Strain Fitness in Sphingomonas koreensis DSMZ 15582 around Ga0059261_4213

Experiment: Cephalothin 0.3 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGa0059261_4212 and Ga0059261_4213 overlap by 28 nucleotidesGa0059261_4213 and Ga0059261_4214 are separated by 184 nucleotidesGa0059261_4214 and Ga0059261_4215 overlap by 4 nucleotides Ga0059261_4212: Ga0059261_4212 - TPR repeat, at 4,366,393 to 4,367,955 _4212 Ga0059261_4213: Ga0059261_4213 - 4-diphosphocytidyl-2-C-methyl-D-erythritol kinase (EC 2.7.1.148), at 4,367,928 to 4,368,779 _4213 Ga0059261_4214: Ga0059261_4214 - Enoyl-CoA hydratase/carnithine racemase, at 4,368,964 to 4,369,692 _4214 Ga0059261_4215: Ga0059261_4215 - Predicted N-formylglutamate amidohydrolase, at 4,369,689 to 4,370,420 _4215 Position (kb) 4367 4368 4369Strain fitness (log2 ratio) -2 -1 0 1at 4366.962 kb on + strand, within Ga0059261_4212at 4366.962 kb on + strand, within Ga0059261_4212at 4367.218 kb on + strand, within Ga0059261_4212at 4367.269 kb on + strand, within Ga0059261_4212at 4367.269 kb on + strand, within Ga0059261_4212at 4367.392 kb on + strand, within Ga0059261_4212at 4367.599 kb on + strand, within Ga0059261_4212at 4367.599 kb on + strandat 4367.608 kb on + strand, within Ga0059261_4212at 4367.608 kb on + strand, within Ga0059261_4212at 4367.608 kb on + strand, within Ga0059261_4212at 4367.608 kb on + strand, within Ga0059261_4212at 4367.719 kb on + strand, within Ga0059261_4212at 4367.736 kb on + strand, within Ga0059261_4212at 4367.821 kb on + strandat 4367.821 kb on + strandat 4367.821 kb on + strandat 4367.854 kb on + strandat 4367.854 kb on + strandat 4367.878 kb on + strandat 4368.812 kb on + strandat 4368.812 kb on + strandat 4368.813 kb on - strandat 4368.815 kb on - strandat 4368.865 kb on - strandat 4368.865 kb on - strandat 4369.007 kb on + strandat 4369.007 kb on + strandat 4369.008 kb on - strandat 4369.008 kb on - strandat 4369.008 kb on - strandat 4369.008 kb on - strandat 4369.293 kb on - strand, within Ga0059261_4214at 4369.375 kb on + strand, within Ga0059261_4214at 4369.375 kb on + strand, within Ga0059261_4214at 4369.622 kb on + strandat 4369.622 kb on + strandat 4369.622 kb on + strandat 4369.622 kb on + strandat 4369.623 kb on - strandat 4369.683 kb on + strandat 4369.683 kb on + strandat 4369.706 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Cephalothin 0.3 mg/ml
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4,366,962 + Ga0059261_4212 0.36 -0.4
4,366,962 + Ga0059261_4212 0.36 -1.6
4,367,218 + Ga0059261_4212 0.53 -1.1
4,367,269 + Ga0059261_4212 0.56 -1.7
4,367,269 + Ga0059261_4212 0.56 +0.3
4,367,392 + Ga0059261_4212 0.64 -2.2
4,367,599 + Ga0059261_4212 0.77 -2.4
4,367,599 + -0.5
4,367,608 + Ga0059261_4212 0.78 +0.7
4,367,608 + Ga0059261_4212 0.78 +0.1
4,367,608 + Ga0059261_4212 0.78 -2.7
4,367,608 + Ga0059261_4212 0.78 -0.5
4,367,719 + Ga0059261_4212 0.85 -1.6
4,367,736 + Ga0059261_4212 0.86 +0.7
4,367,821 + -0.4
4,367,821 + -1.2
4,367,821 + -1.5
4,367,854 + +0.2
4,367,854 + -0.4
4,367,878 + -0.6
4,368,812 + +0.1
4,368,812 + -0.3
4,368,813 - +0.7
4,368,815 - -0.2
4,368,865 - +0.7
4,368,865 - -0.5
4,369,007 + -1.2
4,369,007 + -0.2
4,369,008 - +0.1
4,369,008 - -0.0
4,369,008 - -0.2
4,369,008 - +1.5
4,369,293 - Ga0059261_4214 0.45 +0.3
4,369,375 + Ga0059261_4214 0.56 -0.7
4,369,375 + Ga0059261_4214 0.56 -0.4
4,369,622 + -0.0
4,369,622 + -0.5
4,369,622 + -0.4
4,369,622 + +0.1
4,369,623 - +0.1
4,369,683 + +0.2
4,369,683 + -0.1
4,369,706 + +0.2

Or see this region's nucleotide sequence