Strain Fitness in Pantoea sp. MT58 around IAI47_16905

Experiment: Survival; Treatment=UGA synthetic gw pH4.4; TreatmentDuration=0.5hrs; Outgrowth=LBkan50

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Survival; Treatment=UGA synthetic gw pH4.4; TreatmentDuration=0.5hrs; Outgrowth=LBkan50
3,583,927	+		IAI47_16900	0.57	+1.2
3,584,063	-		IAI47_16900	0.68	-1.4
3,584,083	+		IAI47_16900	0.70	+1.1
3,584,083	+		IAI47_16900	0.70	+0.6
3,584,083	+		IAI47_16900	0.70	-1.3
3,584,255	+		IAI47_16900	0.84	-0.5
3,584,255	+		IAI47_16900	0.84	+0.0
3,584,255	+		IAI47_16900	0.84	-0.6
3,584,364	-				-2.0
3,584,364	-				-0.5
3,584,421	-				-2.9
3,584,421	-				+0.6
3,584,464	+				-1.7
3,584,555	+				-0.9
3,584,555	+				+0.9
3,584,581	+				-1.5
3,584,581	+				-1.2
3,584,581	+				-0.3
3,584,582	-				+1.5
3,584,606	+				+0.3
3,584,633	+				-0.8
3,584,635	+				+1.2
3,584,635	+				-0.7
3,584,635	+				+1.3
3,584,635	+				-1.7
3,584,635	+				-0.3
3,584,636	-				+0.3
3,584,636	-				+0.6
3,584,636	-				+0.7
3,584,636	-				-1.0
3,584,700	+				+0.8
3,584,700	+				-0.4
3,584,700	+				-0.5
3,584,701	-				+0.5
3,584,701	-				+1.4
3,584,703	+				+1.9
3,584,703	+				+1.0
3,584,703	+				+1.9
3,584,703	+				-0.3
3,584,703	+				-2.2
3,584,704	-				-0.4
3,584,704	-				-2.3
3,584,704	-				-1.2
3,584,704	-				-2.3
3,584,704	-				+0.6
3,584,750	+				+0.2
3,584,750	+				-0.1
3,584,750	+				+1.2
3,584,750	+				+4.0
3,584,750	+				+0.8
3,584,750	+				-0.2
3,584,750	+				+1.0
3,584,750	+				-0.7
3,584,750	+				-1.0
3,584,750	+				-0.1
3,584,751	-				+0.4
3,584,751	-				+0.7
3,584,751	-				-0.5
3,584,751	-				+1.1
3,584,765	+				-0.8
3,584,766	-				-1.9
3,584,766	-				+0.5
3,584,766	-				+0.8
3,584,841	+				+0.3
3,584,842	-				-0.5
3,584,859	+				+2.8
3,584,875	+				+2.0
3,584,892	-				+0.8
3,584,911	+				-1.4
3,584,912	-				+2.1
3,584,912	-				+1.6
3,584,957	+				-0.2
3,584,958	-				-1.0
3,584,960	+				+0.6
3,584,960	+				-0.6
3,584,960	+				-0.9
3,584,960	+				+0.0
3,584,961	-				-0.5
3,584,961	-				+1.2
3,584,961	-				-0.8
3,584,961	-				+0.3
3,584,961	-				-0.8
3,584,961	-				+0.1
3,584,961	-				+1.4
3,584,961	-				-3.6
3,584,961	-				-1.7
3,584,961	-				+1.6
3,584,961	-				+0.4
3,584,963	+				+0.5
3,585,066	-		IAI47_16905	0.11	-0.4
3,585,076	+		IAI47_16905	0.12	-0.7
3,585,076	+		IAI47_16905	0.12	+0.7
3,585,076	+		IAI47_16905	0.12	+0.8
3,585,076	+		IAI47_16905	0.12	-0.2
3,585,077	-		IAI47_16905	0.12	-0.6
3,585,077	-		IAI47_16905	0.12	-1.1
3,585,085	+		IAI47_16905	0.12	-0.7
3,585,097	+		IAI47_16905	0.13	+0.9
