Strain Fitness in Pantoea sp. MT58 around IAI47_20450

Experiment: Survival; Treatment=UGA synthetic gw pH4.4; TreatmentDuration=0.5hrs; Outgrowth=LBkan50

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntIAI47_20445 and IAI47_20450 are separated by 100 nucleotidesIAI47_20450 and IAI47_20455 are separated by 319 nucleotides IAI47_20445: IAI47_20445 - SDR family oxidoreductase, at 333,192 to 334,259 _20445 IAI47_20450: IAI47_20450 - LysR family transcriptional regulator, at 334,360 to 335,262 _20450 IAI47_20455: IAI47_20455 - sugar porter family MFS transporter, at 335,582 to 337,024 _20455 Position (kb) 334 335 336Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 333.360 kb on - strand, within IAI47_20445at 333.428 kb on + strand, within IAI47_20445at 333.461 kb on - strand, within IAI47_20445at 333.461 kb on - strand, within IAI47_20445at 333.461 kb on - strand, within IAI47_20445at 333.484 kb on + strand, within IAI47_20445at 333.484 kb on + strand, within IAI47_20445at 333.484 kb on + strand, within IAI47_20445at 333.485 kb on - strand, within IAI47_20445at 333.535 kb on - strand, within IAI47_20445at 333.618 kb on - strand, within IAI47_20445at 333.618 kb on - strand, within IAI47_20445at 333.618 kb on - strand, within IAI47_20445at 333.659 kb on + strand, within IAI47_20445at 333.659 kb on + strand, within IAI47_20445at 333.660 kb on - strand, within IAI47_20445at 333.660 kb on - strand, within IAI47_20445at 333.717 kb on - strand, within IAI47_20445at 333.717 kb on - strand, within IAI47_20445at 333.729 kb on - strand, within IAI47_20445at 333.732 kb on + strand, within IAI47_20445at 333.733 kb on - strand, within IAI47_20445at 333.752 kb on + strand, within IAI47_20445at 333.753 kb on - strand, within IAI47_20445at 333.753 kb on - strand, within IAI47_20445at 333.778 kb on + strand, within IAI47_20445at 333.779 kb on - strand, within IAI47_20445at 333.784 kb on + strand, within IAI47_20445at 333.784 kb on + strand, within IAI47_20445at 333.784 kb on + strand, within IAI47_20445at 333.784 kb on + strand, within IAI47_20445at 333.784 kb on + strand, within IAI47_20445at 333.784 kb on + strand, within IAI47_20445at 333.784 kb on + strand, within IAI47_20445at 333.784 kb on + strand, within IAI47_20445at 333.784 kb on + strand, within IAI47_20445at 333.784 kb on + strand, within IAI47_20445at 333.784 kb on + strand, within IAI47_20445at 333.785 kb on - strand, within IAI47_20445at 333.785 kb on - strand, within IAI47_20445at 333.785 kb on - strand, within IAI47_20445at 333.785 kb on - strand, within IAI47_20445at 333.785 kb on - strand, within IAI47_20445at 333.785 kb on - strand, within IAI47_20445at 333.785 kb on - strand, within IAI47_20445at 333.785 kb on - strand, within IAI47_20445at 333.785 kb on - strand, within IAI47_20445at 333.826 kb on + strand, within IAI47_20445at 333.826 kb on + strand, within IAI47_20445at 333.826 kb on + strand, within IAI47_20445at 333.826 kb on + strand, within IAI47_20445at 333.827 kb on - strand, within IAI47_20445at 333.827 kb on - strand, within IAI47_20445at 333.827 kb on - strand, within IAI47_20445at 333.834 kb on - strand, within IAI47_20445at 333.896 kb on - strand, within IAI47_20445at 333.916 kb on + strand, within IAI47_20445at 333.916 kb on + strand, within IAI47_20445at 333.916 kb on + strand, within IAI47_20445at 333.917 