Strain Fitness in Pantoea sp. MT58 around IAI47_18070

Experiment: Survival; Treatment=UGA synthetic gw pH4.4; TreatmentDuration=0.5hrs; Outgrowth=LBkan50

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Survival; Treatment=UGA synthetic gw pH4.4; TreatmentDuration=0.5hrs; Outgrowth=LBkan50
3,842,375	-		IAI47_18060	0.56	-0.9
3,842,438	+		IAI47_18060	0.66	-1.4
3,842,439	-		IAI47_18060	0.66	-1.6
3,842,439	-		IAI47_18060	0.66	+1.4
3,842,494	+		IAI47_18060	0.76	-0.1
3,842,495	-		IAI47_18060	0.76	-2.0
3,842,496	+		IAI47_18060	0.76	+0.4
3,842,496	+		IAI47_18060	0.76	+2.6
3,842,496	+		IAI47_18060	0.76	+0.7
3,842,496	+		IAI47_18060	0.76	-1.6
3,842,496	+		IAI47_18060	0.76	+1.5
3,842,497	-		IAI47_18060	0.76	+4.0
3,842,497	-		IAI47_18060	0.76	-0.1
3,842,497	-		IAI47_18060	0.76	-1.4
3,842,539	+		IAI47_18060	0.83	+1.4
3,842,539	+		IAI47_18060	0.83	-0.4
3,842,540	-		IAI47_18060	0.84	-0.6
3,842,548	+		IAI47_18060	0.85	-2.5
3,842,548	+		IAI47_18060	0.85	-0.1
3,842,548	+		IAI47_18060	0.85	+0.6
3,842,548	+		IAI47_18060	0.85	+1.2
3,842,549	-		IAI47_18060	0.85	+1.1
3,842,549	-		IAI47_18060	0.85	-0.0
3,842,549	-		IAI47_18060	0.85	-1.6
3,842,549	-		IAI47_18060	0.85	+0.2
3,842,549	-		IAI47_18060	0.85	-1.3
3,842,549	-		IAI47_18060	0.85	-1.3
3,842,549	-		IAI47_18060	0.85	-0.8
3,842,573	+		IAI47_18060	0.89	-0.0
3,842,573	+		IAI47_18060	0.89	-1.3
3,842,573	+		IAI47_18060	0.89	+2.3
3,842,574	-		IAI47_18060	0.89	-2.2
3,842,579	+				-2.3
3,842,579	+				+0.0
3,842,579	+				+2.7
3,842,579	+				-1.5
3,842,580	-				+0.5
3,842,580	-				-1.1
3,842,580	-				-0.5
3,842,580	-				+0.4
3,842,636	+				+0.8
3,842,636	+				+0.7
3,842,636	+				-2.0
3,842,636	+				-0.7
3,842,636	+				-0.2
3,842,636	+				+0.4
3,842,636	+				+0.9
3,842,636	+				+1.3
3,842,636	+				+1.8
3,842,636	+				+0.9
3,842,637	-				-0.4
3,842,637	-				-0.4
3,842,637	-				-0.7
3,842,637	-				+0.8
3,842,637	-				-0.1
3,842,637	-				+1.3
3,842,637	-				-1.2
3,842,649	+				-1.8
3,842,650	-				+1.1
3,842,650	-				-3.1
3,842,650	-				+0.9
3,842,650	-				+2.0
3,842,672	+				+0.7
3,842,673	-				+1.0
3,842,673	-				-0.2
3,842,673	-				-0.4
3,842,673	-				+2.8
3,842,673	-				-2.7
3,842,701	+				+1.2
3,842,701	+				+1.9
3,842,702	-				+0.5
3,842,702	-				+0.3
3,842,792	+		IAI47_18065	0.14	+0.7
3,842,792	+		IAI47_18065	0.14	+0.4
