Experiment: Choline chloride 300 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt AO356_24210 and AO356_24215 are separated by 3 nucleotides AO356_24215 and AO356_24220 are separated by 355 nucleotides
AO356_24210: AO356_24210 - diguanylate cyclase, at 5,429,937 to 5,430,890
_24210
AO356_24215: AO356_24215 - chemotaxis protein CheC, at 5,430,894 to 5,431,904
_24215
AO356_24220: AO356_24220 - diguanylate cyclase, at 5,432,260 to 5,434,632
_24220
Position (kb) 5430
5431
5432 Strain fitness (log2 ratio) -2
-1
0
1
2 at 5429.981 kb on + strand at 5429.983 kb on + strand at 5429.983 kb on + strand at 5429.983 kb on + strand at 5429.984 kb on - strand at 5429.984 kb on - strand at 5430.075 kb on - strand, within AO356_24210 at 5430.280 kb on + strand, within AO356_24210 at 5430.344 kb on - strand, within AO356_24210 at 5430.361 kb on + strand, within AO356_24210 at 5430.400 kb on + strand, within AO356_24210 at 5430.400 kb on + strand, within AO356_24210 at 5430.401 kb on - strand, within AO356_24210 at 5430.401 kb on - strand, within AO356_24210 at 5430.496 kb on + strand, within AO356_24210 at 5430.496 kb on + strand, within AO356_24210 at 5430.496 kb on + strand, within AO356_24210 at 5430.497 kb on - strand, within AO356_24210 at 5430.513 kb on - strand, within AO356_24210 at 5430.513 kb on - strand, within AO356_24210 at 5430.513 kb on - strand, within AO356_24210 at 5430.598 kb on + strand, within AO356_24210 at 5430.599 kb on - strand, within AO356_24210 at 5430.619 kb on + strand, within AO356_24210 at 5430.619 kb on + strand, within AO356_24210 at 5430.907 kb on + strand at 5430.994 kb on + strand at 5430.994 kb on + strand at 5430.995 kb on - strand, within AO356_24215 at 5431.186 kb on + strand, within AO356_24215 at 5431.611 kb on + strand, within AO356_24215 at 5431.611 kb on + strand, within AO356_24215 at 5431.612 kb on - strand, within AO356_24215 at 5431.612 kb on - strand, within AO356_24215 at 5431.695 kb on + strand, within AO356_24215 at 5431.933 kb on + strand at 5431.948 kb on + strand at 5431.948 kb on + strand at 5431.948 kb on + strand at 5431.949 kb on - strand at 5431.949 kb on - strand at 5431.986 kb on - strand at 5431.995 kb on - strand at 5432.031 kb on + strand at 5432.031 kb on + strand at 5432.032 kb on - strand at 5432.140 kb on - strand at 5432.141 kb on + strand at 5432.282 kb on + strand at 5432.282 kb on + strand at 5432.283 kb on - strand at 5432.380 kb on + strand at 5432.380 kb on + strand at 5432.381 kb on - strand at 5432.381 kb on - strand at 5432.381 kb on - strand at 5432.381 kb on - strand at 5432.381 kb on - strand at 5432.440 kb on + strand at 5432.441 kb on - strand at 5432.441 kb on - strand at 5432.512 kb on + strand, within AO356_24220 at 5432.513 kb on - strand, within AO356_24220 at 5432.513 kb on - strand, within AO356_24220 at 5432.572 kb on + strand, within AO356_24220 