Strain Fitness in Pantoea sp. MT58 around IAI47_04955

Experiment: Survival; Treatment=GW247 (pH 5.4); TreatmentDuration=0.5hrs; Outgrowth=LBkan50

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Survival; Treatment=GW247 (pH 5.4); TreatmentDuration=0.5hrs; Outgrowth=LBkan50
1,039,731	+				-0.1
1,039,731	+				-0.3
1,039,732	-				+0.2
1,039,732	-				-1.9
1,039,732	-				+0.2
1,039,732	-				+0.8
1,039,732	-				+0.9
1,039,732	-				-0.6
1,039,732	-				+0.7
1,039,732	-				-0.5
1,039,732	-				-0.5
1,039,733	+				-1.8
1,039,733	+				+1.8
1,039,733	+				-1.0
1,039,733	+				+1.1
1,039,733	+				-0.7
1,039,733	+				-0.7
1,039,733	+				-0.7
1,039,734	-				-0.6
1,039,779	+				+0.0
1,039,780	-				-1.7
1,039,780	-				+2.1
1,039,796	+				+0.0
1,039,796	+				+3.1
1,039,797	-				+0.6
1,039,797	-				-0.9
1,039,797	-				+1.2
1,039,799	+				-0.1
1,039,799	+				+0.0
1,039,849	+				+0.4
1,039,850	-				-1.6
1,039,850	-				+1.9
1,039,850	-				+2.9
1,039,917	+				+0.4
1,039,917	+				+0.1
1,039,918	-				-0.4
1,039,918	-				+0.1
1,039,918	-				+0.3
1,039,918	-				-2.6
1,039,918	-				-2.2
1,039,918	-				+0.2
1,039,918	-				+0.6
1,039,918	-				-1.3
1,039,918	-				+1.7
1,039,919	+				-0.9
1,039,919	+				-1.2
1,039,926	+				-2.6
1,039,926	+				-1.7
1,039,926	+				-2.5
1,039,927	-				-0.4
1,039,986	+				-0.6
1,039,987	-				+0.2
1,040,063	+		IAI47_04950	0.29	-2.3
1,040,063	+		IAI47_04950	0.29	-0.1
1,040,063	+		IAI47_04950	0.29	+0.6
1,040,063	+		IAI47_04950	0.29	-0.1
1,040,064	-		IAI47_04950	0.29	+1.0
1,040,102	-		IAI47_04950	0.40	-0.7
1,040,102	-		IAI47_04950	0.40	-1.0
1,040,116	+		IAI47_04950	0.44	-0.9
1,040,116	+		IAI47_04950	0.44	+1.0
1,040,116	+		IAI47_04950	0.44	+0.0
1,040,116	+		IAI47_04950	0.44	-2.4
1,040,116	+		IAI47_04950	0.44	-2.4
1,040,116	+		IAI47_04950	0.44	-3.5
1,040,116	+		IAI47_04950	0.44	-1.0
1,040,116	+		IAI47_04950	0.44	+0.0
1,040,117	-		IAI47_04950	0.45	+0.4
1,040,117	-		IAI47_04950	0.45	-0.2
1,040,117	-		IAI47_04950	0.45	-0.2
1,040,117	-		IAI47_04950	0.45	-1.7
1,040,117	-		IAI47_04950	0.45	-1.7
1,040,117	-		IAI47_04950	0.45	-1.7
1,040,117	-		IAI47_04950	0.45	-1.2
1,040,117	-		IAI47_04950	0.45	-1.0
1,040,117	-		IAI47_04950	0.45	-0.1
1,040,117	-		IAI47_04950	0.45	+0.5
1,040,117	-		IAI47_04950	0.45	-0.5
1,040,117	-		IAI47_04950	0.45	-0.2
1,040,117	-		IAI47_04950	0.45	-1.1
1,040,118	+		IAI47_04950	0.45	-1.2
1,040,118	+		IAI47_04950	0.45	-0.4
1,040,118	+		IAI47_04950	0.45	-1.0
1,040,118	+		IAI47_04950	0.45	-1.6
1,040,118	+		IAI47_04950	0.45	+0.6
1,040,118	+		IAI47_04950	0.45	+2.6
1,040,118	+		IAI47_04950	0.45	-1.6
1,040,119	-		IAI47_04950	0.45	-0.4
1,040,119	-		IAI47_04950	0.45	+1.2
1,040,119	-		IAI47_04950	0.45	+0.2
1,040,119	-		IAI47_04950	0.45	-0.2
1,040,119	-		IAI47_04950	0.45	+0.6
1,040,132	+		IAI47_04950	0.49	-1.7
1,040,133	-		IAI47_04950	0.49	-0.4
1,040,136	+		IAI47_04950	0.50	-0.7
1,040,136	+		IAI47_04950	0.50	+0.1
1,040,136	+		IAI47_04950	0.50	-1.1
1,040,137	-		IAI47_04950	0.50	-2.9
1,040,137	-		IAI47_04950	0.50	-1.6