3,842,793	-		IAI47_18065	0.14	-1.2
3,842,820	-		IAI47_18065	0.18	+1.4
3,842,820	-		IAI47_18065	0.18	-2.4
3,842,861	+		IAI47_18065	0.24	-0.6
3,842,861	+		IAI47_18065	0.24	-2.7
3,842,861	+		IAI47_18065	0.24	+0.7
3,842,861	+		IAI47_18065	0.24	-1.1
3,842,883	+		IAI47_18065	0.27	-0.4
3,843,050	+		IAI47_18065	0.52	-0.1
3,843,050	+		IAI47_18065	0.52	+0.3
3,843,051	-		IAI47_18065	0.52	-0.9
3,843,051	-		IAI47_18065	0.52	-1.7
3,843,051	-		IAI47_18065	0.52	-0.3
3,843,122	-		IAI47_18065	0.63	-2.7
3,843,151	+		IAI47_18065	0.67	-0.6
3,843,151	+		IAI47_18065	0.67	-0.5
3,843,152	-		IAI47_18065	0.68	-1.4
3,843,152	-		IAI47_18065	0.68	-2.0
3,843,180	-		IAI47_18065	0.72	-0.6
3,843,180	-		IAI47_18065	0.72	-1.8
3,843,208	+		IAI47_18065	0.76	-0.3
3,843,216	+		IAI47_18065	0.77	+0.9
3,843,216	+		IAI47_18065	0.77	+0.1
3,843,217	-		IAI47_18065	0.77	+0.8
3,843,318	+				-0.1
3,843,336	+				-1.4
3,843,336	+				-3.3
3,843,336	+				-0.2
3,843,336	+				-1.6
3,843,337	-				-0.2
3,843,368	+				-3.3
3,843,368	+				-0.1
3,843,368	+				-1.1
3,843,368	+				-1.4
3,843,368	+				-0.7
3,843,368	+				+1.7
3,843,369	-				+0.3
3,843,369	-				-1.6
3,843,369	-				-0.3
3,843,369	-				+1.5
3,843,372	+				-1.9
3,843,373	-				-1.7
3,843,373	-				-0.6
3,843,373	-				+0.8
3,844,467	-				+0.3
3,844,467	-				-2.2
3,844,467	-				+0.2
3,844,467	-				+0.6
3,844,467	-				-1.5
3,844,467	-				-1.5
3,844,467	-				+0.2
3,844,472	-				+0.3
3,844,472	-				-1.8
3,844,472	-				-1.1
3,844,508	+				-0.7
3,844,508	+				-0.0
3,844,508	+				+2.1
3,844,508	+				+2.7
3,844,509	-				-0.1
3,844,509	-				-1.6
3,844,509	-				-0.7
3,844,509	-				+0.6
3,844,509	-				+1.7
3,844,509	-				+1.3
3,844,509	-				+0.4
3,844,509	-				-0.1
3,844,509	-				-2.9
3,844,627	+		IAI47_18075	0.19	+0.3
3,844,627	+		IAI47_18075	0.19	+0.8
3,844,627	+		IAI47_18075	0.19	+2.2
3,844,627	+		IAI47_18075	0.19	+0.7
3,844,627	+		IAI47_18075	0.19	-0.4
3,844,627	+		IAI47_18075	0.19	-0.3
3,844,628	-		IAI47_18075	0.19	+0.9
3,844,628	-		IAI47_18075	0.19	+0.0
3,844,628	-		IAI47_18075	0.19	+1.2
3,844,628	-		IAI47_18075	0.19	+0.4
3,844,628	-		IAI47_18075	0.19	-2.3
3,844,629	-		IAI47_18075	0.19	-0.0
3,844,637	+		IAI47_18075	0.20	+1.8
3,844,637	+		IAI47_18075	0.20	+0.0
3,844,637	+		IAI47_18075	0.20	+0.8
3,844,638	-		IAI47_18075	0.21	+1.1
3,844,638	-		IAI47_18075	0.21	+0.4