at 5432.572 kb on + strand, within AO356_24220 at 5432.572 kb on + strand, within AO356_24220 at 5432.572 kb on + strand, within AO356_24220 at 5432.573 kb on - strand, within AO356_24220 at 5432.573 kb on - strand, within AO356_24220 at 5432.578 kb on + strand, within AO356_24220 at 5432.579 kb on - strand, within AO356_24220 at 5432.579 kb on - strand, within AO356_24220 at 5432.579 kb on - strand, within AO356_24220 at 5432.579 kb on - strand, within AO356_24220 at 5432.645 kb on - strand, within AO356_24220 at 5432.902 kb on + strand, within AO356_24220 at 5432.903 kb on - strand, within AO356_24220 at 5432.903 kb on - strand, within AO356_24220
Per-strain Table
Position Strand Gene LocusTag Fraction Choline chloride 300 mM remove 5,429,981 + +0.1 5,429,983 + +1.6 5,429,983 + -0.3 5,429,983 + -0.0 5,429,984 - +0.0 5,429,984 - +0.4 5,430,075 - AO356_24210 0.14 -0.3 5,430,280 + AO356_24210 0.36 +0.0 5,430,344 - AO356_24210 0.43 -0.7 5,430,361 + AO356_24210 0.44 +0.0 5,430,400 + AO356_24210 0.49 -0.3 5,430,400 + AO356_24210 0.49 -1.5 5,430,401 - AO356_24210 0.49 +0.4 5,430,401 - AO356_24210 0.49 +0.4 5,430,496 + AO356_24210 0.59 -0.3 5,430,496 + AO356_24210 0.59 +0.7 5,430,496 + AO356_24210 0.59 -0.4 5,430,497 - AO356_24210 0.59 +0.5 5,430,513 - AO356_24210 0.60 -1.0 5,430,513 - AO356_24210 0.60 -0.2 5,430,513 - AO356_24210 0.60 +0.6 5,430,598 + AO356_24210 0.69 +0.0 5,430,599 - AO356_24210 0.69 -0.3 5,430,619 + AO356_24210 0.71 +0.0 5,430,619 + AO356_24210 0.71 +1.0 5,430,907 + -1.0 5,430,994 + +0.4 5,430,994 + +0.9 5,430,995 - AO356_24215 0.10 -0.3 5,431,186 + AO356_24215 0.29 -0.3 5,431,611 + AO356_24215 0.71 -0.8 5,431,611 + AO356_24215 0.71 +0.6 5,431,612 - AO356_24215 0.71 -0.3 5,431,612 - AO356_24215 0.71 -0.5 5,431,695 + AO356_24215 0.79 -0.5 5,431,933 + -1.3 5,431,948 + -0.3 5,431,948 + +0.5 5,431,948 + -0.4 5,431,949 - -0.5 5,431,949 - +1.6 5,431,986 - -1.2 5,431,995 - -0.2 5,432,031 + +2.0 5,432,031 + -0.2 5,432,032 - +0.4 5,432,140 - -0.2 5,432,141 + -0.5 5,432,282 + -0.7 5,432,282 + -0.0 5,432,283 - +0.3 5,432,380 + +0.4 5,432,380 + +0.5 5,432,381 - -0.1 5,432,381 - +0.1 5,432,381 - +0.1 5,432,381 - -1.0 5,432,381 - -1.9 5,432,440 + -0.0 5,432,441 - +0.9 5,432,441 - +0.3 5,432,512 + AO356_24220 0.11 +0.3 5,432,513 - AO356_24220 0.11 +0.0 5,432,513 - AO356_24220 0.11 +0.4 5,432,572 + AO356_24220 0.13 +0.4 5,432,572 + AO356_24220 0.13 -0.1 5,432,572 + AO356_24220 0.13 -0.6 5,432,572 + AO356_24220 0.13 +0.2 5,432,573 - AO356_24220 0.13 +0.4 5,432,573 - AO356_24220 0.13 -0.0 5,432,578 + AO356_24220 0.13 +0.3 5,432,579 - AO356_24220 0.13 +0.2 5,432,579 - AO356_24220 0.13 +1.0 5,432,579 - AO356_24220 0.13 -0.0 5,432,579 - AO356_24220 0.13 +1.6 5,432,645 - AO356_24220 0.16 -0.8 5,432,902 + AO356_24220 0.27 -1.2 5,432,903 - AO356_24220 0.27 +0.1 5,432,903 - AO356_24220 0.27 +0.7
Or see this region's nucleotide sequence