Strain Fitness in Dinoroseobacter shibae DFL-12 around Dshi_0704

Experiment: Uridine (N)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDshi_0703 and Dshi_0704 are separated by 255 nucleotidesDshi_0704 and Dshi_0705 overlap by 4 nucleotides Dshi_0703: Dshi_0703 - hypothetical protein (RefSeq), at 709,466 to 710,386 _0703 Dshi_0704: Dshi_0704 - DegT/DnrJ/EryC1/StrS aminotransferase (RefSeq), at 710,642 to 711,829 _0704 Dshi_0705: Dshi_0705 - hypothetical protein (RefSeq), at 711,826 to 713,256 _0705 Position (kb) 710 711 712Strain fitness (log2 ratio) -1 0 1 2at 709.685 kb on - strand, within Dshi_0703at 709.882 kb on + strand, within Dshi_0703at 709.882 kb on + strand, within Dshi_0703at 709.890 kb on - strand, within Dshi_0703at 709.890 kb on - strand, within Dshi_0703at 710.012 kb on - strand, within Dshi_0703at 710.019 kb on + strand, within Dshi_0703at 710.019 kb on + strand, within Dshi_0703at 710.027 kb on - strand, within Dshi_0703at 710.027 kb on - strand, within Dshi_0703at 710.051 kb on + strand, within Dshi_0703at 710.077 kb on + strand, within Dshi_0703at 710.078 kb on - strand, within Dshi_0703at 710.080 kb on - strand, within Dshi_0703at 710.085 kb on - strand, within Dshi_0703at 710.170 kb on + strand, within Dshi_0703at 710.172 kb on + strand, within Dshi_0703at 710.172 kb on + strand, within Dshi_0703at 710.196 kb on + strand, within Dshi_0703at 710.221 kb on - strand, within Dshi_0703at 710.264 kb on + strand, within Dshi_0703at 710.268 kb on + strand, within Dshi_0703at 710.272 kb on - strand, within Dshi_0703at 710.277 kb on - strand, within Dshi_0703at 710.293 kb on + strand, within Dshi_0703at 710.296 kb on - strandat 710.306 kb on - strandat 710.313 kb on - strandat 710.360 kb on + strandat 710.363 kb on + strandat 710.369 kb on - strandat 710.371 kb on - strandat 710.371 kb on - strandat 710.458 kb on - strandat 710.492 kb on - strandat 710.504 kb on - strandat 710.504 kb on - strandat 710.527 kb on - strandat 710.545 kb on - strandat 710.588 kb on - strandat 710.706 kb on + strandat 710.728 kb on - strandat 710.914 kb on + strand, within Dshi_0704at 710.923 kb on - strand, within Dshi_0704at 710.923 kb on - strand, within Dshi_0704at 710.966 kb on - strand, within Dshi_0704at 711.091 kb on - strand, within Dshi_0704at 711.107 kb on + strand, within Dshi_0704at 711.153 kb on + strand, within Dshi_0704at 711.164 kb on + strand, within Dshi_0704at 711.169 kb on + strand, within Dshi_0704at 711.257 kb on + strand, within Dshi_0704at 711.279 kb on + strandat 711.289 kb on + strand, within Dshi_0704at 711.294 kb on - strand, within Dshi_0704at 711.392 kb on + strand, within Dshi_0704at 711.423 kb on + strand, within Dshi_0704at 711.487 kb on - strand, within Dshi_0704at 711.523 kb on + strand, within Dshi_0704at 711.547 kb on + strand, within Dshi_0704at 711.557 kb on - strand, within Dshi_0704at 711.740 kb on + strandat 711.740 kb on + strandat 711.740 kb on + strandat 711.757 kb on + strandat 711.819 kb on - strandat 711.919 kb on - strandat 711.975 kb on + strand, within Dshi_0705at 712.018 kb on + strand, within Dshi_0705at 712.202 kb on - strand, within Dshi_0705at 712.210 kb on + strand, within Dshi_0705at 712.213 kb on - strand, within Dshi_0705at 712.617 kb on + strand, within Dshi_0705at 712.632 kb on + strand, within Dshi_0705at 712.705 kb on - strand, within Dshi_0705

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Per-strain Table

Position Strand Gene LocusTag Fraction Uridine (N)
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709,685 - Dshi_0703 0.24 +1.4
709,882 + Dshi_0703 0.45 +0.9
709,882 + Dshi_0703 0.45 +0.7
709,890 - Dshi_0703 0.46 +1.6
709,890 - Dshi_0703 0.46 +1.2
710,012 - Dshi_0703 0.59 +1.0
710,019 + Dshi_0703 0.60 +0.9
710,019 + Dshi_0703 0.60 +1.2
710,027 - Dshi_0703 0.61 +1.3
710,027 - Dshi_0703 0.61 +1.8
710,051 + Dshi_0703 0.64 +1.0
710,077 + Dshi_0703 0.66 +0.5
710,078 - Dshi_0703 0.66 +1.0
710,080 - Dshi_0703 0.67 +0.8
710,085 - Dshi_0703 0.67 +0.8
710,170 + Dshi_0703 0.76 +0.9
710,172 + Dshi_0703 0.77 -0.2
710,172 + Dshi_0703 0.77 +0.8
710,196 + Dshi_0703 0.79 +0.8
710,221 - Dshi_0703 0.82 +1.0
710,264 + Dshi_0703 0.87 +1.3
710,268 + Dshi_0703 0.87 +1.1
710,272 - Dshi_0703 0.88 +2.7
710,277 - Dshi_0703 0.88 +1.5
710,293 + Dshi_0703 0.90 +0.5
710,296 - +0.6
710,306 - +1.6
710,313 - +1.7
710,360 + +1.0
710,363 + +1.2
710,369 - +0.9
710,371 - +0.5
710,371 - -0.1
710,458 - +0.0
710,492 - -1.4
710,504 - -0.6
710,504 - -1.1
710,527 - -0.7
710,545 - -0.1
710,588 - -0.0
710,706 + +1.2
710,728 - +1.3
710,914 + Dshi_0704 0.23 -0.2
710,923 - Dshi_0704 0.24 +0.9
710,923 - Dshi_0704 0.24 +0.6
710,966 - Dshi_0704 0.27 -0.4
711,091 - Dshi_0704 0.38 +1.6
711,107 + Dshi_0704 0.39 +2.1
711,153 + Dshi_0704 0.43 -0.2
711,164 + Dshi_0704 0.44 +2.0
711,169 + Dshi_0704 0.44 +1.5
711,257 + Dshi_0704 0.52 +1.2
711,279 + +2.2
711,289 + Dshi_0704 0.54 +1.3
711,294 - Dshi_0704 0.55 +1.0
711,392 + Dshi_0704 0.63 +1.0
711,423 + Dshi_0704 0.66 +0.7
711,487 - Dshi_0704 0.71 +0.6
711,523 + Dshi_0704 0.74 +1.2
711,547 + Dshi_0704 0.76 +0.8
711,557 - Dshi_0704 0.77 +1.4
711,740 + +1.5
711,740 + +0.8
711,740 + +2.4
711,757 + -0.3
711,819 - +0.8
711,919 - -0.4
711,975 + Dshi_0705 0.10 +1.2
712,018 + Dshi_0705 0.13 +0.8
712,202 - Dshi_0705 0.26 +2.4
712,210 + Dshi_0705 0.27 +0.8
712,213 - Dshi_0705 0.27 +0.9
712,617 + Dshi_0705 0.55 +1.1
712,632 + Dshi_0705 0.56 +0.5
712,705 - Dshi_0705 0.61 +0.4

Or see this region's nucleotide sequence