Experiment: Survival; Treatment=UGA synthetic gw pH4.4; TreatmentDuration=0.5hrs; Outgrowth=LBkan50
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt IAI47_21245 and IAI47_21250 are separated by 104 nucleotides IAI47_21250 and IAI47_21255 are separated by 3 nucleotides IAI47_21255 and IAI47_21260 are separated by 180 nucleotides IAI47_21260 and IAI47_21265 are separated by 112 nucleotides
IAI47_21245: IAI47_21245 - alcohol dehydrogenase catalytic domain-containing protein, at 506,194 to 507,273
_21245
IAI47_21250: IAI47_21250 - helix-turn-helix domain-containing protein, at 507,378 to 508,148
_21250
IAI47_21255: IAI47_21255 - TetR/AcrR family transcriptional regulator, at 508,152 to 508,721
_21255
IAI47_21260: IAI47_21260 - glutathione S-transferase, at 508,902 to 509,564
_21260
IAI47_21265: IAI47_21265 - ATP-binding cassette domain-containing protein, at 509,677 to 510,480
_21265
Position (kb) 508
509 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3
4
5 at 507.259 kb on + strand at 507.260 kb on - strand at 507.260 kb on - strand at 507.273 kb on + strand at 507.273 kb on + strand at 507.273 kb on + strand at 507.279 kb on + strand at 507.279 kb on + strand at 507.279 kb on + strand at 507.279 kb on + strand at 507.279 kb on + strand at 507.279 kb on + strand at 507.279 kb on + strand at 507.279 kb on + strand at 507.279 kb on + strand at 507.279 kb on + strand at 507.280 kb on - strand at 507.280 kb on - strand at 507.280 kb on - strand at 507.280 kb on - strand at 507.280 kb on - strand at 507.280 kb on - strand at 507.280 kb on - strand at 507.280 kb on - strand at 507.296 kb on - strand at 507.308 kb on + strand at 507.308 kb on + strand at 507.309 kb on - strand at 507.310 kb on + strand at 507.310 kb on + strand at 507.310 kb on + strand at 507.310 kb on + strand at 507.311 kb on - strand at 507.340 kb on + strand at 507.341 kb on - strand at 507.346 kb on + strand at 507.346 kb on + strand at 507.347 kb on - strand at 507.347 kb on - strand at 507.347 kb on - strand at 507.354 kb on + strand at 507.354 kb on + strand at 507.354 kb on + strand at 507.355 kb on - strand at 507.355 kb on - strand at 507.355 kb on - strand at 507.355 kb on - strand at 507.356 kb on + strand at 507.356 kb on + strand at 507.356 kb on + strand at 507.356 kb on + strand at 507.356 kb on + strand at 507.356 kb on + strand at 507.357 kb on - strand at 507.357 kb on - strand at 507.357 kb on - strand at 507.372 kb on + strand at 507.372 kb on + strand at 507.397 kb on + strand at 507.398 kb on - strand at 507.398 kb on - strand at 507.398 kb on - strand at 507.398 kb on - strand at 507.398 kb on - strand at 507.398 kb on - strand at 507.451 kb on + strand at 507.451 kb on + strand at 507.452 kb on - strand at 507.452 kb on - strand at 507.452 kb on - strand at 507.452 kb on - strand at 507.521 kb on + strand, within