Strain Fitness in Methanococcus maripaludis S2 around MMP_RS03565

Experiment: Formate McCas no stress control 2

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntMMP_RS03560 and MMP_RS03565 are separated by 90 nucleotidesMMP_RS03565 and MMP_RS03570 are separated by 36 nucleotides MMP_RS03560: MMP_RS03560 - Na+/H+ antiporter NhaC family protein, at 666,725 to 668,302 _RS03560 MMP_RS03565: MMP_RS03565 - uracil phosphoribosyltransferase, at 668,393 to 669,088 _RS03565 MMP_RS03570: MMP_RS03570 - uracil-xanthine permease family protein, at 669,125 to 670,366 _RS03570 Position (kb) 668 669 670Strain fitness (log2 ratio) -1 0 1at 667.466 kb on - strand, within MMP_RS03560at 667.631 kb on + strand, within MMP_RS03560at 667.662 kb on - strand, within MMP_RS03560at 667.662 kb on - strand, within MMP_RS03560at 667.663 kb on + strand, within MMP_RS03560at 667.663 kb on + strand, within MMP_RS03560at 667.663 kb on + strand, within MMP_RS03560at 667.666 kb on - strand, within MMP_RS03560at 667.666 kb on - strand, within MMP_RS03560at 667.666 kb on - strand, within MMP_RS03560at 667.666 kb on - strand, within MMP_RS03560at 667.667 kb on + strand, within MMP_RS03560at 667.667 kb on + strand, within MMP_RS03560at 667.671 kb on - strand, within MMP_RS03560at 667.671 kb on - strand, within MMP_RS03560at 667.672 kb on + strand, within MMP_RS03560at 667.672 kb on + strand, within MMP_RS03560at 667.787 kb on - strand, within MMP_RS03560at 667.796 kb on - strand, within MMP_RS03560at 667.823 kb on + strand, within MMP_RS03560at 667.824 kb on - strand, within MMP_RS03560at 667.824 kb on - strand, within MMP_RS03560at 667.824 kb on - strand, within MMP_RS03560at 667.825 kb on + strand, within MMP_RS03560at 668.057 kb on - strand, within MMP_RS03560at 668.061 kb on + strand, within MMP_RS03560at 668.121 kb on + strand, within MMP_RS03560at 668.144 kb on + strand, within MMP_RS03560at 668.147 kb on - strandat 668.152 kb on - strandat 668.173 kb on - strandat 668.193 kb on + strandat 668.193 kb on + strandat 668.229 kb on - strandat 668.285 kb on - strandat 668.286 kb on + strandat 668.289 kb on + strandat 668.302 kb on - strandat 668.302 kb on - strandat 668.307 kb on + strandat 668.307 kb on + strandat 668.308 kb on - strandat 668.309 kb on + strandat 668.329 kb on + strandat 668.354 kb on + strandat 668.354 kb on + strandat 668.356 kb on + strandat 668.386 kb on - strandat 668.386 kb on - strandat 668.386 kb on - strandat 668.386 kb on - strandat 668.386 kb on - strandat 668.480 kb on - strand, within MMP_RS03565at 668.480 kb on - strand, within MMP_RS03565at 668.484 kb on - strand, within MMP_RS03565at 668.494 kb on - strand, within MMP_RS03565at 668.591 kb on - strand, within MMP_RS03565at 668.648 kb on + strand, within MMP_RS03565at 668.719 kb on + strand, within MMP_RS03565at 668.729 kb on - strand, within MMP_RS03565at 668.730 kb on + strand, within MMP_RS03565at 668.734 kb on - strand, within MMP_RS03565at 668.842 kb on - strand, within MMP_RS03565at 668.845 kb on - strand, within MMP_RS03565at 668.860 kb on - strand, within MMP_RS03565at 669.032 kb on - strandat 669.084 kb on + strandat 669.088 kb on - strandat 669.114 kb on + strandat 669.119 kb on + strandat 669.279 kb on + strand, within MMP_RS03570at 669.310 kb on - strand, within MMP_RS03570at 669.364 kb on - strand, within MMP_RS03570at 669.416 kb on + strand, within MMP_RS03570at 669.443 kb on - strand, within MMP_RS03570at 669.687 kb on + strand, within MMP_RS03570at 669.798 kb on + strand, within MMP_RS03570at 669.825 kb on + strand, within MMP_RS03570at 669.867 kb on + strand, within MMP_RS03570at 669.883 kb on - strand, within MMP_RS03570at 669.884 kb on + strand, within MMP_RS03570at 669.906 kb on + strand, within MMP_RS03570at 669.914 kb on - strand, within MMP_RS03570at 669.931 kb on - strand, within MMP_RS03570at 669.945 kb on - strand, within MMP_RS03570at 670.069 kb on - strand, within MMP_RS03570