kb on - strand, within IAI47_20445at 333.917 kb on - strand, within IAI47_20445at 333.917 kb on - strand, within IAI47_20445at 334.071 kb on + strand, within IAI47_20445at 334.071 kb on + strand, within IAI47_20445at 334.071 kb on + strand, within IAI47_20445at 334.072 kb on - strand, within IAI47_20445at 334.207 kb on - strandat 334.207 kb on - strandat 334.220 kb on + strandat 334.287 kb on + strandat 334.288 kb on - strandat 334.293 kb on + strandat 334.326 kb on - strandat 334.383 kb on + strandat 334.383 kb on + strandat 334.384 kb on - strandat 334.384 kb on - strandat 334.558 kb on + strand, within IAI47_20450at 334.559 kb on - strand, within IAI47_20450at 334.561 kb on + strand, within IAI47_20450at 334.561 kb on + strand, within IAI47_20450at 334.669 kb on + strand, within IAI47_20450at 334.669 kb on + strand, within IAI47_20450at 334.669 kb on + strand, within IAI47_20450at 334.669 kb on + strand, within IAI47_20450at 334.670 kb on - strand, within IAI47_20450at 334.670 kb on - strand, within IAI47_20450at 334.670 kb on - strand, within IAI47_20450at 334.670 kb on - strand, within IAI47_20450at 334.670 kb on - strand, within IAI47_20450at 334.670 kb on - strand, within IAI47_20450at 334.794 kb on - strand, within IAI47_20450at 334.843 kb on - strand, within IAI47_20450at 334.882 kb on + strand, within IAI47_20450at 334.882 kb on + strand, within IAI47_20450at 334.882 kb on + strand, within IAI47_20450at 334.882 kb on + strand, within IAI47_20450at 334.883 kb on - strand, within IAI47_20450at 334.883 kb on - strand, within IAI47_20450at 334.945 kb on + strand, within IAI47_20450at 334.945 kb on + strand, within IAI47_20450at 334.945 kb on + strand, within IAI47_20450at 334.946 kb on - strand, within IAI47_20450at 334.946 kb on - strand, within IAI47_20450at 335.143 kb on - strand, within IAI47_20450at 335.156 kb on + strand, within IAI47_20450at 335.156 kb on + strand, within IAI47_20450at 335.156 kb on + strand, within IAI47_20450at 335.156 kb on + strand, within IAI47_20450at 335.156 kb on + strand, within IAI47_20450at 335.157 kb on - strand, within IAI47_20450at 335.187 kb on - strandat 335.187 kb on - strandat 335.187 kb on - strandat 335.187 kb on - strandat 335.219 kb on + strandat 335.231 kb on + strandat 335.240 kb on + strandat 335.240 kb on + strandat 335.240 kb on + strandat 335.294 kb on - strandat 335.294 kb on - strandat 335.294 kb on - strandat 335.378 kb on - strandat 335.387 kb on - strandat 335.390 kb on - strandat 335.443 kb on + strandat 335.444 kb on - strandat 335.564 kb on + strandat 335.577 kb on + strandat 335.577 kb on + strandat 335.577 kb on + strandat 335.577 kb on + strandat 335.577 kb on + strandat 335.577 kb on + strandat 335.578 kb on - strandat 335.578 kb on - strandat 335.578 kb on - strandat 335.597 kb on + strandat 335.598 kb on - strandat 335.599 kb on + strandat 335.600 kb on - strandat 335.600 kb on - strandat 335.600 kb on - strandat 335.663 kb on - strandat 335.663 kb on - strandat 335.663 kb on - strandat 335.663 kb on - strandat 335.682 kb on + strandat 335.682 kb on + strandat 335.682 kb on + strandat 335.682 kb on + strandat 335.682 kb on + strandat 335.682 kb on + strandat 335.682 kb on + strandat 335.683 kb on - strandat 335.683 kb on - strandat 335.683 kb on - strandat 335.694 kb on + strandat 335.694 kb on + strandat 