Strain Fitness in Pseudomonas fluorescens FW300-N2C3 around AO356_01250

Experiment: Choline chloride 300 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAO356_01245 and AO356_01250 are separated by 11 nucleotidesAO356_01250 and AO356_01255 are separated by 193 nucleotides AO356_01245: AO356_01245 - glycogen branching protein, at 285,822 to 288,056 _01245 AO356_01250: AO356_01250 - alpha-amylase, at 288,068 to 291,412 _01250 AO356_01255: AO356_01255 - alpha-1,4-glucan--maltose-1-phosphate maltosyltransferase, at 291,606 to 293,603 _01255 Position (kb) 288 289 290 291 292Strain fitness (log2 ratio) -2 -1 0 1 2at 287.176 kb on + strand, within AO356_01245at 287.177 kb on - strand, within AO356_01245at 287.177 kb on - strand, within AO356_01245at 287.212 kb on + strand, within AO356_01245at 287.213 kb on - strand, within AO356_01245at 287.275 kb on + strand, within AO356_01245at 287.275 kb on + strand, within AO356_01245at 287.276 kb on - strand, within AO356_01245at 287.456 kb on - strand, within AO356_01245at 287.461 kb on + strand, within AO356_01245at 287.693 kb on - strand, within AO356_01245at 287.693 kb on - strand, within AO356_01245at 287.728 kb on + strand, within AO356_01245at 287.728 kb on + strand, within AO356_01245at 287.780 kb on - strand, within AO356_01245at 287.780 kb on - strand, within AO356_01245at 287.780 kb on - strand, within AO356_01245at 287.780 kb on - strand, within AO356_01245at 288.069 kb on + strandat 288.171 kb on + strandat 288.184 kb on - strandat 288.184 kb on - strandat 288.260 kb on - strandat 288.277 kb on - strandat 288.277 kb on - strandat 288.312 kb on + strandat 288.313 kb on - strandat 288.313 kb on - strandat 288.396 kb on + strandat 288.433 kb on - strand, within AO356_01250at 288.433 kb on - strand, within AO356_01250at 288.498 kb on + strand, within AO356_01250at 288.499 kb on - strand, within AO356_01250at 288.499 kb on - strand, within AO356_01250at 288.795 kb on - strand, within AO356_01250at 288.864 kb on + strand, within AO356_01250at 288.864 kb on + strand, within AO356_01250at 288.864 kb on + strand, within AO356_01250at 288.864 kb on + strand, within AO356_01250at 288.865 kb on - strand, within AO356_01250at 288.966 kb on + strand, within AO356_01250at 288.967 kb on - strand, within AO356_01250at 289.043 kb on - strand, within AO356_01250at 289.068 kb on + strand, within AO356_01250at 289.180 kb on - strand, within AO356_01250at 289.180 kb on - strand, within AO356_01250at 289.184 kb on + strand, within AO356_01250at 289.184 kb on + strand, within AO356_01250at 289.184 kb on + strand, within AO356_01250at 289.185 kb on - strand, within AO356_01250at 289.359 kb on - strand, within AO356_01250at 289.737 kb on + strand, within AO356_01250at 289.737 kb on + strand, within AO356_01250at 289.738 kb on - strand, within AO356_01250at 289.738 kb on - strand, within AO356_01250at 289.746 kb on + strand, within AO356_01250at 289.924 kb on - strand, within AO356_01250at 290.092 kb on - strand, within AO356_01250at 290.208 kb on + strand, within AO356_01250at 290.208 kb on + strand, within AO356_01250at 290.209 kb on - strand, within AO356_01250at 290.209 kb on - strand, within AO356_01250at 290.241 kb on + strand, within AO356_01250at 290.242 kb on - strand, within AO356_01250at 290.244 kb on + strand, within AO356_01250at 290.244 kb on + strand, within AO356_01250at 290.245 kb on - strand, within AO356_01250at 290.245 kb on - strand, within AO356_01250at 290.245 kb on - strand, within AO356_01250at 290.377 kb on - strand, within AO356_01250at 290.379 kb on + strand, within AO356_01250at 290.380 kb on - strand, within AO356_01250at 290.380 kb on - strand, within AO356_01250at 290.391 kb on + strand, within AO356_01250at 290.391 kb on + strand, within AO356_01250at 290.538 kb on + strand, within AO356_01250at 290.538 kb on + strand, within AO356_01250at 290.538 kb on + strand, within AO356_01250at 290.538 kb on + strand, within AO356_01250at 290.538 kb on + strand, within AO356_01250at 290.538 kb on + strand, within AO356_01250at 290.538 kb on + strand, within AO356_01250at 290.538 kb on + strand, within AO356_01250at 290.538 kb on + strand, within AO356_01250at 290.538 kb on + strand, within AO356_01250at 290.538 kb on + strand, within AO356_01250at 290.539 kb on - strand, within AO356_01250at 290.539 kb on - strand, within AO356_01250at 290.539 kb on - strand, within AO356_01250at 290.539 kb on - strand, within AO356_01250at 290.539 kb on - strand, within AO356_01250at 290.619 kb on + strand, within AO356_01250at 290.619 kb on + strand, within AO356_01250at 290.619 kb on + strand, within AO356_01250at 290.620 kb on - strand, within AO356_01250at 290.620 kb on - strand, within AO356_01250at 290.677 kb on - strand, within AO356_01250at 290.677 kb on - strand, within AO356_01250at 290.901 kb on + strand, within AO356_01250at 290.902 kb on - strand, within AO356_01250at 290.902 kb on - strand, within AO356_01250at 290.973 kb on + strand, within AO356_01250at 290.974 kb on - strand, within AO356_01250at 290.977 kb on + strand, within AO356_01250at 290.977 kb on + strand, within AO356_01250at 290.977 kb on + strand, within AO356_01250at 290.977 kb on + strand, within AO356_01250at 290.977 kb on + strand, within AO356_01250at 290.977 kb on + strand, within AO356_01250at 290.977 kb on + strand, within AO356_01250at 290.978 kb on - strand, within AO356_01250at 290.978 kb on - strand, within AO356_01250at 290.978 kb on - strand, within AO356_01250at 290.978 kb on - strand, within AO356_01250at 291.000 kb on + strand, within AO356_01250at 291.000 kb on + strand, within AO356_01250at 291.000 kb on + strand, within AO356_01250at 291.000 kb on + strand, within AO356_01250at 291.000 kb on + strand, within AO356_01250at 291.000 kb on + strand, within AO356_01250at 291.000 kb on + strand, within AO356_01250at 291.001 kb on - strand, within AO356_01250at 291.001 kb on - strand, within AO356_01250at 291.001 kb on - strand, within AO356_01250at 291.001 kb on - strand, within AO356_01250at 291.001 kb on - strand, within AO356_01250at 291.178 kb on - strandat 291.219 kb on + strandat 291.219 kb on + strandat 291.220 kb on - strandat 291.324 kb on + strandat 291.426 kb on + strandat 291.426 kb on + strandat 291.427 kb on - strandat 291.427 kb on - strandat 291.434 kb on + strandat 291.434 kb on + strandat 291.435 kb on - strandat 291.671 kb on - strandat 291.878 kb on - strand, within AO356_01255at 291.899 kb on + strand, within AO356_01255at 291.994 kb on + strand, within AO356_01255at 291.995 kb on - strand, within AO356_01255at 292.063 kb on + strand, within AO356_01255at 292.063 kb on + strand, within AO356_01255at 292.063 kb on + strand, within AO356_01255at 292.064 kb on - strand, within AO356_01255at 292.225 kb on + strand, within AO356_01255at 292.226 kb on - strand, within AO356_01255at 292.264 kb on + strand, within