Strain Fitness in Dinoroseobacter shibae DFL-12 around Dshi_2952

Experiment: Uridine (N)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDshi_2951 and Dshi_2952 are separated by 6 nucleotidesDshi_2952 and Dshi_2953 overlap by 4 nucleotidesDshi_2953 and Dshi_2954 overlap by 4 nucleotides Dshi_2951: Dshi_2951 - Pyridoxal-5'-phosphate-dependent protein beta subunit (RefSeq), at 3,112,137 to 3,113,279 _2951 Dshi_2952: Dshi_2952 - pantoate--beta-alanine ligase (RefSeq), at 3,113,286 to 3,114,131 _2952 Dshi_2953: Dshi_2953 - ATP phosphoribosyltransferase (RefSeq), at 3,114,128 to 3,114,847 _2953 Dshi_2954: Dshi_2954 - tRNA synthetase class II (G H P and S) (RefSeq), at 3,114,844 to 3,115,950 _2954 Position (kb) 3113 3114 3115Strain fitness (log2 ratio) -1 0 1 2 3at 3112.329 kb on - strand, within Dshi_2951at 3112.360 kb on - strand, within Dshi_2951at 3112.659 kb on + strand, within Dshi_2951at 3112.665 kb on - strand, within Dshi_2951at 3112.884 kb on - strand, within Dshi_2951at 3112.897 kb on + strand, within Dshi_2951at 3113.044 kb on - strand, within Dshi_2951at 3113.062 kb on - strand, within Dshi_2951at 3113.062 kb on - strand, within Dshi_2951at 3113.118 kb on - strand, within Dshi_2951at 3113.120 kb on + strand, within Dshi_2951at 3113.264 kb on + strandat 3113.288 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Uridine (N)
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3,112,329 - Dshi_2951 0.17 -0.6
3,112,360 - Dshi_2951 0.20 -1.2
3,112,659 + Dshi_2951 0.46 -0.5
3,112,665 - Dshi_2951 0.46 +3.3
3,112,884 - Dshi_2951 0.65 +0.3
3,112,897 + Dshi_2951 0.66 -0.4
3,113,044 - Dshi_2951 0.79 -0.1
3,113,062 - Dshi_2951 0.81 -0.7
3,113,062 - Dshi_2951 0.81 -0.4
3,113,118 - Dshi_2951 0.86 -0.8
3,113,120 + Dshi_2951 0.86 -0.1
3,113,264 + -0.8
3,113,288 + -1.2

Or see this region's nucleotide sequence