1,040,137	-		IAI47_04950	0.50	+1.0
1,040,137	-		IAI47_04950	0.50	-0.7
1,040,170	-		IAI47_04950	0.60	-0.4
1,040,170	-		IAI47_04950	0.60	+0.8
1,040,178	+		IAI47_04950	0.63	-1.4
1,040,178	+		IAI47_04950	0.63	-2.1
1,040,179	-		IAI47_04950	0.63	-0.7
1,040,179	-		IAI47_04950	0.63	+2.1
1,040,196	+		IAI47_04950	0.68	+0.4
1,040,197	-		IAI47_04950	0.68	+1.6
1,040,274	+				+0.7
1,040,314	+				-1.3
1,040,315	-				+0.1
1,040,325	-				-0.8
1,040,325	-				+0.6
1,040,331	+				+1.6
1,040,333	+				-1.2
1,040,334	-				-1.8
1,040,334	-				+1.2
1,040,334	-				-1.8
1,040,334	-				-0.7
1,040,361	-				+2.1
1,040,384	+				+0.2
1,040,384	+				-1.7
1,040,385	-				+1.2
1,040,385	-				+0.7
1,040,385	-				-1.8
1,040,472	-				+2.0
1,040,472	-				+2.6
1,040,546	+				-0.4
1,040,549	+				-0.3
1,040,549	+				+1.9
1,040,549	+				+0.5
1,040,549	+				+0.4
1,040,699	+				-2.1
1,040,699	+				+0.9
1,040,699	+				+0.2
1,040,699	+				+0.6
1,040,700	-				+1.0
1,040,700	-				-1.0
1,040,700	-				+0.6
1,040,700	-				+0.0
1,040,702	+				-1.2
1,040,703	-				-1.2
1,040,711	+				+2.4
1,040,711	+				-0.4
1,040,711	+				+0.7
1,040,712	-				-0.2
1,040,712	-				+1.1
1,040,712	-				+0.3
1,040,712	-				-0.5
1,040,712	-				+0.9
1,040,712	-				-1.1
1,040,741	+				+0.3
1,040,742	-				-0.4
1,040,799	+				-0.7
1,040,799	+				+1.1
1,040,800	-				-0.3
1,040,800	-				+1.6
1,040,800	-				+0.4
1,040,800	-				+1.9
1,040,806	+				-0.3
1,040,822	+				-0.1
1,040,822	+				-0.6
1,040,822	+				-2.1
1,040,822	+				+1.6
1,040,823	-				+0.2
1,040,823	-				-0.6
1,040,823	-				+0.3
1,040,823	-				-0.4
1,040,823	-				-0.2
1,040,823	-				-0.7
1,040,823	-				-1.5
1,040,823	-				-0.5
1,040,868	+		IAI47_04955	0.13	-0.2
1,040,868	+		IAI47_04955	0.13	-0.8
1,040,869	-		IAI47_04955	0.13	+1.2
1,040,891	+		IAI47_04955	0.15	-0.8
1,040,891	+		IAI47_04955	0.15	-1.5
1,041,240	+		IAI47_04955	0.45	-1.5
1,041,240	+		IAI47_04955	0.45	+3.9
1,041,240	+		IAI47_04955	0.45	-0.3
1,041,240	+		IAI47_04955	0.45	+0.7
1,041,241	-		IAI47_04955	0.45	+1.9
1,041,241	-		IAI47_04955	0.45	-0.8
1,041,241	-		IAI47_04955	0.45	-1.2
1,041,241	-		IAI47_04955	0.45	+0.4
1,041,245	+		IAI47_04955	0.45	+0.3
1,041,252	+		IAI47_04955	0.46	+1.1
1,041,253	-		IAI47_04955	0.46	-0.4
1,041,253	-		IAI47_04955	0.46	-0.6
1,041,253	-		IAI47_04955	0.46	-2.1
1,041,278	+		IAI47_04955	0.48	+0.5
1,041,278	+		IAI47_04955	0.48	+1.1
1,041,279	-		IAI47_04955	0.48	-0.7
1,041,279	-		IAI47_04955	0.48	-1.0
1,041,322	+		IAI47_04955	0.52	+2.1
1,041,323	-		IAI47_04955	0.52	+0.4
1,041,323	-		IAI47_04955	0.52	+0.0
1,041,323	-		IAI47_04955	0.52	+0.9
1,041,323	-		IAI47_04955	0.52	-0.6
1,041,323	-		IAI47_04955	0.52	-1.7
1,041,323	-		IAI47_04955	0.52	+0.0
1,041,384	+		IAI47_04955	0.57	+0.6
1,041,385	-		IAI47_04955	0.57	+0.6
1,041,385	-		IAI47_04955	0.57	-1.5
1,041,385	-		IAI47_04955	0.57	+2.7
1,041,385	-		IAI47_04955	0.57	-0.4
1,041,393	+		IAI47_04955	0.58	+0.2
1,041,393	+		IAI47_04955	0.58	-1.0
1,041,393	+		IAI47_04955	0.58	+0.9
1,041,393	+		IAI47_04955	0.58	-0.3
1,041,393	+		IAI47_04955	0.58	-1.1