AO356_01255at 292.264 kb on + strand, within AO356_01255at 292.264 kb on + strand, within AO356_01255at 292.264 kb on + strand, within AO356_01255at 292.264 kb on + strand, within AO356_01255at 292.264 kb on + strand, within AO356_01255at 292.264 kb on + strand, within AO356_01255at 292.265 kb on - strand, within AO356_01255at 292.265 kb on - strand, within AO356_01255at 292.265 kb on - strand, within AO356_01255at 292.268 kb on + strand, within AO356_01255at 292.268 kb on + strand, within AO356_01255at 292.268 kb on + strand, within AO356_01255at 292.269 kb on - strand, within AO356_01255at 292.269 kb on - strand, within AO356_01255at 292.269 kb on - strand, within AO356_01255at 292.269 kb on - strand, within AO356_01255at 292.270 kb on + strand, within AO356_01255at 292.270 kb on + strand, within AO356_01255at 292.270 kb on + strand, within AO356_01255at 292.270 kb on + strand, within AO356_01255at 292.271 kb on - strand, within AO356_01255at 292.271 kb on - strand, within AO356_01255at 292.271 kb on - strand, within AO356_01255at 292.271 kb on - strand, within AO356_01255at 292.271 kb on - strand, within AO356_01255at 292.271 kb on - strand, within AO356_01255at 292.271 kb on - strand, within AO356_01255at 292.271 kb on - strand, within AO356_01255at 292.271 kb on - strand, within AO356_01255

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Per-strain Table

Position Strand Gene LocusTag Fraction Choline chloride 300 mM
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287,176 + AO356_01245 0.61 -0.1
287,177 - AO356_01245 0.61 +0.1
287,177 - AO356_01245 0.61 +0.7
287,212 + AO356_01245 0.62 -0.7
287,213 - AO356_01245 0.62 -1.4
287,275 + AO356_01245 0.65 +0.1
287,275 + AO356_01245 0.65 +1.0
287,276 - AO356_01245 0.65 -1.7
287,456 - AO356_01245 0.73 +0.4
287,461 + AO356_01245 0.73 +0.6
287,693 - AO356_01245 0.84 -0.1
287,693 - AO356_01245 0.84 -0.4
287,728 + AO356_01245 0.85 +0.8
287,728 + AO356_01245 0.85 -0.1
287,780 - AO356_01245 0.88 -1.9
287,780 - AO356_01245 0.88 -0.0
287,780 - AO356_01245 0.88 +0.7
287,780 - AO356_01245 0.88 -0.1
288,069 + -0.5
288,171 + +0.8
288,184 - +1.2
288,184 - +0.7
288,260 - -0.3
288,277 - -0.3
288,277 - +0.7
288,312 + -0.3
288,313 - -0.8
288,313 - -2.0
288,396 + -0.0
288,433 - AO356_01250 0.11 +0.9
288,433 - AO356_01250 0.11 -1.1
288,498 + AO356_01250 0.13 +0.5
288,499 - AO356_01250 0.13 -1.4
288,499 - AO356_01250 0.13 +0.4
288,795 - AO356_01250 0.22 -1.3
288,864 + AO356_01250 0.24 +0.4
288,864 + AO356_01250 0.24 -0.9
288,864 + AO356_01250 0.24 +0.9
288,864 + AO356_01250 0.24 -1.6
288,865 - AO356_01250 0.24 +1.9
288,966 + AO356_01250 0.27 -0.1
288,967 - AO356_01250 0.27 -0.0
289,043 - AO356_01250 0.29 +0.4
289,068 + AO356_01250 0.30 -0.8
289,180 - AO356_01250 0.33 +0.3
289,180 - AO356_01250 0.33 -0.4
289,184 + AO356_01250 0.33 +0.1
289,184 + AO356_01250 0.33 -0.9
289,184 + AO356_01250 0.33 -0.6
289,185 - AO356_01250 0.33 +0.2
289,359 - AO356_01250 0.39 -0.4
289,737 + AO356_01250 0.50 +0.5
289,737 + AO356_01250 0.50 +0.5
289,738 - AO356_01250 0.50 -0.7
289,738 - AO356_01250 0.50 +0.2
289,746 + AO356_01250 0.50 +1.0
289,924 - AO356_01250 0.55 +1.0
290,092 - AO356_01250 0.61 -0.1
290,208 + AO356_01250 0.64 +0.4
290,208 + AO356_01250 0.64 +0.8
290,209 - AO356_01250 0.64 +0.5
290,209 - AO356_01250 0.64 +0.8
290,241 + AO356_01250 0.65 +0.4
290,242 - AO356_01250 0.65 -0.5
290,244 + AO356_01250 0.65 +0.4
290,244 + AO356_01250 0.65 -0.2