3,585,097	+		IAI47_16905	0.13	+0.2
3,585,097	+		IAI47_16905	0.13	+2.9
3,585,097	+		IAI47_16905	0.13	+1.2
3,585,097	+		IAI47_16905	0.13	+0.2
3,585,097	+		IAI47_16905	0.13	+0.8
3,585,097	+		IAI47_16905	0.13	+1.4
3,585,097	+		IAI47_16905	0.13	-0.6
3,585,097	+		IAI47_16905	0.13	-0.5
3,585,097	+		IAI47_16905	0.13	-0.1
3,585,097	+		IAI47_16905	0.13	-1.4
3,585,097	+		IAI47_16905	0.13	-0.6
3,585,097	+		IAI47_16905	0.13	+0.8
3,585,097	+		IAI47_16905	0.13	-0.5
3,585,097	+		IAI47_16905	0.13	-1.2
3,585,098	-		IAI47_16905	0.13	-2.3
3,585,098	-		IAI47_16905	0.13	-1.0
3,585,098	-		IAI47_16905	0.13	-0.5
3,585,098	-		IAI47_16905	0.13	+0.6
3,585,098	-		IAI47_16905	0.13	+1.5
3,585,098	-		IAI47_16905	0.13	+0.2
3,585,098	-		IAI47_16905	0.13	-0.5
3,585,209	+		IAI47_16905	0.19	+0.3
3,585,209	+		IAI47_16905	0.19	+0.6
3,585,209	+		IAI47_16905	0.19	+2.7
3,585,209	+		IAI47_16905	0.19	+2.7
3,585,209	+		IAI47_16905	0.19	+0.2
3,585,209	+		IAI47_16905	0.19	-0.8
3,585,209	+		IAI47_16905	0.19	-0.9
3,585,209	+		IAI47_16905	0.19	-0.2
3,585,209	+		IAI47_16905	0.19	+1.2
3,585,209	+		IAI47_16905	0.19	-3.1
3,585,209	+				+1.8
3,585,209	+		IAI47_16905	0.19	+1.8
3,585,209	+		IAI47_16905	0.19	+1.8
3,585,209	+		IAI47_16905	0.19	+2.1
3,585,209	+		IAI47_16905	0.19	-0.7
3,585,209	+		IAI47_16905	0.19	-0.3
3,585,210	-		IAI47_16905	0.19	+2.4
3,585,210	-		IAI47_16905	0.19	+0.6
3,585,210	-		IAI47_16905	0.19	+4.4
3,585,210	-		IAI47_16905	0.19	-1.0
3,585,210	-		IAI47_16905	0.19	+1.1
3,585,225	+		IAI47_16905	0.20	+1.1
3,585,225	+		IAI47_16905	0.20	+0.2
3,585,269	+		IAI47_16905	0.23	+0.3
3,585,304	+		IAI47_16905	0.25	+0.2
3,585,304	+		IAI47_16905	0.25	+1.2
3,585,304	+		IAI47_16905	0.25	+0.8
3,585,304	+		IAI47_16905	0.25	-0.2
3,585,305	-		IAI47_16905	0.25	-0.3
3,585,305	-		IAI47_16905	0.25	+1.7
3,585,323	-		IAI47_16905	0.26	+0.9
3,585,361	+		IAI47_16905	0.28	-1.9
3,585,421	+		IAI47_16905	0.31	-2.7
3,585,422	-		IAI47_16905	0.31	+1.4
3,585,422	-		IAI47_16905	0.31	+2.6
3,585,481	+		IAI47_16905	0.35	-2.9
3,585,481	+		IAI47_16905	0.35	+0.2
3,585,481	+		IAI47_16905	0.35	+0.6
3,585,481	+		IAI47_16905	0.35	+0.2
3,585,481	+		IAI47_16905	0.35	+3.9
3,585,482	-		IAI47_16905	0.35	+0.5
3,585,482	-		IAI47_16905	0.35	-1.0
3,585,482	-		IAI47_16905	0.35	-0.5
3,585,482	-		IAI47_16905	0.35	-0.4
3,585,485	+		IAI47_16905	0.35	+0.3
3,585,486	-		IAI47_16905	0.35	-0.2
3,585,486	-		IAI47_16905	0.35	+0.7
3,585,486	-		IAI47_16905	0.35	+0.2
3,585,486	-		IAI47_16905	0.35	+1.2
3,585,486	-		IAI47_16905	0.35	-0.3
3,585,486	-		IAI47_16905	0.35	+1.4
