Strain Fitness in Sphingomonas koreensis DSMZ 15582 around Ga0059261_4005

Experiment: Cephalothin 0.3 mg/ml

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntGa0059261_4003 and Ga0059261_4004 are separated by 11 nucleotidesGa0059261_4004 and Ga0059261_4005 overlap by 53 nucleotidesGa0059261_4005 and Ga0059261_4006 are separated by 76 nucleotides Ga0059261_4003: Ga0059261_4003 - aspartate-semialdehyde dehydrogenase (peptidoglycan organisms), at 4,118,165 to 4,119,190 _4003 Ga0059261_4004: Ga0059261_4004 - Predicted membrane protein, at 4,119,202 to 4,119,846 _4004 Ga0059261_4005: Ga0059261_4005 - drug resistance transporter, EmrB/QacA subfamily, at 4,119,794 to 4,121,305 _4005 Ga0059261_4006: Ga0059261_4006 - Multidrug resistance efflux pump, at 4,121,382 to 4,122,443 _4006 Position (kb) 4119 4120 4121 4122Strain fitness (log2 ratio) -2 -1 0 1at 4119.280 kb on + strand, within Ga0059261_4004at 4119.280 kb on + strand, within Ga0059261_4004at 4119.280 kb on + strand, within Ga0059261_4004at 4119.280 kb on + strand, within Ga0059261_4004at 4119.281 kb on - strand, within Ga0059261_4004at 4119.291 kb on + strand, within Ga0059261_4004at 4119.291 kb on + strand, within Ga0059261_4004at 4119.291 kb on + strand, within Ga0059261_4004at 4119.291 kb on + strand, within Ga0059261_4004at 4119.292 kb on - strand, within Ga0059261_4004at 4119.430 kb on + strand, within Ga0059261_4004at 4119.430 kb on + strand, within Ga0059261_4004at 4119.430 kb on + strand, within Ga0059261_4004at 4119.430 kb on + strand, within Ga0059261_4004at 4119.430 kb on + strand, within Ga0059261_4004at 4119.430 kb on + strand, within Ga0059261_4004at 4119.430 kb on + strand, within Ga0059261_4004at 4119.430 kb on + strand, within Ga0059261_4004at 4119.431 kb on - strand, within Ga0059261_4004at 4119.431 kb on - strand, within Ga0059261_4004at 4119.431 kb on - strand, within Ga0059261_4004at 4119.431 kb on - strand, within Ga0059261_4004at 4119.431 kb on - strand, within Ga0059261_4004at 4119.431 kb on - strand, within Ga0059261_4004at 4119.431 kb on - strand, within Ga0059261_4004at 4119.431 kb on - strand, within Ga0059261_4004at 4119.431 kb on - strand, within Ga0059261_4004at 4119.431 kb on - strand, within Ga0059261_4004at 4119.431 kb on - strand, within Ga0059261_4004at 4119.431 kb on - strand, within Ga0059261_4004at 4119.431 kb on - strand, within Ga0059261_4004at 4119.432 kb on + strand, within Ga0059261_4004at 4119.432 kb on + strand, within Ga0059261_4004at 4119.432 kb on + strand, within Ga0059261_4004at 4119.433 kb on - strand, within Ga0059261_4004at 4119.433 kb on - strand, within Ga0059261_4004at 4119.433 kb on - strand, within Ga0059261_4004at 4119.433 kb on - strand, within Ga0059261_4004at 4119.433 kb on - strand, within Ga0059261_4004at 4119.433 kb on - strandat 4119.445 kb on + strand, within Ga0059261_4004at 4119.445 kb on + strand, within