3,844,638	-		IAI47_18075	0.21	-0.5
3,844,688	-		IAI47_18075	0.27	+1.0
3,844,709	+		IAI47_18075	0.30	+0.0
3,844,789	+		IAI47_18075	0.40	+1.6
3,844,789	+		IAI47_18075	0.40	+0.4
3,844,789	+		IAI47_18075	0.40	+0.4
3,844,789	+		IAI47_18075	0.40	-0.5
3,844,789	+		IAI47_18075	0.40	-0.2
3,844,789	+		IAI47_18075	0.40	+0.9
3,844,790	-		IAI47_18075	0.40	+2.1
3,844,790	-		IAI47_18075	0.40	+0.8
3,844,790	-		IAI47_18075	0.40	-1.6
3,844,790	-		IAI47_18075	0.40	+2.5
3,844,790	-		IAI47_18075	0.40	-0.1
3,844,790	-		IAI47_18075	0.40	-0.9
3,844,790	-		IAI47_18075	0.40	+1.1
3,844,796	+		IAI47_18075	0.41	-0.9
3,844,797	-		IAI47_18075	0.41	-0.4
3,844,797	-		IAI47_18075	0.41	-2.1
3,844,797	-		IAI47_18075	0.41	-1.9
3,844,797	-		IAI47_18075	0.41	-1.6
3,844,879	+		IAI47_18075	0.52	+0.7
3,844,879	+		IAI47_18075	0.52	-0.4
3,844,882	+		IAI47_18075	0.52	-1.3
3,844,882	+		IAI47_18075	0.52	-0.4
3,844,883	-		IAI47_18075	0.52	+0.1
3,844,883	-		IAI47_18075	0.52	+2.7
3,844,883	-		IAI47_18075	0.52	-1.6
3,845,037	+		IAI47_18075	0.72	-0.8
3,845,037	+		IAI47_18075	0.72	+2.2
3,845,038	-		IAI47_18075	0.73	-0.7
3,845,038	-		IAI47_18075	0.73	+1.2
3,845,057	+		IAI47_18075	0.75	+2.2
3,845,057	+		IAI47_18075	0.75	-1.4
3,845,057	+		IAI47_18075	0.75	-0.7
3,845,057	+		IAI47_18075	0.75	+0.2
3,845,057	+		IAI47_18075	0.75	+1.9
3,845,057	+		IAI47_18075	0.75	+2.2
3,845,057	+		IAI47_18075	0.75	+1.2
3,845,058	-		IAI47_18075	0.75	-1.5
3,845,126	+		IAI47_18075	0.84	+0.0
3,845,126	+		IAI47_18075	0.84	-3.2
3,845,127	-		IAI47_18075	0.84	+2.0
3,845,127	-		IAI47_18075	0.84	+0.9
3,845,137	-		IAI47_18075	0.85	+1.1
3,845,166	+		IAI47_18075	0.89	-2.0
3,845,166	+		IAI47_18075	0.89	+1.7
3,845,226	+				+0.7
3,845,226	+				+1.0
3,845,227	-				+0.0
3,845,251	+				+1.0
3,845,265	+				+0.9
3,845,297	+				+0.3
3,845,297	+				-1.4
3,845,298	-				-1.1
3,845,298	-				-1.9
3,845,298	-				-1.1
3,845,298	-				+0.3
3,845,298	-				+1.0
3,845,298	-				-0.2
3,845,298	-				+2.3
3,845,298	-				-1.6
3,845,298	-				+1.2
3,845,298	-				+1.0
3,845,305	+				+0.5
3,845,306	-				+2.4
3,845,309	+				+1.2
3,845,310	-				+0.2
3,845,310	-				-0.9
3,845,310	-				+0.7
3,845,310	-				-0.6
3,845,317	+				+0.5
3,845,317	+				-0.5
3,845,317	+				-2.3
3,845,317	+				+2.6
3,845,317	+				+0.5
3,845,317	+				-1.3
3,845,317	+				+1.0
3,845,317	+				+0.6