3,585,486	-		IAI47_16905	0.35	+0.5
3,585,528	+		IAI47_16905	0.38	+1.1
3,585,617	+		IAI47_16905	0.43	-2.7
3,585,617	+		IAI47_16905	0.43	+0.6
3,585,617	+		IAI47_16905	0.43	-2.5
3,585,618	-		IAI47_16905	0.43	-0.2
3,585,618	-		IAI47_16905	0.43	+2.4
3,585,618	-		IAI47_16905	0.43	+0.2
3,585,618	-		IAI47_16905	0.43	+0.9
3,585,618	-		IAI47_16905	0.43	-1.3
3,585,619	+		IAI47_16905	0.43	+0.3
3,585,619	+		IAI47_16905	0.43	+2.4
3,585,619	+		IAI47_16905	0.43	-1.7
3,585,620	-		IAI47_16905	0.43	-1.4
3,585,620	-		IAI47_16905	0.43	-2.1
3,585,620	-		IAI47_16905	0.43	-1.8
3,585,620	-		IAI47_16905	0.43	-0.2
3,585,620	-		IAI47_16905	0.43	+0.1
3,585,692	+		IAI47_16905	0.47	-2.4
3,585,692	+		IAI47_16905	0.47	+0.1
3,585,692	+		IAI47_16905	0.47	+1.8
3,585,693	-		IAI47_16905	0.47	-2.1
3,585,693	-		IAI47_16905	0.47	-2.4
3,585,712	+		IAI47_16905	0.48	-0.1
3,585,712	+		IAI47_16905	0.48	+2.2
3,585,712	+		IAI47_16905	0.48	+0.5
3,585,712	+		IAI47_16905	0.48	-0.5
3,585,712	+		IAI47_16905	0.48	+1.3
3,585,712	+		IAI47_16905	0.48	+0.8
3,585,712	+		IAI47_16905	0.48	+0.8
3,585,713	-		IAI47_16905	0.48	+0.0
3,585,713	-		IAI47_16905	0.48	-0.6
3,585,713	-		IAI47_16905	0.48	-1.7
3,585,713	-		IAI47_16905	0.48	+0.8
3,585,713	-		IAI47_16905	0.48	-1.3
3,585,713	-		IAI47_16905	0.48	-0.5
3,585,713	-		IAI47_16905	0.48	-0.9
3,585,713	-		IAI47_16905	0.48	-1.4
3,585,734	+		IAI47_16905	0.49	+1.2
3,585,734	+		IAI47_16905	0.49	-1.3
3,585,734	+		IAI47_16905	0.49	-1.0
3,585,734	+		IAI47_16905	0.49	-1.3
3,585,734	+		IAI47_16905	0.49	+1.7
3,585,734	+		IAI47_16905	0.49	+3.3
3,585,735	-		IAI47_16905	0.49	+1.0
3,585,735	-		IAI47_16905	0.49	+1.1
3,585,735	-		IAI47_16905	0.49	+0.9
3,585,735	-		IAI47_16905	0.49	+0.1
3,585,763	+		IAI47_16905	0.51	+2.1
3,585,763	+		IAI47_16905	0.51	+1.4
3,585,764	-		IAI47_16905	0.51	-2.7
3,585,764	-		IAI47_16905	0.51	-1.7
3,585,764	-		IAI47_16905	0.51	+0.0
3,585,764	-		IAI47_16905	0.51	+0.1
3,585,764	-		IAI47_16905	0.51	+0.6
3,585,764	-		IAI47_16905	0.51	-2.4
3,585,767	+		IAI47_16905	0.51	+1.8
3,585,767	+		IAI47_16905	0.51	-0.3
3,585,767	+		IAI47_16905	0.51	+0.7
3,585,767	+		IAI47_16905	0.51	+1.6
3,585,768	-		IAI47_16905	0.51	+1.1
3,585,768	-		IAI47_16905	0.51	+1.7
3,585,768	-		IAI47_16905	0.51	-0.1
3,585,768	-		IAI47_16905	0.51	+0.4
3,585,768	-		IAI47_16905	0.51	+0.6
3,585,768	-		IAI47_16905	0.51	+0.2
3,585,770	+		IAI47_16905	0.51	+1.7
3,585,771	-		IAI47_16905	0.52	-1.9
3,585,771	-		IAI47_16905	0.52	+1.2
3,585,886	+		IAI47_16905	0.58	-0.9
3,585,886	+		IAI47_16905	0.58	+0.4
3,585,887	-		IAI47_16905	0.58	+1.0