Ga0059261_4004at 4119.445 kb on + strand, within Ga0059261_4004at 4119.446 kb on - strand, within Ga0059261_4004at 4119.583 kb on + strand, within Ga0059261_4004at 4119.583 kb on + strand, within Ga0059261_4004at 4119.583 kb on + strand, within Ga0059261_4004at 4119.584 kb on - strand, within Ga0059261_4004at 4119.584 kb on - strand, within Ga0059261_4004at 4119.584 kb on - strand, within Ga0059261_4004at 4119.584 kb on - strand, within Ga0059261_4004at 4119.652 kb on + strand, within Ga0059261_4004at 4119.653 kb on - strand, within Ga0059261_4004at 4119.653 kb on - strand, within Ga0059261_4004at 4119.653 kb on - strand, within Ga0059261_4004at 4119.653 kb on - strand, within Ga0059261_4004at 4119.709 kb on + strand, within Ga0059261_4004at 4119.709 kb on + strand, within Ga0059261_4004at 4119.709 kb on + strand, within Ga0059261_4004at 4119.709 kb on + strand, within Ga0059261_4004at 4119.709 kb on + strand, within Ga0059261_4004at 4119.709 kb on + strand, within Ga0059261_4004at 4119.709 kb on + strand, within Ga0059261_4004at 4119.709 kb on + strand, within Ga0059261_4004at 4119.710 kb on - strand, within Ga0059261_4004at 4119.711 kb on + strand, within Ga0059261_4004at 4119.712 kb on - strand, within Ga0059261_4004at 4119.712 kb on - strand, within Ga0059261_4004at 4119.712 kb on - strand, within Ga0059261_4004at 4119.712 kb on - strand, within Ga0059261_4004at 4119.712 kb on - strand, within Ga0059261_4004at 4119.712 kb on - strand, within Ga0059261_4004at 4119.909 kb on + strandat 4119.909 kb on + strandat 4119.910 kb on - strandat 4119.910 kb on - strandat 4119.910 kb on - strandat 4119.964 kb on + strand, within Ga0059261_4005at 4119.965 kb on - strand, within Ga0059261_4005at 4120.133 kb on + strand, within Ga0059261_4005at 4120.133 kb on + strand, within Ga0059261_4005at 4120.133 kb on + strand, within Ga0059261_4005at 4120.134 kb on - strand, within Ga0059261_4005at 4120.134 kb on - strand, within Ga0059261_4005at 4120.134 kb on - strand, within Ga0059261_4005at 4120.287 kb on + strand, within Ga0059261_4005at 4120.287 kb on + strand, within Ga0059261_4005at 4120.287 kb on + strand, within Ga0059261_4005at 4120.288 kb on - strandat 4120.288 kb on - strand, within Ga0059261_4005at 4120.440 kb on + strand, within Ga0059261_4005at 4120.440 kb on + strand, within Ga0059261_4005at 4120.440 kb on + strand, within Ga0059261_4005at 4120.440 kb on + strand, within Ga0059261_4005at 4120.440 kb on + strandat 4120.441 kb on - strandat 4120.815 kb on + strand, within Ga0059261_4005at 4120.815 kb on + strand, within Ga0059261_4005at 4120.815 kb on + strand, within Ga0059261_4005at 4120.815 kb on + strand, within Ga0059261_4005at 4120.816 kb on - strand, within Ga0059261_4005at 4120.816 kb on - strand, within Ga0059261_4005at 4120.816 kb on - strand, within Ga0059261_4005at 4120.816 kb on - strand, within Ga0059261_4005at 4120.851 kb on + strand, within