Experiment: Formate McCas no stress control 2
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MMP_RS02215 and MMP_RS02220 are separated by 207 nucleotides MMP_RS02220 and MMP_RS02225 are separated by 19 nucleotides MMP_RS02225 and MMP_RS02230 are separated by 142 nucleotides
MMP_RS02215: MMP_RS02215 - ECF transporter S component, at 417,866 to 418,462
_RS02215
MMP_RS02220: MMP_RS02220 - 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino]imidazole-4-carboxamide isomerase, at 418,670 to 419,395
_RS02220
MMP_RS02225: MMP_RS02225 - carbohydrate kinase family protein, at 419,415 to 420,323
_RS02225
MMP_RS02230: MMP_RS02230 - sodium-dependent transporter, at 420,466 to 421,977
_RS02230
Position (kb) 419
420
421 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1 at 418.542 kb on - strand at 418.542 kb on - strand at 418.582 kb on - strand at 418.582 kb on - strand at 418.582 kb on - strand at 418.582 kb on - strand at 418.582 kb on - strand at 418.586 kb on - strand at 418.586 kb on - strand at 418.625 kb on - strand at 418.674 kb on - strand at 419.176 kb on + strand at 419.325 kb on - strand at 419.463 kb on - strand at 419.594 kb on + strand, within MMP_RS02225 at 419.640 kb on - strand, within MMP_RS02225 at 419.812 kb on - strand, within MMP_RS02225 at 419.813 kb on + strand, within MMP_RS02225 at 419.914 kb on - strand, within MMP_RS02225 at 419.967 kb on + strand, within MMP_RS02225 at 420.047 kb on + strand, within MMP_RS02225 at 420.080 kb on + strand, within MMP_RS02225 at 420.081 kb on - strand, within MMP_RS02225 at 420.352 kb on - strand at 420.408 kb on + strand at 420.414 kb on + strand at 420.414 kb on + strand at 420.750 kb on + strand, within MMP_RS02230 at 420.792 kb on + strand, within MMP_RS02230 at 420.793 kb on - strand, within MMP_RS02230 at 420.855 kb on - strand, within MMP_RS02230 at 420.898 kb on + strand, within MMP_RS02230 at 420.930 kb on + strand, within MMP_RS02230 at 420.943 kb on - strand, within MMP_RS02230 at 420.943 kb on - strand, within MMP_RS02230 at 420.943 kb on - strand, within MMP_RS02230 at 421.078 kb on - strand, within MMP_RS02230 at 421.107 kb on + strand, within MMP_RS02230 at 421.116 kb on - strand, within MMP_RS02230
Per-strain Table
Position Strand Gene LocusTag Fraction Formate McCas no stress control 2 remove 418,542 - -0.1 418,542 - +0.7 418,582 - +0.3 418,582 - +0.4 418,582 - -0.6 418,582 - -0.6 418,582 - -0.2 418,586 - -4.3 418,586 - -1.0 418,625 - -1.9 418,674 - -1.7 419,176 + -1.6 419,325 - -1.6 419,463 - +0.3 419,594 + MMP_RS02225 0.20 +0.0 419,640 - MMP_RS02225 0.25 -0.1 419,812 - MMP_RS02225 0.44 -0.1 419,813 + MMP_RS02225 0.44 -0.1 419,914 - MMP_RS02225 0.55 +0.7 419,967 + MMP_RS02225 0.61 -0.1 420,047 + MMP_RS02225 0.70 +0.4 420,080 + MMP_RS02225 0.73 -0.2 420,081 - MMP_RS02225 0.73 +0.3 420,352 - -0.5 420,408 + -0.6 420,414 + +0.1 420,414 + -0.7 420,750 + MMP_RS02230 0.19 -0.2 420,792 + MMP_RS02230 0.22 +0.2 420,793 - MMP_RS02230 0.22 -0.2 420,855 - MMP_RS02230 0.26 -0.6 420,898 + MMP_RS02230 0.29 +0.7 420,930 + MMP_RS02230 0.31 -0.1 420,943 - MMP_RS02230 0.32 -0.3 420,943 - MMP_RS02230 0.32 -0.1 420,943 - MMP_RS02230 0.32 -0.6 421,078 - MMP_RS02230 0.40 -0.3 421,107 + MMP_RS02230 0.42 -0.4 421,116 - MMP_RS02230 0.43 -0.3
Or see this region's nucleotide sequence