3,845,317	+				+1.7
3,845,317	+				-1.9
3,845,317	+				-2.0
3,845,317	+				+1.1
3,845,318	-				-0.3
3,845,318	-				-2.3
3,845,318	-				+1.0
3,845,318	-				+1.4
3,845,318	-				-1.0
3,845,318	-				+0.9
3,845,319	+				-0.1
3,845,319	+				+0.9
3,845,319	+				+0.1
3,845,319	+				-0.4
3,845,319	+				+1.3
3,845,319	+				+2.6
3,845,319	+				-0.9
3,845,319	+				-0.4
3,845,320	-				+0.1
3,845,320	-				+0.1
3,845,320	-				-1.0
3,845,320	-				+2.6
3,845,320	-				-2.1
3,845,334	+				-2.8
3,845,334	+				+0.3
3,845,334	+				-0.3
3,845,334	+				+1.1
3,845,334	+				-1.8
3,845,335	-				+1.0
3,845,335	-				+1.9
3,845,335	-				+1.3
3,845,335	-				-1.3
3,845,335	-				+0.9
3,845,335	-				-1.0
3,845,338	+				+0.7
3,845,338	+				+1.1
3,845,338	+				-1.1
3,845,338	+				+1.4
3,845,338	+				+0.3
3,845,338	+				+0.8
3,845,338	+				+2.2
3,845,338	+				-0.5
3,845,338	+				+1.3
3,845,338	+				+0.5
3,845,339	-				-2.1
3,845,339	-				+1.4
3,845,339	-				+0.2
3,845,339	-				-0.7
3,845,339	-				+0.1
3,845,339	-				-0.9
3,845,339	-				-1.3
3,845,339	-				+3.2
3,845,339	-				+0.2
3,845,339	-				+0.6
3,845,339	-				-0.9
3,845,339	-				+0.4
3,845,339	-				-3.7
3,845,339	-				-1.3
3,845,339	-				+1.1
3,845,352	+				+3.0
3,845,353	-				+1.4
3,845,374	-				+0.5
3,845,383	+				+0.7
3,845,384	-				+2.6
3,845,384	-				+2.3
3,845,424	+		IAI47_18080	0.17	-0.2
3,845,425	-		IAI47_18080	0.17	+0.8
3,845,425	-		IAI47_18080	0.17	-0.3
3,845,435	+		IAI47_18080	0.19	-2.6
3,845,435	+		IAI47_18080	0.19	-0.7
3,845,435	+		IAI47_18080	0.19	-0.5
3,845,435	+		IAI47_18080	0.19	-0.5
3,845,435	+		IAI47_18080	0.19	+1.7
3,845,435	+		IAI47_18080	0.19	+1.1
3,845,435	+		IAI47_18080	0.19	+3.2
3,845,435	+		IAI47_18080	0.19	+0.3
3,845,435	+		IAI47_18080	0.19	+0.5
3,845,435	+		IAI47_18080	0.19	-0.3
3,845,436	-		IAI47_18080	0.19	+0.8
3,845,436	-		IAI47_18080	0.19	-0.3
3,845,436	-		IAI47_18080	0.19	-0.1
3,845,436	-		IAI47_18080	0.19	+0.0
3,845,436	-		IAI47_18080	0.19	+2.3
3,845,436	-		IAI47_18080	0.19	+1.1
3,845,436	-		IAI47_18080	0.19	+2.7
3,845,436	-		IAI47_18080	0.19	-0.3
3,845,436	-		IAI47_18080	0.19	-3.1
3,845,436	-		IAI47_18080	0.19	+3.7
3,845,436	-		IAI47_18080	0.19	+0.6
3,845,436	-		IAI47_18080	0.19	-0.5
3,845,436	-		IAI47_18080	0.19	-1.4
3,845,436	-		IAI47_18080	0.19	+1.5
3,845,438	+		IAI47_18080	0.20	-0.4