Experiment: Choline chloride 300 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt AO356_02890 and AO356_02895 are separated by 281 nucleotides AO356_02895 and AO356_02900 are separated by 109 nucleotides AO356_02900 and AO356_02905 are separated by 70 nucleotides AO356_02905 and AO356_02910 are separated by 115 nucleotides
AO356_02890: AO356_02890 - non-ribosomal peptide synthetase, at 635,943 to 648,929
_02890
AO356_02895: AO356_02895 - RNA polymerase subunit sigma-70, at 649,211 to 649,759
_02895
AO356_02900: AO356_02900 - acetyltransferase, at 649,869 to 650,882
_02900
AO356_02905: AO356_02905 - amino acid ABC transporter substrate-binding protein, at 650,953 to 651,729
_02905
AO356_02910: AO356_02910 - TetR family transcriptional regulator, at 651,845 to 652,471
_02910
Position (kb) 649
650
651 Strain fitness (log2 ratio) -1
0
1
2 at 648.994 kb on - strand at 648.994 kb on - strand at 648.998 kb on - strand at 648.998 kb on - strand at 649.090 kb on - strand at 649.224 kb on + strand at 649.224 kb on + strand at 649.225 kb on - strand at 649.225 kb on - strand at 649.225 kb on - strand at 649.225 kb on - strand at 649.225 kb on - strand at 649.225 kb on - strand at 649.406 kb on + strand, within AO356_02895 at 649.406 kb on + strand, within AO356_02895 at 649.406 kb on + strand, within AO356_02895 at 649.406 kb on + strand, within AO356_02895 at 649.406 kb on + strand, within AO356_02895 at 649.407 kb on - strand, within AO356_02895 at 649.407 kb on - strand, within AO356_02895 at 649.472 kb on + strand, within AO356_02895 at 649.473 kb on - strand, within AO356_02895 at 649.538 kb on - strand, within AO356_02895 at 649.616 kb on + strand, within AO356_02895 at 649.616 kb on + strand, within AO356_02895 at 649.742 kb on - strand at 649.742 kb on - strand at 649.862 kb on + strand at 649.863 kb on - strand at 649.870 kb on + strand at 649.870 kb on + strand at 649.870 kb on + strand at 649.870 kb on + strand at 649.870 kb on + strand at 649.870 kb on + strand at 649.870 kb on + strand at 649.870 kb on + strand at 649.870 kb on + strand at 649.870 kb on + strand at 649.870 kb on + strand at 649.870 kb on + strand at 649.870 kb on + strand at 649.870 kb on + strand at 649.871 kb on - strand at 649.871 kb on - strand at 649.871 kb on - strand at 650.056 kb on + strand, within AO356_02900 at 650.056 kb on + strand, within AO356_02900 at 650.056 kb on + strand, within AO356_02900 at 650.057 kb on - strand, within AO356_02900 at 650.057 kb on - strand, within AO356_02900 at 650.144 kb on - strand, within AO356_02900 at 650.158 kb on + strand, within AO356_02900 at 650.158 kb on + strand, within AO356_02900 at 650.158 kb on + strand, within AO356_02900 at 650.158 kb on + strand, within AO356_02900 at 650.158 kb on + strand, within AO356_02900 at 650.159 kb on - strand, within AO356_02900 at 650.159 kb on - strand, within AO356_02900 at 650.159 kb on - strand, within AO356_02900 at 650.159 kb on - strand, within