Ga0059261_4005at 4120.852 kb on - strand, within Ga0059261_4005at 4120.904 kb on + strand, within Ga0059261_4005at 4120.905 kb on - strand, within Ga0059261_4005at 4121.155 kb on + strandat 4121.155 kb on + strandat 4121.155 kb on + strandat 4121.156 kb on - strandat 4121.156 kb on - strandat 4121.156 kb on - strandat 4121.156 kb on - strandat 4121.157 kb on + strandat 4121.157 kb on + strandat 4121.157 kb on + strandat 4121.157 kb on + strandat 4121.157 kb on + strandat 4121.157 kb on + strandat 4121.157 kb on + strandat 4121.157 kb on + strandat 4121.158 kb on - strandat 4121.158 kb on - strandat 4121.158 kb on - strandat 4121.158 kb on - strandat 4121.158 kb on - strandat 4121.158 kb on - strandat 4121.158 kb on - strandat 4121.158 kb on - strandat 4121.158 kb on - strandat 4121.158 kb on - strandat 4121.158 kb on - strandat 4121.168 kb on + strandat 4121.383 kb on + strandat 4121.383 kb on + strandat 4121.383 kb on + strandat 4121.383 kb on + strandat 4121.383 kb on + strandat 4121.384 kb on - strandat 4121.588 kb on - strand, within Ga0059261_4006at 4121.771 kb on - strand, within Ga0059261_4006at 4121.911 kb on + strand, within Ga0059261_4006at 4121.912 kb on - strand, within Ga0059261_4006at 4121.953 kb on + strand, within Ga0059261_4006at 4122.004 kb on + strand, within Ga0059261_4006at 4122.004 kb on + strand, within Ga0059261_4006at 4122.004 kb on + strand, within Ga0059261_4006at 4122.004 kb on + strand, within Ga0059261_4006at 4122.005 kb on - strand, within Ga0059261_4006at 4122.005 kb on - strandat 4122.005 kb on - strand, within Ga0059261_4006at 4122.005 kb on - strand, within Ga0059261_4006at 4122.005 kb on - strand, within Ga0059261_4006at 4122.067 kb on + strand, within Ga0059261_4006at 4122.067 kb on + strand, within Ga0059261_4006at 4122.067 kb on + strand, within Ga0059261_4006at 4122.067 kb on + strand, within Ga0059261_4006at 4122.067 kb on + strand, within Ga0059261_4006at 4122.067 kb on + strand, within Ga0059261_4006at 4122.068 kb on - strand, within Ga0059261_4006at 4122.068 kb on - strand, within Ga0059261_4006at 4122.068 kb on - strand, within Ga0059261_4006at 4122.068 kb on - strand, within Ga0059261_4006at 4122.068 kb on - strand, within Ga0059261_4006at 4122.142 kb on + strand, within Ga0059261_4006at 4122.218 kb on + strand, within Ga0059261_4006at 4122.218 kb on + strand, within Ga0059261_4006at 4122.219 kb on - strand, within Ga0059261_4006at 4122.265 kb on + strand, within Ga0059261_4006at 4122.265 kb on + strand, within Ga0059261_4006at 4122.265 kb on + strand, within Ga0059261_4006at 4122.265 kb on + strand, within Ga0059261_4006at 4122.265 kb on + strand, within Ga0059261_4006at 4122.266 kb on - strand, within Ga0059261_4006at 4122.266 kb on - strand, within Ga0059261_4006at 4122.266 kb on - strand, within Ga0059261_4006

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction Cephalothin 0.3 mg/ml