IAI47_21250 at 507.522 kb on - strand, within IAI47_21250 at 507.531 kb on + strand, within IAI47_21250 at 507.532 kb on - strand, within IAI47_21250 at 507.534 kb on - strand, within IAI47_21250 at 507.611 kb on + strand, within IAI47_21250 at 507.611 kb on + strand, within IAI47_21250 at 507.612 kb on - strand, within IAI47_21250 at 507.612 kb on - strand, within IAI47_21250 at 507.641 kb on + strand, within IAI47_21250 at 507.641 kb on + strand, within IAI47_21250 at 507.691 kb on + strand, within IAI47_21250 at 507.758 kb on - strand, within IAI47_21250 at 507.803 kb on - strand, within IAI47_21250 at 507.881 kb on + strand, within IAI47_21250 at 507.881 kb on + strand, within IAI47_21250 at 507.882 kb on - strand, within IAI47_21250 at 507.921 kb on + strand, within IAI47_21250 at 507.922 kb on - strand, within IAI47_21250 at 507.922 kb on - strand, within IAI47_21250 at 508.018 kb on + strand, within IAI47_21250 at 508.019 kb on - strand, within IAI47_21250 at 508.019 kb on - strand, within IAI47_21250 at 508.019 kb on - strand, within IAI47_21250 at 508.083 kb on + strand at 508.083 kb on + strand at 508.131 kb on + strand at 508.131 kb on + strand at 508.131 kb on + strand at 508.132 kb on - strand at 508.132 kb on - strand at 508.146 kb on + strand at 508.146 kb on + strand at 508.146 kb on + strand at 508.147 kb on - strand at 508.186 kb on + strand at 508.186 kb on + strand at 508.186 kb on + strand at 508.187 kb on - strand at 508.187 kb on - strand at 508.187 kb on - strand at 508.187 kb on - strand at 508.187 kb on - strand at 508.193 kb on + strand at 508.193 kb on + strand at 508.194 kb on - strand at 508.194 kb on - strand at 508.214 kb on + strand, within IAI47_21255 at 508.215 kb on - strand, within IAI47_21255 at 508.217 kb on + strand, within IAI47_21255 at 508.217 kb on + strand, within IAI47_21255 at 508.218 kb on - strand, within IAI47_21255 at 508.218 kb on - strand, within IAI47_21255 at 508.239 kb on + strand, within IAI47_21255 at 508.264 kb on + strand, within IAI47_21255 at 508.299 kb on - strand, within IAI47_21255 at 508.299 kb on - strand, within IAI47_21255 at 508.302 kb on - strand, within IAI47_21255 at 508.302 kb on - strand, within IAI47_21255 at 508.320 kb on - strand, within IAI47_21255 at 508.399 kb on + strand, within IAI47_21255 at 508.400 kb on - strand, within IAI47_21255 at 508.412 kb on + strand, within IAI47_21255 at 508.413 kb on - strand, within IAI47_21255 at 508.455 kb on - strand, within IAI47_21255 at 508.521 kb on + strand, within IAI47_21255 at 508.546 kb on + strand, within IAI47_21255 at 508.546 kb on + strand, within IAI47_21255 at 508.546 kb on + strand, within IAI47_21255 at 508.547 kb on - strand, within IAI47_21255 at 508.597 kb on + strand, within IAI47_21255 at 508.597 kb on + strand, within IAI47_21255 at 508.597 kb on + strand, within IAI47_21255 at 508.597 