Strain Fitness in Pseudomonas fluorescens FW300-N2C3 around AO356_20740

Experiment: Choline chloride 300 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAO356_20730 and AO356_20735 are separated by 74 nucleotidesAO356_20735 and AO356_20740 are separated by 99 nucleotidesAO356_20740 and AO356_20745 are separated by 47 nucleotidesAO356_20745 and AO356_20750 are separated by 47 nucleotides AO356_20730: AO356_20730 - hypothetical protein, at 4,621,834 to 4,622,394 _20730 AO356_20735: AO356_20735 - Suppressor of fused protein (SUFU), at 4,622,469 to 4,623,284 _20735 AO356_20740: AO356_20740 - cell wall assembly protein, at 4,623,384 to 4,624,007 _20740 AO356_20745: AO356_20745 - hypothetical protein, at 4,624,055 to 4,624,741 _20745 AO356_20750: AO356_20750 - hypothetical protein, at 4,624,789 to 4,625,178 _20750 Position (kb) 4623 4624 4625Strain fitness (log2 ratio) -2 -1 0 1at 4622.394 kb on + strandat 4622.394 kb on + strandat 4622.394 kb on + strandat 4622.394 kb on + strandat 4622.394 kb on + strandat 4622.395 kb on - strandat 4622.395 kb on - strandat 4622.395 kb on - strandat 4622.395 kb on - strandat 4622.436 kb on + strandat 4622.436 kb on + strandat 4622.436 kb on + strandat 4622.448 kb on - strandat 4622.665 kb on - strand, within AO356_20735at 4622.860 kb on - strand, within AO356_20735at 4623.154 kb on + strand, within AO356_20735at 4623.180 kb on + strand, within AO356_20735at 4623.180 kb on + strand, within AO356_20735at 4623.180 kb on + strand, within AO356_20735at 4623.180 kb on + strand, within AO356_20735at 4623.251 kb on + strandat 4623.251 kb on + strandat 4623.251 kb on + strandat 4623.252 kb on - strandat 4623.252 kb on - strandat 4623.382 kb on - strandat 4623.522 kb on + strand, within AO356_20740at 4623.523 kb on - strand, within AO356_20740at 4623.531 kb on + strand, within AO356_20740at 4623.531 kb on + strand, within AO356_20740at 4623.531 kb on + strand, within AO356_20740at 4623.532 kb on - strand, within AO356_20740at 4623.532 kb on - strand, within AO356_20740at 4623.532 kb on - strand, within AO356_20740at 4623.532 kb on - strand, within AO356_20740at 4623.532 kb on - strand, within AO356_20740at 4623.589 kb on - strand, within AO356_20740at 4623.612 kb on + strand, within AO356_20740at 4623.612 kb on + strand, within AO356_20740at 4623.613 kb on - strand, within AO356_20740at 4623.613 kb on - strand, within AO356_20740at 4623.707 kb on + strand, within AO356_20740at 4623.707 kb on + strand, within AO356_20740at 4623.804 kb on + strand, within AO356_20740at 4623.804 kb on + strand, within AO356_20740at 4623.804 kb on + strand, within AO356_20740at 4623.804 kb on + strand, within AO356_20740at 4623.804 kb on + strand, within AO356_20740at 4623.805 kb on - strand, within AO356_20740at 4623.805 kb on - strand, within AO356_20740at 4623.805 kb on - strand, within AO356_20740at 4623.805 kb on - strand, within AO356_20740at 4623.805 kb on - strand, within AO356_20740at 4623.805 kb on - strand, within AO356_20740at 4623.805 kb on - strand, within AO356_20740at 4623.834 kb on + strand, within AO356_20740at 4623.835 kb on - strand, within AO356_20740at 4623.849 kb on + strand, within AO356_20740at 4623.849 kb on + strand, within AO356_20740at 4623.849 kb on + strand, within AO356_20740at 4623.849 kb on + strand, within AO356_20740at 4623.849 kb on + strand, within AO356_20740at 4623.849 kb on + strand, within AO356_20740at 4623.849 kb on + strand, within AO356_20740at 4623.849 kb on + strand, within AO356_20740at 4623.850 kb on - strand, within AO356_20740at 4623.854 kb on - strand, within AO356_20740at 4623.878 kb on + strand, within AO356_20740at 4623.878 kb on + strand, within AO356_20740at 4623.878 kb on + strand, within AO356_20740at 4623.878 kb on + strand, within AO356_20740at 4623.879 kb on - strand, within AO356_20740at 4624.119 kb on + strandat 4624.120 kb on - strandat 4624.132 kb on + strand, within AO356_20745at 4624.134 kb on + strand, within AO356_20745at 4624.134 kb on + strand, within AO356_20745at 4624.135 kb on - strand, within AO356_20745at 4624.135 kb on - strand, within AO356_20745at 4624.135 kb on - strand, within AO356_20745at 4624.135 kb on - strand, within AO356_20745at 4624.135 kb on - strand, within AO356_20745at 4624.188 kb on + strand, within AO356_20745at 4624.212 kb on + strand, within AO356_20745at 4624.236 kb on + strand, within AO356_20745at 4624.236 kb on + strand, within AO356_20745at 4624.350 kb on + strand, within AO356_20745at 4624.350 kb on + strand, within AO356_20745at 4624.449 kb on + strand, within AO356_20745at 4624.449 kb on + strand, within AO356_20745at 4624.449 kb on + strand, within AO356_20745at 4624.449 kb on + strand, within AO356_20745at 4624.449 kb on + strand, within AO356_20745at 4624.449 kb on + strand, within AO356_20745at 4624.561 kb on - strand, within AO356_20745at 4624.561 kb on - strand, within AO356_20745at 4624.602 kb on + strand, within AO356_20745at 4624.602 kb on + strand, within AO356_20745at 4624.603 kb on - strand, within AO356_20745at 4624.603 kb on - strand, within AO356_20745at 4624.603 kb on - strand, within AO356_20745at 4624.603 kb on - strand, within AO356_20745at 4624.603 kb on - strand, within AO356_20745at 4624.603 kb on - strand, within AO356_20745at 4624.846 kb on + strand, within AO356_20750at 4624.846 kb on + strand, within AO356_20750at 4624.846 kb on + strand, within AO356_20750at 4624.846 kb on + strand, within AO356_20750at 4624.846 kb on + strand, within AO356_20750at 4624.847 kb on - strand, within AO356_20750at 4624.847 kb on - strand, within AO356_20750at 4624.847 kb on - strand, within AO356_20750at 4624.847 kb on - strand, within AO356_20750at 4624.847 kb on - strand, within AO356_20750at 4624.847 kb on - strand, within AO356_20750at 4624.874 kb on - strand, within AO356_20750at 4624.886 kb on + strand, within AO356_20750at 4624.887 kb on - strand, within AO356_20750at 4624.950 kb on - strand, within AO356_20750at 4624.950 kb on - strand, within AO356_20750at 4624.976 kb on - strand, within AO356_20750

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Per-strain Table

Position Strand Gene LocusTag Fraction Choline chloride 300 mM
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4,622,394 + -0.3
4,622,394 + +0.8
4,622,394 + +0.1
4,622,394 + +0.4
4,622,394 + -0.4
4,622,395 - +0.8
4,622,395 - +1.3
4,622,395 - -0.9
4,622,395 - -1.9
4,622,436 + -0.3
4,622,436 + +0.7
4,622,436 + +0.1
4,622,448 - -1.1
4,622,665 - AO356_20735 0.24 -0.9
4,622,860 - AO356_20735 0.48 +1.2
4,623,154 + AO356_20735 0.84 -1.1
4,623,180 + AO356_20735 0.87 +0.4
4,623,180 + AO356_20735 0.87 +0.2
4,623,180 + AO356_20735 0.87 -1.4
4,623,180 + AO356_20735 0.87 -1.1