AO356_02900 at 650.191 kb on + strand, within AO356_02900 at 650.203 kb on + strand, within AO356_02900 at 650.203 kb on + strand, within AO356_02900 at 650.204 kb on - strand, within AO356_02900 at 650.275 kb on + strand, within AO356_02900 at 650.425 kb on + strand, within AO356_02900 at 650.425 kb on + strand, within AO356_02900 at 650.425 kb on + strand, within AO356_02900 at 650.426 kb on - strand, within AO356_02900 at 650.426 kb on - strand, within AO356_02900 at 650.498 kb on - strand, within AO356_02900 at 650.498 kb on - strand, within AO356_02900 at 650.566 kb on + strand, within AO356_02900 at 650.567 kb on - strand, within AO356_02900 at 650.567 kb on - strand, within AO356_02900 at 650.596 kb on - strand, within AO356_02900 at 650.680 kb on + strand, within AO356_02900 at 650.680 kb on + strand, within AO356_02900 at 650.898 kb on - strand at 650.907 kb on + strand at 650.943 kb on - strand at 650.988 kb on - strand at 651.098 kb on + strand, within AO356_02905 at 651.099 kb on - strand, within AO356_02905 at 651.161 kb on + strand, within AO356_02905 at 651.161 kb on + strand, within AO356_02905 at 651.161 kb on + strand, within AO356_02905 at 651.162 kb on - strand, within AO356_02905 at 651.174 kb on - strand, within AO356_02905 at 651.242 kb on + strand, within AO356_02905 at 651.242 kb on + strand, within AO356_02905 at 651.242 kb on + strand, within AO356_02905 at 651.243 kb on - strand, within AO356_02905 at 651.243 kb on - strand, within AO356_02905 at 651.243 kb on - strand, within AO356_02905 at 651.260 kb on + strand, within AO356_02905 at 651.260 kb on + strand, within AO356_02905 at 651.261 kb on - strand, within AO356_02905 at 651.261 kb on - strand, within AO356_02905 at 651.261 kb on - strand, within AO356_02905 at 651.309 kb on - strand, within AO356_02905 at 651.309 kb on - strand, within AO356_02905 at 651.548 kb on + strand, within AO356_02905 at 651.549 kb on - strand, within AO356_02905 at 651.630 kb on - strand, within AO356_02905 at 651.630 kb on - strand, within AO356_02905 at 651.630 kb on - strand, within AO356_02905 at 651.630 kb on - strand, within AO356_02905 at 651.753 kb on + strand at 651.753 kb on + strand at 651.754 kb on - strand at 651.754 kb on - strand at 651.781 kb on + strand at 651.781 kb on + strand at 651.781 kb on + strand at 651.782 kb on - strand at 651.782 kb on - strand at 651.782 kb on - strand at 651.782 kb on - strand at 651.782 kb on - strand at 651.792 kb on + strand at 651.793 kb on - strand at 651.793 kb on - strand at 651.811 kb on - strand at 651.830 kb on + strand at 651.830 kb on + strand at 651.831 kb on - strand at 651.847 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Choline chloride 300 mM remove 648,994 - +0.6 648,994 - +0.8 648,998 - +0.6 648,998 - +1.6 649,090 - +1.2 649,224 + +1.2 649,224 + +1.3 649,225 - +1.1 649,225 - +1.9 649,225 - +1.6 649,225 - +0.8 649,225 - +1.2 649,225 - +1.6 649,406 + AO356_02895 0.36 +1.0 649,406 + AO356_02895 0.36 +1.2 649,406 + AO356_02895 0.36 +1.0 649,406 + AO356_02895 0.36 +2.1 649,406 + AO356_02895 0.36 +1.3 649,407 - AO356_02895 0.36 +1.2 649,407 - AO356_02895 0.36 +1.4 649,472 + AO356_02895 0.48 +1.5 649,473 - AO356_02895 0.48 +1.0 649,538 - AO356_02895 0.60 +1.4 649,616 + AO356_02895 0.74 +0.9 649,616 + AO356_02895 0.74 +1.2 649,742 - +1.2 649,742 - -0.2 649,862 + -0.1 649,863 - +0.9 649,870 + -0.2 649,870 + +0.7 649,870 + -0.3 649,870 + +0.9 649,870 + -0.2 649,870 + -1.7 649,870 + -0.1 649,870 + +0.8 649,870 + +1.7 649,870 + -0.0 649,870 + -0.2 649,870 + +0.1 649,870 + +0.2 649,870 + +0.7 649,871 - +0.5 649,871 - -0.2 649,871 - +1.5 650,056 + AO356_02900 0.18 +1.4 650,056 + AO356_02900 0.18 +1.0 650,056 + AO356_02900 0.18 +1.2 650,057 - AO356_02900 0.19 +0.5 650,057 - AO356_02900 0.19 +1.3 650,144 - AO356_02900 0.27 +1.6 650,158 + AO356_02900 0.29 +0.9 650,158 + AO356_02900 0.29 +1.0 650,158 + AO356_02900 0.29 +1.1 650,158 + AO356_02900 0.29 -0.3 650,158 + AO356_02900 0.29 +0.8 650,159 - AO356_02900 0.29 +0.7 650,159 - AO356_02900 0.29 +1.0 650,159 - AO356_02900 0.29 +1.0 650,159 - AO356_02900 0.29 +0.9 650,191 + AO356_02900 0.32 +0.6 650,203 + AO356_02900 0.33 +1.2 650,203 + AO356_02900 0.33 +1.0 650,204 - AO356_02900 0.33 +1.1 650,275 + AO356_02900 0.40 +0.5 650,425 + AO356_02900 0.55 +1.4 650,425 + AO356_02900 0.55 +1.3 650,425 + AO356_02900 0.55 +0.4 650,426 - AO356_02900 0.55 +1.2 650,426 - AO356_02900 0.55 +2.1 650,498 - AO356_02900 0.62 +2.1 650,498 - AO356_02900 0.62 +1.0 650,566 + AO356_02900 0.69 +1.5 650,567 - AO356_02900 0.69 +1.3 650,567 - AO356_02900 0.69 +1.9 650,596 - AO356_02900 0.72 +1.1 650,680 + AO356_02900 0.80 +1.7 650,680 + AO356_02900 0.80 -0.7 650,898 - +0.9 650,907 + +0.7 650,943 - +1.6 650,988 - +1.3 651,098 + AO356_02905 0.19 +0.1 651,099 - AO356_02905 0.19 +0.5 651,161 + AO356_02905 0.27 +0.7 651,161 + AO356_02905 0.27 +0.5 651,161 + AO356_02905 0.27 +0.5 651,162 - AO356_02905 0.27 +0.8 651,174 - AO356_02905 0.28 -0.5 651,242 + AO356_02905 0.37 +1.5 651,242 + AO356_02905 0.37 +0.3 651,242 + AO356_02905 0.37 +0.2 651,243 - AO356_02905 0.37 +0.4 651,243 - AO356_02905 0.37 +0.2 651,243 - AO356_02905 0.37 +0.7 651,260 + AO356_02905 0.40 +0.4 651,260 + AO356_02905 0.40 +0.5 651,261 - AO356_02905 0.40 -1.0 651,261 - AO356_02905 0.40 +0.4 651,261 - AO356_02905 0.40 -0.2 651,309 - AO356_02905 0.46 +0.0 651,309 - AO356_02905 0.46 +0.3 651,548 + AO356_02905 0.77 -0.1 651,549 - AO356_02905 0.77 +0.2 651,630 - AO356_02905 0.87 +1.1 651,630 - AO356_02905 0.87 -0.2 651,630 - AO356_02905 0.87 -0.4 651,630 - AO356_02905 0.87 +0.7 651,753 + -0.4 651,753 + +0.4 651,754 - +0.3 651,754 - -0.4 651,781 + -0.7 651,781 + -0.0 651,781 + +0.7 651,782 - +0.7 651,782 - +0.7 651,782 - +0.2 651,782 - -1.3 651,782 - -0.3 651,792 + -1.2 651,793 - +0.1 651,793 - +0.4 651,811 - +0.2 651,830 + -0.5 651,830 + -0.4 651,831 - +0.2 651,847 - -0.5
Or see this region's nucleotide sequence