remove
4,119,280 + Ga0059261_4004 0.12 +0.0
4,119,280 + Ga0059261_4004 0.12 +0.4
4,119,280 + Ga0059261_4004 0.12 -0.3
4,119,280 + Ga0059261_4004 0.12 +0.3
4,119,281 - Ga0059261_4004 0.12 -0.5
4,119,291 + Ga0059261_4004 0.14 -2.5
4,119,291 + Ga0059261_4004 0.14 -2.1
4,119,291 + Ga0059261_4004 0.14 -0.0
4,119,291 + Ga0059261_4004 0.14 -0.4
4,119,292 - Ga0059261_4004 0.14 +0.7
4,119,430 + Ga0059261_4004 0.35 +0.1
4,119,430 + Ga0059261_4004 0.35 -0.6
4,119,430 + Ga0059261_4004 0.35 -0.1
4,119,430 + Ga0059261_4004 0.35 +0.1
4,119,430 + Ga0059261_4004 0.35 +0.9
4,119,430 + Ga0059261_4004 0.35 +0.1
4,119,430 + Ga0059261_4004 0.35 -0.5
4,119,430 + Ga0059261_4004 0.35 -0.1
4,119,431 - Ga0059261_4004 0.36 +0.2
4,119,431 - Ga0059261_4004 0.36 +0.7
4,119,431 - Ga0059261_4004 0.36 -1.7
4,119,431 - Ga0059261_4004 0.36 +0.1
4,119,431 - Ga0059261_4004 0.36 +0.1
4,119,431 - Ga0059261_4004 0.36 -0.1
4,119,431 - Ga0059261_4004 0.36 -0.2
4,119,431 - Ga0059261_4004 0.36 +0.2
4,119,431 - Ga0059261_4004 0.36 -0.3
4,119,431 - Ga0059261_4004 0.36 +0.8
4,119,431 - Ga0059261_4004 0.36 -1.0
4,119,431 - Ga0059261_4004 0.36 -0.4
4,119,431 - Ga0059261_4004 0.36 -1.1
4,119,432 + Ga0059261_4004 0.36 +0.1
4,119,432 + Ga0059261_4004 0.36 -0.2
4,119,432 + Ga0059261_4004 0.36 +0.1
4,119,433 - Ga0059261_4004 0.36 -0.7
4,119,433 - Ga0059261_4004 0.36 -0.1
4,119,433 - Ga0059261_4004 0.36 +0.8
4,119,433 - Ga0059261_4004 0.36 +0.1
4,119,433 - Ga0059261_4004 0.36 +0.7
4,119,433 - -0.2
4,119,445 + Ga0059261_4004 0.38 -0.8
4,119,445 + Ga0059261_4004 0.38 +0.8
4,119,445 + Ga0059261_4004 0.38 -0.7
4,119,446 - Ga0059261_4004 0.38 +0.8
4,119,583 + Ga0059261_4004 0.59 -0.1
4,119,583 + Ga0059261_4004 0.59 -0.2
4,119,583 + Ga0059261_4004 0.59 +0.2
4,119,584 - Ga0059261_4004 0.59 -1.4
4,119,584 - Ga0059261_4004 0.59 -0.5
4,119,584 - Ga0059261_4004 0.59 +0.8
4,119,584 - Ga0059261_4004 0.59 -0.8
4,119,652 + Ga0059261_4004 0.70 -0.2
4,119,653 - Ga0059261_4004 0.70 -0.1
4,119,653 - Ga0059261_4004 0.70 -0.5
4,119,653 - Ga0059261_4004 0.70 -0.3
4,119,653 - Ga0059261_4004 0.70 -0.2
4,119,709 + Ga0059261_4004 0.79 +0.9
4,119,709 + Ga0059261_4004 0.79 +1.3
4,119,709 + Ga0059261_4004 0.79 +0.3
4,119,709 + Ga0059261_4004 0.79 -0.8
4,119,709 + Ga0059261_4004 0.79 -0.4
4,119,709 + Ga0059261_4004 0.79 -0.8
4,119,709 + Ga0059261_4004 0.79 +0.2
4,119,709 + Ga0059261_4004 0.79 +0.8
4,119,710 - Ga0059261_4004 0.79 -0.3
4,119,711 + Ga0059261_4004 0.79 +1.0
4,119,712 - Ga0059261_4004 0.79 -0.1
4,119,712 - Ga0059261_4004 0.79 -0.5
4,119,712 - Ga0059261_4004 0.79 -0.3
4,119,712 - Ga0059261_4004 0.79 -0.1
4,119,712 - Ga0059261_4004 0.79 -0.6
4,119,712 - Ga0059261_4004 0.79 -0.4
4,119,909 + -0.1
4,119,909 + -0.2
4,119,910 - -0.2
4,119,910 - -0.1
4,119,910 - -0.8
4,119,964 + Ga0059261_4005 0.11 -0.5
4,119,965 - Ga0059261_4005 0.11 +0.2
4,120,133 + Ga0059261_4005 0.22 -1.0
4,120,133 + Ga0059261_4005 0.22 -0.3