290,245 - AO356_01250 0.65 +0.4
290,245 - AO356_01250 0.65 -0.7
290,245 - AO356_01250 0.65 -0.1
290,377 - AO356_01250 0.69 +0.7
290,379 + AO356_01250 0.69 +1.0
290,380 - AO356_01250 0.69 +0.0
290,380 - AO356_01250 0.69 -0.3
290,391 + AO356_01250 0.69 +0.2
290,391 + AO356_01250 0.69 +1.0
290,538 + AO356_01250 0.74 +0.7
290,538 + AO356_01250 0.74 +1.6
290,538 + AO356_01250 0.74 +0.2
290,538 + AO356_01250 0.74 -0.1
290,538 + AO356_01250 0.74 -0.0
290,538 + AO356_01250 0.74 +0.7
290,538 + AO356_01250 0.74 -0.3
290,538 + AO356_01250 0.74 -0.1
290,538 + AO356_01250 0.74 +1.1
290,538 + AO356_01250 0.74 -1.2
290,538 + AO356_01250 0.74 -1.1
290,539 - AO356_01250 0.74 +0.5
290,539 - AO356_01250 0.74 +0.6
290,539 - AO356_01250 0.74 +0.2
290,539 - AO356_01250 0.74 +1.5
290,539 - AO356_01250 0.74 +0.8
290,619 + AO356_01250 0.76 +0.4
290,619 + AO356_01250 0.76 +1.0
290,619 + AO356_01250 0.76 +0.0
290,620 - AO356_01250 0.76 -0.1
290,620 - AO356_01250 0.76 +1.4
290,677 - AO356_01250 0.78 -0.3
290,677 - AO356_01250 0.78 +0.2
290,901 + AO356_01250 0.85 +0.9
290,902 - AO356_01250 0.85 -0.4
290,902 - AO356_01250 0.85 +0.7
290,973 + AO356_01250 0.87 -1.4
290,974 - AO356_01250 0.87 +0.8
290,977 + AO356_01250 0.87 +0.9
290,977 + AO356_01250 0.87 +0.1
290,977 + AO356_01250 0.87 -1.0
290,977 + AO356_01250 0.87 +0.4
290,977 + AO356_01250 0.87 +0.0
290,977 + AO356_01250 0.87 -0.7
290,977 + AO356_01250 0.87 -0.0
290,978 - AO356_01250 0.87 -0.5
290,978 - AO356_01250 0.87 +0.4
290,978 - AO356_01250 0.87 +0.5
290,978 - AO356_01250 0.87 -1.1
291,000 + AO356_01250 0.88 +1.5
291,000 + AO356_01250 0.88 +0.3
291,000 + AO356_01250 0.88 -0.4
291,000 + AO356_01250 0.88 -0.9
291,000 + AO356_01250 0.88 +0.2
291,000 + AO356_01250 0.88 +0.2
291,000 + AO356_01250 0.88 +0.7
291,001 - AO356_01250 0.88 -0.1
291,001 - AO356_01250 0.88 -0.7
291,001 - AO356_01250 0.88 -1.9
291,001 - AO356_01250 0.88 +0.8
291,001 - AO356_01250 0.88 -0.2
291,178 - -1.1
291,219 + -0.6
291,219 + -0.0
291,220 - +0.6
291,324 + +0.3
291,426 + +0.6
291,426 + -0.6
291,427 - +0.2
291,427 - -0.4
291,434 + +1.7
291,434 + +0.8
291,435 - +0.1
291,671 - -0.1
291,878 - AO356_01255 0.14 +1.0
291,899 + AO356_01255 0.15 -0.1
291,994 + AO356_01255 0.19 -0.1
291,995 - AO356_01255 0.19 +0.4
292,063 + AO356_01255 0.23 +0.1
292,063 + AO356_01255 0.23 -0.8
292,063 + AO356_01255 0.23 +0.6
292,064 - AO356_01255 0.23 +0.4
292,225 + AO356_01255 0.31 +0.9
292,226 - AO356_01255 0.31 -0.9
292,264 + AO356_01255 0.33 -0.7
292,264 + AO356_01255 0.33 +0.4
292,264 + AO356_01255 0.33 +0.9
292,264 + AO356_01255 0.33 -0.0
292,264 + AO356_01255 0.33 -0.1
292,264 + AO356_01255 0.33 -0.9
292,264 + AO356_01255 0.33 +0.2
292,265 - AO356_01255 0.33 +0.5
292,265 - AO356_01255 0.33 +0.7
292,265 - AO356_01255 0.33 -1.6
292,268 + AO356_01255 0.33 +0.6
292,268 + AO356_01255 0.33 -0.9
292,268 + AO356_01255 0.33 -0.1
292,269 - AO356_01255 0.33 -0.7
292,269 - AO356_01255 0.33 -0.1
292,269 - AO356_01255 0.33 +0.1
292,269 - AO356_01255 0.33 +1.1
292,270 + AO356_01255 0.33 +0.3
292,270 + AO356_01255 0.33 -0.8
292,270 + AO356_01255 0.33 -0.5
292,270 + AO356_01255 0.33 -1.4
292,271 - AO356_01255 0.33 -1.6
292,271 - AO356_01255 0.33 -1.3
292,271 - AO356_01255 0.33 -1.4
292,271 - AO356_01255 0.33 -0.6
292,271 - AO356_01255 0.33 -0.1
292,271 - AO356_01255 0.33 -0.6
292,271 - AO356_01255 0.33 -0.0
292,271 - AO356_01255 0.33 +1.7
292,271 - AO356_01255 0.33 -1.1

Or see this region's nucleotide sequence