335.694 kb on + strandat 335.694 kb on + strandat 335.694 kb on + strandat 335.694 kb on + strandat 335.694 kb on + strandat 335.695 kb on - strandat 335.695 kb on - strandat 335.695 kb on - strandat 335.703 kb on - strandat 335.733 kb on + strand, within IAI47_20455at 335.733 kb on + strand, within IAI47_20455at 335.734 kb on - strand, within IAI47_20455at 335.734 kb on - strand, within IAI47_20455at 335.734 kb on - strand, within IAI47_20455at 335.734 kb on - strand, within IAI47_20455at 335.737 kb on + strand, within IAI47_20455at 335.737 kb on + strand, within IAI47_20455at 335.737 kb on + strandat 335.737 kb on + strand, within IAI47_20455at 335.737 kb on + strand, within IAI47_20455at 335.738 kb on - strand, within IAI47_20455at 335.738 kb on - strand, within IAI47_20455at 335.738 kb on - strand, within IAI47_20455at 335.738 kb on - strand, within IAI47_20455at 335.738 kb on - strand, within IAI47_20455at 335.738 kb on - strand, within IAI47_20455at 335.738 kb on - strand, within IAI47_20455at 335.863 kb on + strand, within IAI47_20455at 335.863 kb on + strand, within IAI47_20455at 335.863 kb on + strand, within IAI47_20455at 335.863 kb on + strand, within IAI47_20455at 335.864 kb on - strand, within IAI47_20455at 335.864 kb on - strand, within IAI47_20455at 335.864 kb on - strand, within IAI47_20455at 335.864 kb on - strand, within IAI47_20455at 335.864 kb on - strand, within IAI47_20455at 335.864 kb on - strand, within IAI47_20455at 335.996 kb on + strand, within IAI47_20455at 335.996 kb on + strand, within IAI47_20455at 335.997 kb on - strand, within IAI47_20455at 335.997 kb on - strand, within IAI47_20455at 336.083 kb on + strand, within IAI47_20455at 336.083 kb on + strand, within IAI47_20455at 336.083 kb on + strand, within IAI47_20455at 336.083 kb on + strand, within IAI47_20455at 336.083 kb on + strand, within IAI47_20455at 336.084 kb on - strand, within IAI47_20455at 336.084 kb on - strand, within IAI47_20455at 336.084 kb on - strand, within IAI47_20455at 336.084 kb on - strand, within IAI47_20455at 336.084 kb on - strand, within IAI47_20455at 336.084 kb on - strand, within IAI47_20455at 336.084 kb on - strand, within IAI47_20455at 336.084 kb on - strand, within IAI47_20455at 336.084 kb on - strand, within IAI47_20455at 336.084 kb on - strand, within IAI47_20455at 336.103 kb on + strand, within IAI47_20455at 336.104 kb on - strand, within IAI47_20455at 336.189 kb on + strand, within IAI47_20455at 336.189 kb on + strand, within IAI47_20455at 336.189 kb on + strand, within IAI47_20455at 336.189 kb on + strand, within IAI47_20455at 336.189 kb on + strand, within IAI47_20455at 336.189 kb on + strand, within IAI47_20455at 336.189 kb on + strand, within IAI47_20455at 336.189 kb on + strand, within IAI47_20455at 336.189 kb on + strand, within IAI47_20455at 336.190 kb on - strand, within IAI47_20455at 336.190 kb on - strand, within IAI47_20455at 336.190 kb on - strand, within IAI47_20455at 336.190 kb on - strand, within IAI47_20455at 336.190 kb on - strand, within IAI47_20455at 336.190 kb on - strand, within IAI47_20455at 336.219 kb on + strand, within IAI47_20455at 336.219 kb on + strand, within IAI47_20455at 336.220 kb on - strand, within IAI47_20455at 336.220 kb on - strand, within IAI47_20455at 336.220 kb on - strand, within IAI47_20455