kb on + strand, within IAI47_21255 at 508.598 kb on - strand, within IAI47_21255 at 508.598 kb on - strand, within IAI47_21255 at 508.598 kb on - strand, within IAI47_21255 at 508.601 kb on + strand, within IAI47_21255 at 508.602 kb on - strand at 508.613 kb on + strand, within IAI47_21255 at 508.656 kb on - strand, within IAI47_21255 at 508.656 kb on - strand, within IAI47_21255 at 508.657 kb on + strand, within IAI47_21255 at 508.657 kb on + strand, within IAI47_21255 at 508.658 kb on - strand, within IAI47_21255 at 508.658 kb on - strand, within IAI47_21255 at 508.697 kb on + strand at 508.697 kb on + strand at 508.698 kb on - strand at 508.737 kb on - strand at 508.756 kb on - strand at 508.756 kb on - strand at 508.758 kb on - strand at 508.804 kb on + strand at 508.853 kb on - strand at 508.865 kb on + strand at 508.865 kb on + strand at 508.866 kb on - strand at 508.866 kb on - strand at 508.866 kb on - strand at 508.866 kb on - strand at 508.911 kb on + strand at 508.911 kb on + strand at 508.912 kb on - strand at 508.912 kb on - strand at 508.920 kb on + strand at 508.920 kb on + strand at 508.920 kb on + strand at 508.920 kb on + strand at 508.921 kb on - strand at 508.921 kb on - strand at 508.921 kb on - strand at 508.921 kb on - strand at 508.921 kb on - strand at 508.921 kb on - strand at 508.932 kb on + strand at 509.049 kb on + strand, within IAI47_21260 at 509.050 kb on - strand, within IAI47_21260 at 509.068 kb on + strand, within IAI47_21260 at 509.069 kb on - strand, within IAI47_21260 at 509.071 kb on + strand, within IAI47_21260 at 509.072 kb on - strand, within IAI47_21260 at 509.072 kb on - strand, within IAI47_21260 at 509.121 kb on + strand, within IAI47_21260 at 509.122 kb on - strand, within IAI47_21260 at 509.189 kb on + strand, within IAI47_21260 at 509.189 kb on + strand, within IAI47_21260 at 509.189 kb on + strand, within IAI47_21260 at 509.189 kb on + strand, within IAI47_21260 at 509.189 kb on + strand, within IAI47_21260 at 509.189 kb on + strand, within IAI47_21260 at 509.189 kb on + strand, within IAI47_21260 at 509.190 kb on - strand, within IAI47_21260 at 509.190 kb on - strand, within IAI47_21260 at 509.190 kb on - strand, within IAI47_21260 at 509.190 kb on - strand, within IAI47_21260 at 509.190 kb on - strand, within IAI47_21260 at 509.190 kb on - strand, within IAI47_21260 at 509.190 kb on - strand, within IAI47_21260 at 509.238 kb on + strand, within IAI47_21260 at 509.238 kb on + strand, within IAI47_21260 at 509.239 kb on - strand, within IAI47_21260 at 509.263 kb on + strand, within IAI47_21260 at 509.264 kb on - strand, within IAI47_21260 at 509.283 kb on + strand, within IAI47_21260 at 509.283 kb on + strand, within IAI47_21260 at 509.284 kb on - strand, within IAI47_21260 at 509.340 kb on + strand, within IAI47_21260 at 509.341 kb on - strand, within IAI47_21260 