IAI47_09670	0.61	-2.0
2,048,894	+		IAI47_09670	0.65	-0.7
2,048,894	+		IAI47_09670	0.65	+2.9
2,048,895	-		IAI47_09670	0.66	+1.6
2,048,895	-		IAI47_09670	0.66	+2.1
2,048,895	-		IAI47_09670	0.66	-1.5
2,048,948	+		IAI47_09670	0.85	-1.5
2,048,948	+		IAI47_09670	0.85	-0.7
2,048,948	+		IAI47_09670	0.85	-1.2
2,048,948	+		IAI47_09670	0.85	+1.0
2,048,948	+		IAI47_09670	0.85	-1.0
2,048,948	+		IAI47_09670	0.85	-2.4
2,048,948	+		IAI47_09670	0.85	+0.5
2,048,948	+		IAI47_09670	0.85	+1.6
2,048,949	-		IAI47_09670	0.86	+1.3
2,048,949	-		IAI47_09670	0.86	+1.3
2,048,949	-		IAI47_09670	0.86	+1.3
2,048,950	+		IAI47_09670	0.86	-1.8
2,048,951	-		IAI47_09670	0.87	-0.2
2,048,951	-		IAI47_09670	0.87	-0.1
2,048,965	+				-0.5
2,048,965	+				-1.7
2,048,965	+				-1.7
2,048,966	-				-0.0
2,048,966	-				-1.7
2,048,971	+				-1.0
2,048,971	+				+0.6
2,048,972	-				-0.5
2,049,023	-		IAI47_09675	0.33	+1.7
2,049,041	+		IAI47_09675	0.52	-1.8
2,049,042	-		IAI47_09675	0.53	-1.2
2,049,042	-		IAI47_09675	0.53	-3.0
2,049,042	-		IAI47_09675	0.53	-1.2
2,049,088	+				+0.3
2,049,088	+				-2.2
2,049,089	-				-1.2
2,049,089	-				-1.0
2,049,130	+				+0.0
2,049,131	-				+2.1
2,049,174	-		IAI47_09680	0.13	-1.0
2,049,174	-		IAI47_09680	0.13	-2.5
2,049,174	-		IAI47_09680	0.13	-0.3
2,049,230	-		IAI47_09680	0.30	-0.7
2,049,230	-		IAI47_09680	0.30	-1.0
2,049,236	+		IAI47_09680	0.32	+0.5
2,049,236	+		IAI47_09680	0.32	+0.6
2,049,236	+		IAI47_09680	0.32	+0.3
2,049,236	+		IAI47_09680	0.32	-1.8
2,049,236	+		IAI47_09680	0.32	-0.5
2,049,236	+		IAI47_09680	0.32	-0.7
2,049,236	+		IAI47_09680	0.32	-0.2
2,049,236	+		IAI47_09680	0.32	+0.9
2,049,236	+		IAI47_09680	0.32	+0.3
2,049,237	-		IAI47_09680	0.32	+1.9
2,049,237	-		IAI47_09680	0.32	-1.2
2,049,237	-		IAI47_09680	0.32	+0.1
2,049,237	-		IAI47_09680	0.32	+0.0
2,049,237	-		IAI47_09680	0.32	+0.8
2,049,267	+		IAI47_09680	0.42	-0.2
2,049,267	+		IAI47_09680	0.42	-2.7
2,049,268	-		IAI47_09680	0.42	-0.8
2,049,328	+		IAI47_09680	0.60	-1.1
2,049,328	+		IAI47_09680	0.60	-1.5
2,049,328	+		IAI47_09680	0.60	+1.9
2,049,329	-		IAI47_09680	0.61	+1.0
2,049,329	-		IAI47_09680	0.61	-0.2
2,049,329	-		IAI47_09680	0.61	+1.3
2,049,329	-		IAI47_09680	0.61	+0.8
2,049,381	+		IAI47_09680	0.77	-0.5
2,049,381	+		IAI47_09680	0.77	+1.3
2,049,381	+		IAI47_09680	0.77	+0.0
2,049,381	+		IAI47_09680	0.77	-2.2
2,049,381	+		IAI47_09680	0.77	+0.8
2,049,382	-		IAI47_09680	0.77	+0.6
2,049,382	-		IAI47_09680	0.77	+0.3
2,049,382	-		IAI47_09680	0.77	-0.2
2,049,489	+				+0.0
2,049,489	+				+1.9
2,049,490	-				-0.5
2,049,491	+				+1.3
2,049,491	+				-0.7
2,049,491	+				-0.2
2,049,491	+				-1.7
2,049,511	+				+0.8
2,049,512	-				+4.8
2,049,512	-				+1.3
2,049,512	-				+0.3
2,049,566	+				-0.2
2,049,610	-				-0.7
2,049,612	+				-0.2
2,049,613	-				+1.3
2,049,616	+				+1.8
2,049,617	-				+0.9
2,049,617	-				-0.2
2,049,617	-				-0.0
2,049,617	-				+1.3
2,049,621	+				-1.2
2,049,643	+				-0.5
2,049,645	+				+0.6
2,049,679	-				-1.7
2,049,679	-				-0.5
2,049,719	+				+1.1
2,049,719	+				-1.1
2,049,719	+				-2.1
2,049,720	-				-0.5
2,049,720	-				-2.2
2,049,720	-				+2.8
2,049,720	-				+0.3
2,049,750	+				+1.2
2,049,750	+				-1.7
2,049,751	-				-1.1
2,049,751	-				-1.1
2,049,810	+				-1.0
2,049,810	+				-2.1
2,049,811	-				+2.2
2,049,829	+				-0.2
2,049,830	-				+0.3
2,049,838	+				-1.1
2,049,838	+				-0.2
2,049,839	-				-0.7
2,049,881	+				-0.2
2,049,892	+				-1.2
2,049,893	-				+1.1
2,049,893	-				+0.3
2,049,954	+		IAI47_09685	0.13	-1.5