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Per-strain Table

Position Strand Gene LocusTag Fraction Survival; Treatment=UGA synthetic gw pH4.4; TreatmentDuration=0.5hrs; Outgrowth=LBkan50
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333,360 - IAI47_20445 0.16 -1.7
333,428 + IAI47_20445 0.22 +0.2
333,461 - IAI47_20445 0.25 +1.6
333,461 - IAI47_20445 0.25 -0.9
333,461 - IAI47_20445 0.25 +0.0
333,484 + IAI47_20445 0.27 +0.5
333,484 + IAI47_20445 0.27 +2.5
333,484 + IAI47_20445 0.27 +0.9
333,485 - IAI47_20445 0.27 +1.8
333,535 - IAI47_20445 0.32 -0.5
333,618 - IAI47_20445 0.40 +0.5
333,618 - IAI47_20445 0.40 -0.1
333,618 - IAI47_20445 0.40 +1.1
333,659 + IAI47_20445 0.44 -0.3
333,659 + IAI47_20445 0.44 -0.8
333,660 - IAI47_20445 0.44 -3.6
333,660 - IAI47_20445 0.44 +0.3
333,717 - IAI47_20445 0.49 -0.8
333,717 - IAI47_20445 0.49 +0.1
333,729 - IAI47_20445 0.50 +1.3
333,732 + IAI47_20445 0.51 -0.0
333,733 - IAI47_20445 0.51 -0.2
333,752 + IAI47_20445 0.52 -2.7
333,753 - IAI47_20445 0.53 +1.7
333,753 - IAI47_20445 0.53 -1.5
333,778 + IAI47_20445 0.55 +0.1
333,779 - IAI47_20445 0.55 -1.3
333,784 + IAI47_20445 0.55 -2.2
333,784 + IAI47_20445 0.55 +2.2
333,784 + IAI47_20445 0.55 -0.3
333,784 + IAI47_20445 0.55 -1.9
333,784 + IAI47_20445 0.55 -0.3
333,784 + IAI47_20445 0.55 +0.7
333,784 + IAI47_20445 0.55 -0.2
333,784 + IAI47_20445 0.55 -0.5
333,784 + IAI47_20445 0.55 +1.2
333,784 + IAI47_20445 0.55 +1.1
333,784 + IAI47_20445 0.55 +1.5
333,785 - IAI47_20445 0.56 -2.5
333,785 - IAI47_20445 0.56 -2.0
333,785 - IAI47_20445 0.56 -1.5
333,785 - IAI47_20445 0.56 -1.5
333,785 - IAI47_20445 0.56 -1.3
333,785 - IAI47_20445 0.56 +0.5
333,785 - IAI47_20445 0.56 -0.7
333,785 - IAI47_20445 0.56 +0.3
333,785 - IAI47_20445 0.56 +0.9
333,826 + IAI47_20445 0.59 +0.0
333,826 + IAI47_20445 0.59 -0.9
333,826 + IAI47_20445 0.59 +0.5
333,826 + IAI47_20445 0.59 +0.9
333,827 - IAI47_20445 0.59 +3.0
333,827 - IAI47_20445 0.59 -0.9
333,827 - IAI47_20445 0.59 +0.1
333,834 - IAI47_20445 0.60 -0.2
333,896 - IAI47_20445 0.66 -0.9
333,916 + IAI47_20445 0.68 -1.1
333,916 + IAI47_20445 0.68 +0.3
333,916 + IAI47_20445 0.68 +0.5
333,917 - IAI47_20445 0.68 +2.8
333,917 - IAI47_20445 0.68 +0.9
333,917 - IAI47_20445 0.68 +0.5
334,071 + IAI47_20445 0.82 +0.2
334,071 + IAI47_20445 0.82 -0.9
334,071 + IAI47_20445 0.82 -1.1
334,072 - IAI47_20445 0.82 +1.2
334,207 - +0.1
334,207 - +2.0
334,220 + +1.0
334,287 + +0.3
334,288 - -0.4
334,293 + +0.8
334,326 - -2.3
334,383 + -0.9
334,383 + -1.1
334,384 - -1.5
334,384 - +0.7
334,558 + IAI47_20450 0.22 +1.6
334,559 - IAI47_20450 0.22 -2.2
334,561 + IAI47_20450 0.22 -1.7
334,561 + IAI47_20450 0.22 -0.5
334,669 + IAI47_20450 0.34 -0.5
334,669 + IAI47_20450 0.34 -1.0
334,669 + IAI47_20450 0.34 -2.6
334,669 + IAI47_20450 0.34 -0.5
334,670 - IAI47_20450 0.34 +1.0
334,670 - IAI47_20450 0.34 +0.7
334,670 - IAI47_20450 0.34 -0.3
334,670 - IAI47_20450 0.34 -0.5
334,670 - IAI47_20450 0.34 -0.5
334,670 - IAI47_20450 0.34 -0.9
334,794 - IAI47_20450 0.48 -1.1
334,843 - IAI47_20450 0.53 -0.9
334,882 + IAI47_20450 0.58 -0.5
334,882 + IAI47_20450 0.58 +3.4
334,882 + IAI47_20450 0.58 +0.3
334,882 + IAI47_20450 0.58 +2.3
334,883 - IAI47_20450 0.58 -2.0
334,883 - IAI47_20450 0.58 -1.1
334,945 + IAI47_20450 0.65 +1.0
334,945 + IAI47_20450 0.65 -1.0
334,945 + IAI47_20450 0.65 -1.2
334,946 - IAI47_20450 0.65 +1.9
334,946 - IAI47_20450 0.65 -2.2
