Experiment: Choline chloride 300 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt AO356_06240 and AO356_06245 are separated by 472 nucleotides AO356_06245 and AO356_06250 are separated by 48 nucleotides
AO356_06240: AO356_06240 - peptide chain release factor 2, at 1,381,995 to 1,382,876
_06240
AO356_06245: AO356_06245 - diguanylate cyclase, at 1,383,349 to 1,384,350
_06245
AO356_06250: AO356_06250 - chemotaxis protein CheY, at 1,384,399 to 1,385,409
_06250
Position (kb)
1383
1384
1385 Strain fitness (log2 ratio)
-3
-2
-1
0
1
2 at 1383.135 kb on - strand at 1383.140 kb on - strand at 1383.140 kb on - strand at 1383.140 kb on - strand at 1383.140 kb on - strand at 1383.140 kb on - strand at 1383.140 kb on - strand at 1383.140 kb on - strand at 1383.140 kb on - strand at 1383.140 kb on - strand at 1383.140 kb on - strand at 1383.209 kb on + strand at 1383.313 kb on + strand at 1383.347 kb on + strand at 1383.347 kb on + strand at 1383.347 kb on + strand at 1383.348 kb on - strand at 1383.348 kb on - strand at 1383.348 kb on - strand at 1383.348 kb on - strand at 1383.348 kb on - strand at 1383.350 kb on + strand at 1383.350 kb on + strand at 1383.350 kb on + strand at 1383.351 kb on - strand at 1383.351 kb on - strand at 1383.351 kb on - strand at 1383.370 kb on - strand at 1383.370 kb on - strand at 1383.392 kb on + strand at 1383.713 kb on + strand, within AO356_06245 at 1383.713 kb on + strand, within AO356_06245 at 1383.714 kb on - strand, within AO356_06245 at 1383.714 kb on - strand, within AO356_06245 at 1383.714 kb on - strand, within AO356_06245 at 1383.725 kb on + strand, within AO356_06245 at 1383.725 kb on + strand, within AO356_06245 at 1383.725 kb on + strand, within AO356_06245 at 1383.726 kb on - strand, within AO356_06245 at 1383.726 kb on - strand, within AO356_06245 at 1383.797 kb on + strand, within AO356_06245 at 1383.797 kb on + strand, within AO356_06245 at 1383.797 kb on + strand, within AO356_06245 at 1383.798 kb on - strand, within AO356_06245 at 1383.798 kb on - strand, within AO356_06245 at 1383.912 kb on - strand, within AO356_06245 at 1383.941 kb on + strand, within AO356_06245 at 1383.941 kb on + strand, within AO356_06245 at 1383.941 kb on + strand, within AO356_06245 at 1383.941 kb on + strand, within AO356_06245 at 1383.941 kb on + strand, within AO356_06245 at 1383.941 kb on + strand, within AO356_06245 at 1383.942 kb on - strand, within AO356_06245 at 1383.942 kb on - strand, within AO356_06245 at 1383.942 kb on - strand, within AO356_06245 at 1383.942 kb on - strand, within AO356_06245 at 1383.957 kb on - strand, within AO356_06245 at 1384.005 kb on - strand, within AO356_06245 at 1384.080 kb on + strand, within AO356_06245 at 1384.101 kb on + strand, within AO356_06245 at 1384.102 kb on - strand, within AO356_06245 at 1384.176 kb on + strand, within AO356_06245 at 1384.177 kb on - strand, within AO356_06245 at 1384.177 kb on - strand, within AO356_06245 at 1384.361 kb on + strand at 1384.362 kb on - strand at 1384.362 kb on - strand at 1384.362 kb on - strand at 1384.362 kb on - strand at 1384.452 kb on + strand at 1384.452 kb on + strand at 1384.496 kb on + strand at 1384.496 kb on + strand at 1384.497 kb on - strand at 1384.597 kb on + strand, within AO356_06250 at 1384.597 kb on + strand, within AO356_06250 at 1384.622 kb on + strand, within AO356_06250 at 1384.622 kb on + strand, within AO356_06250 at 1384.974 kb on + strand, within AO356_06250 at 1384.974 kb on + strand, within AO356_06250 at 1385.276 kb on + strand, within AO356_06250 at 1385.276 kb on + strand, within AO356_06250 at 1385.276 kb on + strand, within AO356_06250 at 1385.277 kb on - strand, within AO356_06250
Per-strain Table
Position Strand Gene LocusTag Fraction Choline chloride 300 mM remove 1,383,135 - -0.4 1,383,140 - +0.2 1,383,140 - +0.0 1,383,140 - +1.6 1,383,140 - +0.6 1,383,140 - -0.4 1,383,140 - +0.9 1,383,140 - -1.7 1,383,140 - +0.3 1,383,140 - -1.3 1,383,140 - -0.3 1,383,209 + -2.8 1,383,313 + +0.6 1,383,347 + +0.6 1,383,347 + +0.4 1,383,347 + -0.7 1,383,348 - -0.6 1,383,348 - +0.5 1,383,348 - +0.5 1,383,348 - -0.8 1,383,348 - +1.1 1,383,350 + -1.4 1,383,350 + -0.3 1,383,350 + -0.5 1,383,351 - +0.5 1,383,351 - +0.3 1,383,351 - +0.1 1,383,370 - -0.6 1,383,370 - +0.0 1,383,392 + -0.2 1,383,713 + AO356_06245 0.36 +0.2 1,383,713 + AO356_06245 0.36 +0.9 1,383,714 - AO356_06245 0.36 +0.7 1,383,714 - AO356_06245 0.36 -0.8 1,383,714 - AO356_06245 0.36 +0.2 1,383,725 + AO356_06245 0.38 +0.5 1,383,725 + AO356_06245 0.38 +1.3 1,383,725 + AO356_06245 0.38 -0.4 1,383,726 - AO356_06245 0.38 +0.5 1,383,726 - AO356_06245 0.38 +0.8 1,383,797 + AO356_06245 0.45 +2.1 1,383,797 + AO356_06245 0.45 -0.5 1,383,797 + AO356_06245 0.45 -0.7 1,383,798 - AO356_06245 0.45 +0.2 1,383,798 - AO356_06245 0.45 +0.6 1,383,912 - AO356_06245 0.56 -0.2 1,383,941 + AO356_06245 0.59 +0.8 1,383,941 + AO356_06245 0.59 -0.0 1,383,941 + AO356_06245 0.59 +0.2 1,383,941 + AO356_06245 0.59 +0.5 1,383,941 + AO356_06245 0.59 +0.3 1,383,941 + AO356_06245 0.59 +0.5 1,383,942 - AO356_06245 0.59 +0.9 1,383,942 - AO356_06245 0.59 +0.1 1,383,942 - AO356_06245 0.59 -0.5 1,383,942 - AO356_06245 0.59 +0.9 1,383,957 - AO356_06245 0.61 +0.1 1,384,005 - AO356_06245 0.65 +0.8 1,384,080 + AO356_06245 0.73 -0.4 1,384,101 + AO356_06245 0.75 +0.2 1,384,102 - AO356_06245 0.75 -0.2 1,384,176 + AO356_06245 0.83 +0.8 1,384,177 - AO356_06245 0.83 +0.2 1,384,177 - AO356_06245 0.83 +1.6 1,384,361 + +0.7 1,384,362 - +1.8 1,384,362 - +0.3 1,384,362 - +0.0 1,384,362 - +1.1 1,384,452 + -1.4 1,384,452 + +0.2 1,384,496 + +0.4 1,384,496 + -0.9 1,384,497 - +0.2 1,384,597 + AO356_06250 0.20 +0.3 1,384,597 + AO356_06250 0.20 +0.8 1,384,622 + AO356_06250 0.22 +0.2 1,384,622 + AO356_06250 0.22 -0.6 1,384,974 + AO356_06250 0.57 +0.3 1,384,974 + AO356_06250 0.57 -2.3 1,385,276 + AO356_06250 0.87 -1.2 1,385,276 + AO356_06250 0.87 -1.3 1,385,276 + AO356_06250 0.87 -0.5 1,385,277 - AO356_06250 0.87 +0.8
Or see this region's nucleotide sequence