at 509.356 kb on + strand, within IAI47_21260 at 509.357 kb on - strand, within IAI47_21260 at 509.370 kb on + strand, within IAI47_21260 at 509.370 kb on + strand, within IAI47_21260 at 509.370 kb on + strand, within IAI47_21260 at 509.370 kb on + strand, within IAI47_21260 at 509.370 kb on + strand, within IAI47_21260 at 509.370 kb on + strand, within IAI47_21260 at 509.370 kb on + strand, within IAI47_21260 at 509.370 kb on + strand, within IAI47_21260 at 509.371 kb on - strand, within IAI47_21260 at 509.371 kb on - strand, within IAI47_21260 at 509.371 kb on - strand, within IAI47_21260 at 509.384 kb on + strand, within IAI47_21260 at 509.384 kb on + strand, within IAI47_21260 at 509.384 kb on + strand, within IAI47_21260 at 509.384 kb on + strand, within IAI47_21260 at 509.384 kb on + strand, within IAI47_21260 at 509.385 kb on - strand, within IAI47_21260 at 509.385 kb on - strand, within IAI47_21260 at 509.385 kb on - strand, within IAI47_21260 at 509.385 kb on - strand, within IAI47_21260 at 509.390 kb on + strand, within IAI47_21260 at 509.390 kb on + strand, within IAI47_21260 at 509.391 kb on - strand, within IAI47_21260 at 509.391 kb on - strand, within IAI47_21260 at 509.391 kb on - strand, within IAI47_21260 at 509.410 kb on + strand, within IAI47_21260 at 509.411 kb on - strand, within IAI47_21260 at 509.411 kb on - strand, within IAI47_21260 at 509.465 kb on + strand, within IAI47_21260 at 509.465 kb on + strand, within IAI47_21260 at 509.465 kb on + strand, within IAI47_21260 at 509.466 kb on - strand, within IAI47_21260 at 509.466 kb on - strand, within IAI47_21260 at 509.466 kb on - strand, within IAI47_21260 at 509.484 kb on + strand, within IAI47_21260 at 509.511 kb on + strand at 509.511 kb on + strand at 509.512 kb on - strand at 509.562 kb on + strand at 509.563 kb on - strand at 509.573 kb on + strand at 509.574 kb on - strand at 509.581 kb on + strand at 509.581 kb on + strand at 509.582 kb on - strand at 509.582 kb on - strand at 509.582 kb on - strand at 509.651 kb on + strand at 509.712 kb on + strand at 509.712 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction Survival; Treatment=UGA synthetic gw pH4.4; TreatmentDuration=0.5hrs; Outgrowth=LBkan50 remove 507,259 + +2.5 507,260 - -1.1 507,260 - +0.9 507,273 + -0.0 507,273 + +0.4 507,273 + -1.4 507,279 + +1.0 507,279 + +0.2 507,279 + +1.3 507,279 + +1.7 507,279 + +1.1 507,279 + +0.6 507,279 + -0.1 507,279 + +0.2 507,279 + +2.7 507,279 + -0.7 507,280 - -1.3 507,280 - +0.9 507,280 - -0.7 507,280 - +0.6 507,280 - -1.4 507,280 - -1.1 507,280 - -1.6 507,280 - +1.9 507,296 - -0.2 507,308 + +0.1 507,308 + +0.2 507,309 - -2.3 507,310 + +1.3 507,310 + -2.7 507,310 + -0.0 507,310 + -1.5 507,311 - +1.1 507,340 + +2.9 507,341 - +0.6 507,346 + -2.6 507,346 + +2.2 507,347 - -2.6 507,347 - +0.8 507,347 - -0.8 507,354 + +2.7 507,354 + +1.2 