335,143 - IAI47_20450 0.87 -0.1
335,156 + IAI47_20450 0.88 +0.3
335,156 + IAI47_20450 0.88 +1.7
335,156 + IAI47_20450 0.88 +1.5
335,156 + IAI47_20450 0.88 -2.0
335,156 + IAI47_20450 0.88 -0.7
335,157 - IAI47_20450 0.88 -0.7
335,187 - -1.5
335,187 - -1.0
335,187 - -2.2
335,187 - +1.8
335,219 + +0.6
335,231 + -1.1
335,240 + -1.7
335,240 + -0.7
335,240 + -1.3
335,294 - +0.4
335,294 - +2.5
335,294 - +2.2
335,378 - -0.3
335,387 - +1.1
335,390 - +1.4
335,443 + -1.4
335,444 - +1.0
335,564 + -1.1
335,577 + -2.4
335,577 + -1.0
335,577 + -0.1
335,577 + +3.2
335,577 + -1.3
335,577 + +0.3
335,578 - +1.5
335,578 - +2.3
335,578 - -3.7
335,597 + +2.7
335,598 - -1.7
335,599 + -1.0
335,600 - +0.8
335,600 - +1.1
335,600 - -0.1
335,663 - -0.7
335,663 - +1.5
335,663 - -3.4
335,663 - +0.9
335,682 + +2.5
335,682 + +2.8
335,682 + -0.1
335,682 + -1.8
335,682 + +1.0
335,682 + -1.3
335,682 + +2.2
335,683 - -1.5
335,683 - +0.1
335,683 - -1.9
335,694 + +0.3
335,694 + +0.3
335,694 + +0.9
335,694 + +0.1
335,694 + +1.3
335,694 + -0.4
335,694 + -1.1
335,695 - -0.7
335,695 - -1.3
335,695 - +0.7
335,703 - +1.7
335,733 + IAI47_20455 0.10 +2.0
335,733 + IAI47_20455 0.10 +0.6
335,734 - IAI47_20455 0.11 -0.4
335,734 - IAI47_20455 0.11 +3.3
335,734 - IAI47_20455 0.11 +0.7
335,734 - IAI47_20455 0.11 -0.3
335,737 + IAI47_20455 0.11 +1.5
335,737 + IAI47_20455 0.11 +0.7
335,737 + +1.5
335,737 + IAI47_20455 0.11 +1.6
335,737 + IAI47_20455 0.11 -0.2
335,738 - IAI47_20455 0.11 +2.2
335,738 - IAI47_20455 0.11 +0.3
335,738 - IAI47_20455 0.11 -1.1
335,738 - IAI47_20455 0.11 -2.4
335,738 - IAI47_20455 0.11 -1.9
335,738 - IAI47_20455 0.11 -1.1
335,738 - IAI47_20455 0.11 -0.1
335,863 + IAI47_20455 0.19 -0.1
335,863 + IAI47_20455 0.19 -0.9
335,863 + IAI47_20455 0.19 +2.4
335,863 + IAI47_20455 0.19 +0.6
335,864 - IAI47_20455 0.20 -2.9
335,864 - IAI47_20455 0.20 +0.4
335,864 - IAI47_20455 0.20 -2.0
335,864 - IAI47_20455 0.20 -1.1
335,864 - IAI47_20455 0.20 -1.1
335,864 - IAI47_20455 0.20 -2.1
335,996 + IAI47_20455 0.29 -1.5
335,996 + IAI47_20455 0.29 -1.0
335,997 - IAI47_20455 0.29 -0.1
335,997 - IAI47_20455 0.29 -1.0
336,083 + IAI47_20455 0.35 +1.2
336,083 + IAI47_20455 0.35 +0.7
336,083 + IAI47_20455 0.35 -1.4
336,083 + IAI47_20455 0.35 +1.6
336,083 + IAI47_20455 0.35 +1.2
336,084 - IAI47_20455 0.35 -0.1
336,084 - IAI47_20455 0.35 -0.9
336,084 - IAI47_20455 0.35 -0.1
336,084 - IAI47_20455 0.35 +1.3
336,084 - IAI47_20455 0.35 +1.7
336,084 - IAI47_20455 0.35 -0.1
336,084 - IAI47_20455 0.35 -1.9
336,084 - IAI47_20455 0.35 -0.3
336,084 - IAI47_20455 0.35 -1.1
336,084 - IAI47_20455 0.35 +0.6
336,103 + IAI47_20455 0.36 +2.3
336,104 - IAI47_20455 0.36 +1.2
336,189 + IAI47_20455 0.42 +1.0
336,189 + IAI47_20455 0.42 +2.4
336,189 + IAI47_20455 0.42 +2.0
336,189 + IAI47_20455 0.42 +0.6
336,189 + IAI47_20455 0.42 +0.7
336,189 + IAI47_20455 0.42 -1.0
336,189 + IAI47_20455 0.42 +0.6
336,189 + IAI47_20455 0.42 +0.6
336,189 + IAI47_20455 0.42 +1.3
336,190 - IAI47_20455 0.42 +1.4
336,190 - IAI47_20455 0.42 -1.3
336,190 - IAI47_20455 0.42 +0.6
336,190 - IAI47_20455 0.42 +0.2
336,190 - IAI47_20455 0.42 -0.1
336,190 - IAI47_20455 0.42 -2.5
336,219 + IAI47_20455 0.44 +0.7
336,219 + IAI47_20455 0.44 +2.5
336,220 - IAI47_20455 0.44 +1.2
336,220 - IAI47_20455 0.44 -0.4
336,220 - IAI47_20455 0.44 +2.0

Or see this region's nucleotide sequence