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Per-strain Table

Position Strand Gene LocusTag Fraction Formate McCas no stress control 2
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667,466 - MMP_RS03560 0.47 -0.4
667,631 + MMP_RS03560 0.57 -0.7
667,662 - MMP_RS03560 0.59 -0.4
667,662 - MMP_RS03560 0.59 -1.0
667,663 + MMP_RS03560 0.59 -0.2
667,663 + MMP_RS03560 0.59 -0.6
667,663 + MMP_RS03560 0.59 -0.4
667,666 - MMP_RS03560 0.60 -0.2
667,666 - MMP_RS03560 0.60 +0.2
667,666 - MMP_RS03560 0.60 -0.7
667,666 - MMP_RS03560 0.60 -0.5
667,667 + MMP_RS03560 0.60 -0.2
667,667 + MMP_RS03560 0.60 -0.2
667,671 - MMP_RS03560 0.60 -1.0
667,671 - MMP_RS03560 0.60 +0.5
667,672 + MMP_RS03560 0.60 -0.5
667,672 + MMP_RS03560 0.60 -0.2
667,787 - MMP_RS03560 0.67 -0.2
667,796 - MMP_RS03560 0.68 -0.3
667,823 + MMP_RS03560 0.70 -1.0
667,824 - MMP_RS03560 0.70 -0.3
667,824 - MMP_RS03560 0.70 -1.0
667,824 - MMP_RS03560 0.70 -0.9
667,825 + MMP_RS03560 0.70 +0.6
668,057 - MMP_RS03560 0.84 -0.1
668,061 + MMP_RS03560 0.85 -0.1
668,121 + MMP_RS03560 0.88 -0.3
668,144 + MMP_RS03560 0.90 +0.2
668,147 - -0.3
668,152 - -0.2
668,173 - +0.1
668,193 + -0.1
668,193 + -0.1
668,229 - +0.0
668,285 - -0.2
668,286 + -0.2
668,289 + +0.2
668,302 - +0.1
668,302 - -0.2
668,307 + -0.1
668,307 + +0.4
668,308 - -0.4
668,309 + -0.1
668,329 + +0.1
668,354 + -0.0
668,354 + -0.2
668,356 + -0.4
668,386 - +0.0
668,386 - -0.3
668,386 - -0.0
668,386 - -0.3
668,386 - -0.1
668,480 - MMP_RS03565 0.12 +0.0
668,480 - MMP_RS03565 0.12 -0.3
668,484 - MMP_RS03565 0.13 +0.3
668,494 - MMP_RS03565 0.15 +0.3
668,591 - MMP_RS03565 0.28 +0.2
668,648 + MMP_RS03565 0.37 -0.1
668,719 + MMP_RS03565 0.47 -0.1
668,729 - MMP_RS03565 0.48 -0.1
668,730 + MMP_RS03565 0.48 -0.0
668,734 - MMP_RS03565 0.49 -0.2
668,842 - MMP_RS03565 0.65 +0.3
668,845 - MMP_RS03565 0.65 -0.2
668,860 - MMP_RS03565 0.67 -0.0
669,032 - -0.2
669,084 + -0.2
669,088 - +0.0
669,114 + +0.7
669,119 + +0.7
669,279 + MMP_RS03570 0.12 +0.1
669,310 - MMP_RS03570 0.15 +1.1
669,364 - MMP_RS03570 0.19 -0.4
669,416 + MMP_RS03570 0.23 +0.3
669,443 - MMP_RS03570 0.26 -0.4
669,687 + MMP_RS03570 0.45 +0.1
669,798 + MMP_RS03570 0.54 +0.3
669,825 + MMP_RS03570 0.56 -0.0
669,867 + MMP_RS03570 0.60 -0.2
669,883 - MMP_RS03570 0.61 -0.0
669,884 + MMP_RS03570 0.61 -0.3
669,906 + MMP_RS03570 0.63 +1.5
669,914 - MMP_RS03570 0.64 +0.1
669,931 - MMP_RS03570 0.65 +0.2
669,945 - MMP_RS03570 0.66 -0.0
670,069 - MMP_RS03570 0.76 -0.1

Or see this region's nucleotide sequence