507,354 + -1.7 507,355 - -0.4 507,355 - +0.9 507,355 - +0.6 507,355 - +0.8 507,356 + -1.8 507,356 + -2.3 507,356 + +1.3 507,356 + -1.8 507,356 + -0.8 507,356 + -2.0 507,357 - +0.9 507,357 - +0.8 507,357 - -0.1 507,372 + +0.5 507,372 + +0.4 507,397 + -0.1 507,398 - -2.6 507,398 - -0.1 507,398 - +2.5 507,398 - -2.3 507,398 - -0.5 507,398 - -0.8 507,451 + -1.1 507,451 + +0.5 507,452 - -0.5 507,452 - +1.5 507,452 - -0.1 507,452 - +1.1 507,521 + IAI47_21250 0.19 +0.5 507,522 - IAI47_21250 0.19 +1.5 507,531 + IAI47_21250 0.20 +0.6 507,532 - IAI47_21250 0.20 +0.1 507,534 - IAI47_21250 0.20 +1.2 507,611 + IAI47_21250 0.30 +0.6 507,611 + IAI47_21250 0.30 +1.5 507,612 - IAI47_21250 0.30 +0.2 507,612 - IAI47_21250 0.30 +0.8 507,641 + IAI47_21250 0.34 -0.1 507,641 + IAI47_21250 0.34 +1.0 507,691 + IAI47_21250 0.41 -2.0 507,758 - IAI47_21250 0.49 +0.2 507,803 - IAI47_21250 0.55 -0.5 507,881 + IAI47_21250 0.65 -0.5 507,881 + IAI47_21250 0.65 -1.7 507,882 - IAI47_21250 0.65 +1.7 507,921 + IAI47_21250 0.70 +1.1 507,922 - IAI47_21250 0.71 +3.1 507,922 - IAI47_21250 0.71 -0.8 508,018 + IAI47_21250 0.83 +0.7 508,019 - IAI47_21250 0.83 -1.3 508,019 - IAI47_21250 0.83 -1.3 508,019 - IAI47_21250 0.83 +0.0 508,083 + -0.8 508,083 + +0.3 508,131 + -0.1 508,131 + -1.7 508,131 + -0.9 508,132 - -2.0 508,132 - +1.8 508,146 + +0.7 508,146 + +3.3 508,146 + -2.0 508,147 - +0.6 508,186 + +0.9 508,186 + +0.8 508,186 + -0.6 508,187 - -0.8 508,187 - +0.9 508,187 - +1.6 508,187 - +2.1 508,187 - +1.1 508,193 + +2.1 508,193 + -3.5 508,194 - -0.1 508,194 - +0.2 508,214 + IAI47_21255 0.11 -0.6 508,215 - IAI47_21255 0.11 +0.7 508,217 + IAI47_21255 0.11 -2.7 508,217 + IAI47_21255 0.11 +0.5 508,218 - IAI47_21255 0.12 -0.5 508,218 - IAI47_21255 0.12 +0.7 508,239 + IAI47_21255 0.15 -0.7 508,264 + IAI47_21255 0.20 -0.1 508,299 - IAI47_21255 0.26 -1.3 508,299 - IAI47_21255 0.26 -0.1 508,302 - IAI47_21255 0.26 +0.1 508,302 - IAI47_21255 0.26 +1.5 508,320 - IAI47_21255 0.29 +0.5 508,399 + IAI47_21255 0.43 +0.3 508,400 - IAI47_21255 0.44 -2.0 508,412 + IAI47_21255 0.46 -1.3 508,413 - IAI47_21255 0.46 -0.2 508,455 - IAI47_21255 0.53 -1.8 508,521 + IAI47_21255 0.65 -2.6 508,546 + IAI47_21255 0.69 -3.0 508,546 + IAI47_21255 0.69 +1.1 508,546 + IAI47_21255 0.69 -0.0 508,547 - IAI47_21255 0.69 +0.3 508,597 + IAI47_21255 0.78 +1.8 508,597 + IAI47_21255 0.78 +0.5 508,597 + IAI47_21255 0.78 -0.8 508,597 + IAI47_21255 0.78 +0.3 508,598 - IAI47_21255 0.78 -1.5 508,598 - IAI47_21255 0.78 +2.5 508,598 - IAI47_21255 0.78 -0.8 508,601 + IAI47_21255 0.79 -0.3 508,602 - -0.5 508,613 + IAI47_21255 0.81 -0.6 508,656 - IAI47_21255 0.88 +0.3 508,656 - IAI47_21255 0.88 -0.4 508,657 + IAI47_21255 0.89 -2.8 508,657 + IAI47_21255 0.89 -2.0 508,658 - IAI47_21255 0.89 +1.6 508,658 - IAI47_21255 0.89 +0.1 508,697 + +0.4 508,697 + +1.1 508,698 - +0.5 508,737 - -1.1 508,756 - -2.1 508,756 - -0.8 