4,623,251 + +0.2
4,623,251 + +0.4
4,623,251 + +1.0
4,623,252 - +0.4
4,623,252 - -0.3
4,623,382 - +0.2
4,623,522 + AO356_20740 0.22 -1.4
4,623,523 - AO356_20740 0.22 +0.6
4,623,531 + AO356_20740 0.24 -2.3
4,623,531 + AO356_20740 0.24 -0.4
4,623,531 + AO356_20740 0.24 -0.8
4,623,532 - AO356_20740 0.24 -0.2
4,623,532 - AO356_20740 0.24 -0.6
4,623,532 - AO356_20740 0.24 +0.1
4,623,532 - AO356_20740 0.24 +0.9
4,623,532 - AO356_20740 0.24 +0.6
4,623,589 - AO356_20740 0.33 -1.6
4,623,612 + AO356_20740 0.37 +0.1
4,623,612 + AO356_20740 0.37 -1.2
4,623,613 - AO356_20740 0.37 -0.2
4,623,613 - AO356_20740 0.37 -2.5
4,623,707 + AO356_20740 0.52 -0.3
4,623,707 + AO356_20740 0.52 +0.0
4,623,804 + AO356_20740 0.67 -0.2
4,623,804 + AO356_20740 0.67 +0.6
4,623,804 + AO356_20740 0.67 -0.1
4,623,804 + AO356_20740 0.67 +0.8
4,623,804 + AO356_20740 0.67 -1.5
4,623,805 - AO356_20740 0.67 -0.2
4,623,805 - AO356_20740 0.67 +0.3
4,623,805 - AO356_20740 0.67 +0.3
4,623,805 - AO356_20740 0.67 +1.2
4,623,805 - AO356_20740 0.67 -1.8
4,623,805 - AO356_20740 0.67 +0.1
4,623,805 - AO356_20740 0.67 +0.4
4,623,834 + AO356_20740 0.72 +0.4
4,623,835 - AO356_20740 0.72 -0.6
4,623,849 + AO356_20740 0.75 -2.2
4,623,849 + AO356_20740 0.75 -0.2
4,623,849 + AO356_20740 0.75 +0.6
4,623,849 + AO356_20740 0.75 -0.3
4,623,849 + AO356_20740 0.75 +1.1
4,623,849 + AO356_20740 0.75 +0.3
4,623,849 + AO356_20740 0.75 +0.4
4,623,849 + AO356_20740 0.75 -0.3
4,623,850 - AO356_20740 0.75 +0.0
4,623,854 - AO356_20740 0.75 -0.6
4,623,878 + AO356_20740 0.79 +0.6
4,623,878 + AO356_20740 0.79 -0.4
4,623,878 + AO356_20740 0.79 -0.1
4,623,878 + AO356_20740 0.79 -0.2
4,623,879 - AO356_20740 0.79 -0.8
4,624,119 + +0.7
4,624,120 - -0.2
4,624,132 + AO356_20745 0.11 +0.4
4,624,134 + AO356_20745 0.11 +0.0
4,624,134 + AO356_20745 0.11 -0.7
4,624,135 - AO356_20745 0.12 -0.4
4,624,135 - AO356_20745 0.12 +0.6
4,624,135 - AO356_20745 0.12 -0.8
4,624,135 - AO356_20745 0.12 -1.1
4,624,135 - AO356_20745 0.12 -0.4
4,624,188 + AO356_20745 0.19 +0.0
4,624,212 + AO356_20745 0.23 -0.4
4,624,236 + AO356_20745 0.26 -0.8
4,624,236 + AO356_20745 0.26 +0.2
4,624,350 + AO356_20745 0.43 +0.2
4,624,350 + AO356_20745 0.43 +0.0
4,624,449 + AO356_20745 0.57 -0.7
4,624,449 + AO356_20745 0.57 +0.4
4,624,449 + AO356_20745 0.57 +0.7
4,624,449 + AO356_20745 0.57 -1.3
4,624,449 + AO356_20745 0.57 +0.1
4,624,449 + AO356_20745 0.57 +0.6
4,624,561 - AO356_20745 0.74 -0.4
4,624,561 - AO356_20745 0.74 +0.1
4,624,602 + AO356_20745 0.80 -1.3
4,624,602 + AO356_20745 0.80 +0.2
4,624,603 - AO356_20745 0.80 +0.3
4,624,603 - AO356_20745 0.80 +0.6
4,624,603 - AO356_20745 0.80 -0.6
4,624,603 - AO356_20745 0.80 +1.0
4,624,603 - AO356_20745 0.80 +0.1
4,624,603 - AO356_20745 0.80 +0.3
4,624,846 + AO356_20750 0.15 +0.0
4,624,846 + AO356_20750 0.15 +0.3
4,624,846 + AO356_20750 0.15 -1.4
4,624,846 + AO356_20750 0.15 +0.5
4,624,846 + AO356_20750 0.15 +0.2
4,624,847 - AO356_20750 0.15 +0.2
4,624,847 - AO356_20750 0.15 +0.1
4,624,847 - AO356_20750 0.15 +0.5
4,624,847 - AO356_20750 0.15 +0.0
4,624,847 - AO356_20750 0.15 -0.6
4,624,847 - AO356_20750 0.15 +0.2
4,624,874 - AO356_20750 0.22 +0.0
4,624,886 + AO356_20750 0.25 +0.5
4,624,887 - AO356_20750 0.25 +0.6
4,624,950 - AO356_20750 0.41 +0.3
4,624,950 - AO356_20750 0.41 +0.6
4,624,976 - AO356_20750 0.48 +0.3

Or see this region's nucleotide sequence