1,041,394	-		IAI47_04955	0.58	-2.2
1,041,477	+		IAI47_04955	0.65	+0.9
1,041,478	-		IAI47_04955	0.65	-0.1
1,041,478	-		IAI47_04955	0.65	+1.3
1,041,479	+		IAI47_04955	0.65	+1.6
1,041,479	+		IAI47_04955	0.65	-0.2
1,041,479	+		IAI47_04955	0.65	-2.3
1,041,479	+		IAI47_04955	0.65	+1.2
1,041,479	+		IAI47_04955	0.65	+0.4
1,041,479	+		IAI47_04955	0.65	+0.3
1,041,480	-		IAI47_04955	0.65	-0.2
1,041,480	-		IAI47_04955	0.65	+1.7
1,041,480	-		IAI47_04955	0.65	+1.1
1,041,480	-		IAI47_04955	0.65	-0.4
1,041,480	-		IAI47_04955	0.65	+0.5
1,041,480	-		IAI47_04955	0.65	+2.3
1,041,480	-		IAI47_04955	0.65	-0.9
1,041,524	+		IAI47_04955	0.69	+0.2
1,041,524	+		IAI47_04955	0.69	-1.4
1,041,525	-		IAI47_04955	0.69	+1.4
1,041,525	-		IAI47_04955	0.69	-0.4
1,041,611	+		IAI47_04955	0.76	-1.7
1,041,611	+		IAI47_04955	0.76	+1.2
1,041,612	-		IAI47_04955	0.76	+0.0
1,041,627	+		IAI47_04955	0.77	-1.2
1,041,628	-		IAI47_04955	0.77	-0.3
1,041,704	+		IAI47_04955	0.84	-2.1
1,041,705	-		IAI47_04955	0.84	+0.5
1,041,714	+		IAI47_04955	0.85	-1.1
1,041,715	-		IAI47_04955	0.85	-0.1
1,041,715	-		IAI47_04955	0.85	-1.1
1,041,715	-		IAI47_04955	0.85	-3.3
1,041,756	+		IAI47_04955	0.88	+0.8
1,041,756	+		IAI47_04955	0.88	-0.1
1,041,756	+		IAI47_04955	0.88	+0.3
1,041,756	+		IAI47_04955	0.88	+0.9
1,041,757	-		IAI47_04955	0.88	+0.8
1,041,757	-		IAI47_04955	0.88	-1.4
1,041,762	+		IAI47_04955	0.89	+2.8
1,041,762	+		IAI47_04955	0.89	+0.3
1,041,762	+		IAI47_04955	0.89	+3.1
1,041,762	+		IAI47_04955	0.89	+1.4
1,041,762	+		IAI47_04955	0.89	+3.0
1,041,762	+		IAI47_04955	0.89	+1.6
1,041,762	+		IAI47_04955	0.89	+0.6
1,041,763	-		IAI47_04955	0.89	+1.6
1,041,763	-		IAI47_04955	0.89	-0.4
1,041,763	-		IAI47_04955	0.89	+2.0
1,041,763	-		IAI47_04955	0.89	+1.0
1,041,763	-		IAI47_04955	0.89	+0.0
1,041,801	+				-1.7
1,041,801	+				-0.7
1,041,801	+				+1.2
1,041,801	+				+0.6
1,041,801	+				-0.1
1,041,802	-				-2.6
1,041,802	-				-0.1
1,041,802	-				+0.7
1,041,802	-				+0.5
1,041,802	-				+0.7
1,041,809	+				-0.4
1,041,809	+				+1.2
1,041,809	+				-0.6
1,041,809	+				-2.3
1,041,809	+				+1.1
1,041,810	-				-1.4
1,041,810	-				+0.6
1,041,810	-				-0.4
1,041,810	-				-1.9
1,041,810	-				+0.7
1,041,810	-				+0.7
1,041,822	+				-0.8
1,041,845	-				+1.0
1,041,865	-				+0.0
1,041,894	+				-0.4
1,041,894	+				+0.2
1,041,894	+				-1.1
1,041,894	+				+0.6
1,041,894	+				+0.3
1,041,894	+				+0.1
1,041,895	-				-1.4
1,041,895	-				-0.5
1,041,895	-				+0.0
1,041,895	-				-0.2
1,041,895	-				+1.9
1,041,895	-				+1.5
1,041,895	-				+0.2
1,041,908	+				+0.5
1,041,911	+				-0.6
1,041,911	+				-1.1
1,041,911	+				-1.8
1,041,919	+				-0.7
1,041,919	+				+0.7
1,041,920	-				-1.0
1,041,920	-				+2.0
1,041,935	+				+0.0
1,041,936	-				-1.7
1,041,938	-				-0.3
1,041,938	-				+1.9
1,041,957	+				+0.3
1,041,957	+				-1.9
1,041,958	-				+0.9
1,041,958	-				+0.1
1,042,061	+				+1.5
1,042,072	-				+0.4
1,042,128	+				+1.1
1,042,128	+				-0.7
1,042,129	-				-0.2
1,042,129	-				-0.9
1,042,129	-				+0.5
1,042,129	-				+1.6
1,042,151	+				-1.4