508,758 - -0.0 508,804 + -0.8 508,853 - +1.0 508,865 + +1.7 508,865 + +0.4 508,866 - +1.1 508,866 - -0.8 508,866 - +1.3 508,866 - +0.1 508,911 + -1.6 508,911 + -1.1 508,912 - -1.7 508,912 - +1.0 508,920 + -0.9 508,920 + +1.2 508,920 + -3.7 508,920 + +0.5 508,921 - +0.5 508,921 - +1.6 508,921 - -1.1 508,921 - +1.8 508,921 - -2.9 508,921 - +0.0 508,932 + -1.8 509,049 + IAI47_21260 0.22 -2.0 509,050 - IAI47_21260 0.22 -2.0 509,068 + IAI47_21260 0.25 -0.5 509,069 - IAI47_21260 0.25 +1.3 509,071 + IAI47_21260 0.25 +0.3 509,072 - IAI47_21260 0.26 +0.6 509,072 - IAI47_21260 0.26 +1.1 509,121 + IAI47_21260 0.33 +0.6 509,122 - IAI47_21260 0.33 +1.3 509,189 + IAI47_21260 0.43 -0.8 509,189 + IAI47_21260 0.43 -0.9 509,189 + IAI47_21260 0.43 +1.1 509,189 + IAI47_21260 0.43 -0.7 509,189 + IAI47_21260 0.43 +1.3 509,189 + IAI47_21260 0.43 -1.2 509,189 + IAI47_21260 0.43 -2.0 509,190 - IAI47_21260 0.43 -0.2 509,190 - IAI47_21260 0.43 -0.3 509,190 - IAI47_21260 0.43 +3.4 509,190 - IAI47_21260 0.43 +1.2 509,190 - IAI47_21260 0.43 -0.1 509,190 - IAI47_21260 0.43 +0.4 509,190 - IAI47_21260 0.43 -0.1 509,238 + IAI47_21260 0.51 +0.1 509,238 + IAI47_21260 0.51 +0.6 509,239 - IAI47_21260 0.51 +1.1 509,263 + IAI47_21260 0.54 +0.3 509,264 - IAI47_21260 0.55 +0.2 509,283 + IAI47_21260 0.57 -0.8 509,283 + IAI47_21260 0.57 -0.6 509,284 - IAI47_21260 0.58 +0.8 509,340 + IAI47_21260 0.66 -1.2 509,341 - IAI47_21260 0.66 +3.1 509,356 + IAI47_21260 0.68 -1.1 509,357 - IAI47_21260 0.69 +2.6 509,370 + IAI47_21260 0.71 +0.1 509,370 + IAI47_21260 0.71 -2.1 509,370 + IAI47_21260 0.71 -0.6 509,370 + IAI47_21260 0.71 -0.8 509,370 + IAI47_21260 0.71 +1.5 509,370 + IAI47_21260 0.71 -1.5 509,370 + IAI47_21260 0.71 -2.0 509,370 + IAI47_21260 0.71 +1.1 509,371 - IAI47_21260 0.71 +0.7 509,371 - IAI47_21260 0.71 -1.1 509,371 - IAI47_21260 0.71 -2.3 509,384 + IAI47_21260 0.73 -1.5 509,384 + IAI47_21260 0.73 -0.9 509,384 + IAI47_21260 0.73 -1.1 509,384 + IAI47_21260 0.73 -1.8 509,384 + IAI47_21260 0.73 +5.6 509,385 - IAI47_21260 0.73 +1.1 509,385 - IAI47_21260 0.73 -1.5 509,385 - IAI47_21260 0.73 -0.3 509,385 - IAI47_21260 0.73 -1.1 509,390 + IAI47_21260 0.74 +4.8 509,390 + IAI47_21260 0.74 -2.4 509,391 - IAI47_21260 0.74 -1.1 509,391 - IAI47_21260 0.74 -1.0 509,391 - IAI47_21260 0.74 -1.3 509,410 + IAI47_21260 0.77 -0.6 509,411 - IAI47_21260 0.77 +1.1 509,411 - IAI47_21260 0.77 +0.3 509,465 + IAI47_21260 0.85 -1.0 509,465 + IAI47_21260 0.85 +0.6 509,465 + IAI47_21260 0.85 +0.7 509,466 - IAI47_21260 0.85 -1.6 509,466 - IAI47_21260 0.85 -1.3 509,466 - IAI47_21260 0.85 +0.4 509,484 + IAI47_21260 0.88 -0.7 509,511 + -0.1 509,511 + +0.6 509,512 - +0.1 509,562 + -0.4 509,563 - +0.7 509,573 + -1.2 509,574 - +0.9 509,581 + +0.1 509,581 + -0.1 509,582 - -0.9 509,582 - +3.0 509,582 - +0.7 509,651 + +0.6 509,712 + -0.1 509,712 + -0.1
Or see this region's nucleotide sequence