Experiment: Formate McCas no stress control 2
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MMP_RS02620 and MMP_RS02625 overlap by 7 nucleotides MMP_RS02625 and MMP_RS02630 are separated by 250 nucleotides
MMP_RS02620: MMP_RS02620 - DEAD/DEAH box helicase, at 496,024 to 498,303
_RS02620
MMP_RS02625: MMP_RS02625 - ribonuclease H-like domain-containing protein, at 498,297 to 499,391
_RS02625
MMP_RS02630: MMP_RS02630 - rubredoxin, at 499,642 to 501,126
_RS02630
Position (kb) 498
499
500 Strain fitness (log2 ratio) -1
0
1 at 497.411 kb on + strand, within MMP_RS02620 at 497.511 kb on - strand, within MMP_RS02620 at 497.512 kb on + strand, within MMP_RS02620 at 497.584 kb on - strand, within MMP_RS02620 at 497.633 kb on + strand, within MMP_RS02620 at 497.654 kb on - strand, within MMP_RS02620 at 497.683 kb on - strand, within MMP_RS02620 at 497.697 kb on - strand, within MMP_RS02620 at 497.720 kb on - strand, within MMP_RS02620 at 497.720 kb on - strand, within MMP_RS02620 at 497.721 kb on + strand, within MMP_RS02620 at 497.741 kb on + strand, within MMP_RS02620 at 497.792 kb on + strand, within MMP_RS02620 at 497.863 kb on + strand, within MMP_RS02620 at 497.883 kb on + strand, within MMP_RS02620 at 498.089 kb on + strand at 498.119 kb on - strand at 498.167 kb on + strand at 498.231 kb on - strand at 498.320 kb on - strand at 498.339 kb on - strand at 498.348 kb on - strand at 498.348 kb on - strand at 498.348 kb on - strand at 498.363 kb on - strand at 498.403 kb on - strand at 498.404 kb on + strand at 498.465 kb on - strand, within MMP_RS02625 at 498.480 kb on + strand, within MMP_RS02625 at 498.580 kb on - strand, within MMP_RS02625 at 498.603 kb on + strand, within MMP_RS02625 at 498.612 kb on + strand, within MMP_RS02625 at 498.810 kb on - strand, within MMP_RS02625 at 498.822 kb on - strand, within MMP_RS02625 at 498.884 kb on - strand, within MMP_RS02625 at 499.068 kb on - strand, within MMP_RS02625 at 499.124 kb on + strand, within MMP_RS02625 at 499.165 kb on - strand, within MMP_RS02625 at 499.173 kb on - strand, within MMP_RS02625 at 499.371 kb on - strand at 499.412 kb on - strand at 499.413 kb on + strand at 499.444 kb on - strand at 499.475 kb on + strand at 499.513 kb on + strand at 499.561 kb on - strand at 499.562 kb on + strand at 499.563 kb on - strand at 499.563 kb on - strand at 499.564 kb on + strand at 499.567 kb on - strand at 499.574 kb on - strand at 499.575 kb on + strand at 499.578 kb on + strand at 499.589 kb on + strand at 500.097 kb on - strand, within MMP_RS02630 at 500.289 kb on - strand, within MMP_RS02630 at 500.289 kb on - strand, within MMP_RS02630 at 500.294 kb on + strand, within MMP_RS02630 at 500.300 kb on - strand, within MMP_RS02630 at 500.305 kb on - strand, within MMP_RS02630 at 500.305 kb on - strand, within MMP_RS02630 at 500.306 kb on + strand, within MMP_RS02630 at 500.310 kb on + strand, within MMP_RS02630
Per-strain Table
Position Strand Gene LocusTag Fraction Formate McCas no stress control 2 remove 497,411 + MMP_RS02620 0.61 +0.5 497,511 - MMP_RS02620 0.65 -0.0 497,512 + MMP_RS02620 0.65 -0.2 497,584 - MMP_RS02620 0.68 +0.2 497,633 + MMP_RS02620 0.71 -0.3 497,654 - MMP_RS02620 0.71 -0.2 497,683 - MMP_RS02620 0.73 -0.2 497,697 - MMP_RS02620 0.73 +0.1 497,720 - MMP_RS02620 0.74 +0.3 497,720 - MMP_RS02620 0.74 -0.2 497,721 + MMP_RS02620 0.74 -0.0 497,741 + MMP_RS02620 0.75 +1.3 497,792 + MMP_RS02620 0.78 -0.2 497,863 + MMP_RS02620 0.81 +0.1 497,883 + MMP_RS02620 0.82 -0.5 498,089 + +0.7 498,119 - +0.1 498,167 + -0.0 498,231 - +0.1 498,320 - +0.0 498,339 - +0.2 498,348 - -0.4 498,348 - -0.2 498,348 - +0.5 498,363 - -0.0 498,403 - -0.3 498,404 + +0.2 498,465 - MMP_RS02625 0.15 +0.0 498,480 + MMP_RS02625 0.17 +0.3 498,580 - MMP_RS02625 0.26 +0.1 498,603 + MMP_RS02625 0.28 -0.1 498,612 + MMP_RS02625 0.29 +0.2 498,810 - MMP_RS02625 0.47 +0.1 498,822 - MMP_RS02625 0.48 -0.3 498,884 - MMP_RS02625 0.54 +0.2 499,068 - MMP_RS02625 0.70 -0.2 499,124 + MMP_RS02625 0.76 +0.1 499,165 - MMP_RS02625 0.79 +0.3 499,173 - MMP_RS02625 0.80 +0.1 499,371 - -0.3 499,412 - -0.1 499,413 + -0.4 499,444 - -0.4 499,475 + -0.0 499,513 + +0.9 499,561 - +0.1 499,562 + -0.5 499,563 - -0.5 499,563 - +0.8 499,564 + +0.2 499,567 - +0.1 499,574 - +0.3 499,575 + -0.1 499,578 + +0.2 499,589 + +0.9 500,097 - MMP_RS02630 0.31 -0.3 500,289 - MMP_RS02630 0.44 +0.0 500,289 - MMP_RS02630 0.44 -0.3 500,294 + MMP_RS02630 0.44 -0.1 500,300 - MMP_RS02630 0.44 +0.2 500,305 - MMP_RS02630 0.45 +0.0 500,305 - MMP_RS02630 0.45 -0.2 500,306 + MMP_RS02630 0.45 +0.1 500,310 + MMP_RS02630 0.45 +0.3
Or see this region's nucleotide sequence