Strain Fitness in Methanococcus maripaludis S2 around MMP_RS00900

Experiment: Formate McCas no stress control 2

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntMMP_RS00890 and MMP_RS00895 are separated by 0 nucleotidesMMP_RS00895 and MMP_RS00900 are separated by 16 nucleotidesMMP_RS00900 and MMP_RS00905 are separated by 71 nucleotides MMP_RS00890: MMP_RS00890 - DNA-binding protein, at 167,941 to 168,300 _RS00890 MMP_RS00895: MMP_RS00895 - hypothetical protein, at 168,301 to 168,900 _RS00895 MMP_RS00900: MMP_RS00900 - 50S ribosomal protein L39e, at 168,917 to 169,072 _RS00900 MMP_RS00905: MMP_RS00905 - phenylacetate--CoA ligase, at 169,144 to 170,445 _RS00905 Position (kb) 168 169 170Strain fitness (log2 ratio) -3 -2 -1 0 1at 168.288 kb on + strandat 168.527 kb on - strand, within MMP_RS00895at 168.740 kb on - strand, within MMP_RS00895at 168.740 kb on - strand, within MMP_RS00895at 168.741 kb on + strand, within MMP_RS00895at 168.752 kb on + strand, within MMP_RS00895at 168.758 kb on - strand, within MMP_RS00895at 168.988 kb on - strand, within MMP_RS00900at 169.021 kb on - strand, within MMP_RS00900at 169.560 kb on - strand, within MMP_RS00905at 169.651 kb on - strand, within MMP_RS00905at 170.068 kb on + strand, within MMP_RS00905

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction Formate McCas no stress control 2
remove
168,288 + -2.2
168,527 - MMP_RS00895 0.38 -0.6
168,740 - MMP_RS00895 0.73 -2.8
168,740 - MMP_RS00895 0.73 -2.9
168,741 + MMP_RS00895 0.73 -2.0
168,752 + MMP_RS00895 0.75 -2.0
168,758 - MMP_RS00895 0.76 -0.3
168,988 - MMP_RS00900 0.46 -0.4
169,021 - MMP_RS00900 0.67 -0.2
169,560 - MMP_RS00905 0.32 -0.3
169,651 - MMP_RS00905 0.39 -0.4
170,068 + MMP_RS00905 0.71 -0.3

Or see this region's nucleotide sequence