Strain Fitness in Shewanella loihica PV-4 around Shew_2621

Experiment: Aluminum chloride 1 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntdnaE and Shew_2621 are separated by 172 nucleotidesShew_2621 and lpxB overlap by 1 nucleotides Shew_2620: dnaE - DNA polymerase III subunit alpha (RefSeq), at 3,091,974 to 3,095,447 dnaE Shew_2621: Shew_2621 - ribonuclease H (RefSeq), at 3,095,620 to 3,096,246 _2621 Shew_2622: lpxB - lipid-A-disaccharide synthase (RefSeq), at 3,096,246 to 3,097,394 lpxB Position (kb) 3095 3096 3097Strain fitness (log2 ratio) -1 0 1at 3095.725 kb on - strand, within Shew_2621at 3095.730 kb on - strand, within Shew_2621at 3095.842 kb on - strand, within Shew_2621at 3095.975 kb on + strand, within Shew_2621at 3096.120 kb on - strand, within Shew_2621

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Per-strain Table

Position Strand Gene LocusTag Fraction Aluminum chloride 1 mM
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3,095,725 - Shew_2621 0.17 +0.9
3,095,730 - Shew_2621 0.18 +0.5
3,095,842 - Shew_2621 0.35 +0.2
3,095,975 + Shew_2621 0.57 +0.4
3,096,120 - Shew_2621 0.80 +0.1

Or see this region's nucleotide sequence