Strain Fitness in Shewanella loihica PV-4 around Shew_R0087

Experiment: Aluminum chloride 1 mM

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 nttig and Shew_R0087 are separated by 252 nucleotidesShew_R0087 and Shew_R0088 are separated by 8 nucleotidesShew_R0088 and Shew_R0089 are separated by 63 nucleotidesShew_R0089 and Shew_2510 are separated by 347 nucleotides Shew_2509: tig - trigger factor (RefSeq), at 2,951,564 to 2,952,868 tig Shew_R0087: Shew_R0087 - tRNA-His (RefSeq), at 2,953,121 to 2,953,196 _R0087 Shew_R0088: Shew_R0088 - tRNA-Arg (RefSeq), at 2,953,205 to 2,953,281 _R0088 Shew_R0089: Shew_R0089 - tRNA-Pro (RefSeq), at 2,953,345 to 2,953,421 _R0089 Shew_2510: Shew_2510 - methylenetetrahydrofolate dehydrogenase (NADP(+)) (RefSeq), at 2,953,769 to 2,954,623 _2510 Position (kb) 2953 2954Strain fitness (log2 ratio) -1 0 1at 2952.413 kb on - strand, within tigat 2952.508 kb on + strand, within tigat 2952.840 kb on - strand

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction Aluminum chloride 1 mM
remove
2,952,413 - tig Shew_2509 0.65 +0.6
2,952,508 + tig Shew_2509 0.72 +0.5
2,952,840 - -0.2

Or see this region's nucleotide sequence