4,120,133 + Ga0059261_4005 0.22 -1.4
4,120,134 - Ga0059261_4005 0.22 +0.1
4,120,134 - Ga0059261_4005 0.22 +0.3
4,120,134 - Ga0059261_4005 0.22 -0.7
4,120,287 + Ga0059261_4005 0.33 -1.2
4,120,287 + Ga0059261_4005 0.33 +0.7
4,120,287 + Ga0059261_4005 0.33 +0.5
4,120,288 - +0.1
4,120,288 - Ga0059261_4005 0.33 -0.5
4,120,440 + Ga0059261_4005 0.43 -0.8
4,120,440 + Ga0059261_4005 0.43 +0.1
4,120,440 + Ga0059261_4005 0.43 -0.5
4,120,440 + Ga0059261_4005 0.43 +0.2
4,120,440 + +1.1
4,120,441 - +0.1
4,120,815 + Ga0059261_4005 0.68 +0.6
4,120,815 + Ga0059261_4005 0.68 +0.5
4,120,815 + Ga0059261_4005 0.68 -0.9
4,120,815 + Ga0059261_4005 0.68 -0.4
4,120,816 - Ga0059261_4005 0.68 +0.3
4,120,816 - Ga0059261_4005 0.68 -0.1
4,120,816 - Ga0059261_4005 0.68 +0.5
4,120,816 - Ga0059261_4005 0.68 +0.5
4,120,851 + Ga0059261_4005 0.70 -0.6
4,120,852 - Ga0059261_4005 0.70 +0.5
4,120,904 + Ga0059261_4005 0.73 +0.2
4,120,905 - Ga0059261_4005 0.73 +0.1
4,121,155 + -0.5
4,121,155 + -0.8
4,121,155 + -0.3
4,121,156 - -0.5
4,121,156 - +0.1
4,121,156 - -0.5
4,121,156 - +0.3
4,121,157 + -0.7
4,121,157 + +0.1
4,121,157 + -0.4
4,121,157 + +1.1
4,121,157 + +0.3
4,121,157 + +1.4
4,121,157 + +0.1
4,121,157 + +0.2
4,121,158 - -0.3
4,121,158 - +0.1
4,121,158 - -1.1
4,121,158 - -1.0
4,121,158 - +0.2
4,121,158 - -0.4
4,121,158 - -0.4
4,121,158 - -0.2
4,121,158 - -0.0
4,121,158 - +0.6
4,121,158 - -0.1
4,121,168 + -0.3
4,121,383 + -0.4
4,121,383 + -0.2
4,121,383 + -0.8
4,121,383 + -0.4
4,121,383 + +0.4
4,121,384 - -0.0
4,121,588 - Ga0059261_4006 0.19 -0.9
4,121,771 - Ga0059261_4006 0.37 -0.4
4,121,911 + Ga0059261_4006 0.50 -0.3
4,121,912 - Ga0059261_4006 0.50 -0.5
4,121,953 + Ga0059261_4006 0.54 -0.3
4,122,004 + Ga0059261_4006 0.59 +0.1
4,122,004 + Ga0059261_4006 0.59 -0.1
4,122,004 + Ga0059261_4006 0.59 -0.3
4,122,004 + Ga0059261_4006 0.59 +0.3
4,122,005 - Ga0059261_4006 0.59 +1.7
4,122,005 - +0.1
4,122,005 - Ga0059261_4006 0.59 -1.0
4,122,005 - Ga0059261_4006 0.59 -0.7
4,122,005 - Ga0059261_4006 0.59 +0.1
4,122,067 + Ga0059261_4006 0.65 +0.1
4,122,067 + Ga0059261_4006 0.65 -1.0
4,122,067 + Ga0059261_4006 0.65 -0.4
4,122,067 + Ga0059261_4006 0.65 -0.8
4,122,067 + Ga0059261_4006 0.65 -0.1
4,122,067 + Ga0059261_4006 0.65 +0.3
4,122,068 - Ga0059261_4006 0.65 +0.9
4,122,068 - Ga0059261_4006 0.65 -0.6
4,122,068 - Ga0059261_4006 0.65 +0.9
4,122,068 - Ga0059261_4006 0.65 +0.1
4,122,068 - Ga0059261_4006 0.65 -0.4
4,122,142 + Ga0059261_4006 0.72 -0.5
4,122,218 + Ga0059261_4006 0.79 +0.1
4,122,218 + Ga0059261_4006 0.79 -0.3
4,122,219 - Ga0059261_4006 0.79 +0.7
4,122,265 + Ga0059261_4006 0.83 -0.1
4,122,265 + Ga0059261_4006 0.83 -0.9
4,122,265 + Ga0059261_4006 0.83 -0.1
4,122,265 + Ga0059261_4006 0.83 -0.6
4,122,265 + Ga0059261_4006 0.83 +0.9
4,122,266 - Ga0059261_4006 0.83 -0.0
4,122,266 - Ga0059261_4006 0.83 +0.1
4,122,266 - Ga0059261_4006 0.83 +1.1

Or see this region's nucleotide sequence