3,585,887	-		IAI47_16905	0.58	+1.1
3,585,887	-		IAI47_16905	0.58	+1.5
3,585,896	-		IAI47_16905	0.59	-1.7
3,585,896	-		IAI47_16905	0.59	+0.8
3,585,896	-		IAI47_16905	0.59	-0.6
3,585,904	+		IAI47_16905	0.59	+0.4
3,585,904	+		IAI47_16905	0.59	-1.5
3,585,904	+		IAI47_16905	0.59	+1.3
3,585,905	-		IAI47_16905	0.59	+2.1
3,585,905	-		IAI47_16905	0.59	+1.2
3,585,905	-		IAI47_16905	0.59	+0.3
3,585,905	-		IAI47_16905	0.59	+0.2
3,585,905	-		IAI47_16905	0.59	-1.7
3,585,905	-		IAI47_16905	0.59	+1.2
3,585,952	+		IAI47_16905	0.62	+2.9
3,585,952	+		IAI47_16905	0.62	-3.0
3,585,953	-		IAI47_16905	0.62	+0.1
3,585,953	-		IAI47_16905	0.62	-1.8
3,585,971	+		IAI47_16905	0.63	-1.3
3,585,971	+		IAI47_16905	0.63	+0.4
3,585,971	+		IAI47_16905	0.63	-0.3
3,585,972	-		IAI47_16905	0.63	+0.9
3,585,972	-		IAI47_16905	0.63	-0.7
3,585,994	+		IAI47_16905	0.64	-0.5
3,585,995	-		IAI47_16905	0.64	+0.8
3,586,029	-		IAI47_16905	0.66	+1.1
3,586,052	+		IAI47_16905	0.68	+0.3
3,586,052	+		IAI47_16905	0.68	+0.6
3,586,052	+		IAI47_16905	0.68	+3.5
3,586,052	+		IAI47_16905	0.68	-1.4
3,586,052	+		IAI47_16905	0.68	-1.0
3,586,052	+		IAI47_16905	0.68	+3.8
3,586,052	+		IAI47_16905	0.68	+0.6
3,586,052	+		IAI47_16905	0.68	+1.3
3,586,053	-		IAI47_16905	0.68	-1.1
3,586,053	-		IAI47_16905	0.68	-0.8
3,586,053	-		IAI47_16905	0.68	-2.9
3,586,064	+		IAI47_16905	0.68	+0.1
3,586,114	+		IAI47_16905	0.71	+0.5
3,586,166	+		IAI47_16905	0.74	+1.1
3,586,166	+		IAI47_16905	0.74	-1.3
3,586,166	+		IAI47_16905	0.74	+0.2
3,586,167	-		IAI47_16905	0.74	+0.3
3,586,167	-		IAI47_16905	0.74	+0.4
3,586,167	-		IAI47_16905	0.74	+0.2
3,586,167	-		IAI47_16905	0.74	+2.4
3,586,169	+		IAI47_16905	0.74	+2.0
3,586,169	+		IAI47_16905	0.74	-0.7
3,586,169	+		IAI47_16905	0.74	+0.6
3,586,170	-		IAI47_16905	0.74	-1.4
3,586,207	+		IAI47_16905	0.77	+2.3
3,586,208	-		IAI47_16905	0.77	-0.4
3,586,208	-		IAI47_16905	0.77	-1.4
3,586,208	-		IAI47_16905	0.77	+0.5
3,586,208	-		IAI47_16905	0.77	-1.9
3,586,208	-		IAI47_16905	0.77	+0.1
3,586,268	+		IAI47_16905	0.80	-0.0
3,586,268	+		IAI47_16905	0.80	+0.5
3,586,268	+		IAI47_16905	0.80	-1.1
3,586,269	-		IAI47_16905	0.80	+1.0
3,586,269	-		IAI47_16905	0.80	-0.4
3,586,269	-		IAI47_16905	0.80	+0.7
3,586,285	+		IAI47_16905	0.81	+2.8
3,586,295	+		IAI47_16905	0.82	+0.6
3,586,295	+		IAI47_16905	0.82	-0.6
3,586,316	+		IAI47_16905	0.83	-1.5
3,586,317	-		IAI47_16905	0.83	+0.0
3,586,367	+		IAI47_16905	0.86	+1.0
3,586,368	-		IAI47_16905	0.86	+0.2
3,586,389	-		IAI47_16905	0.87	+1.8
3,586,430	+		IAI47_16905	0.89	+1.3
3,586,431	-		IAI47_16905	0.89	-1.4
3,586,431	-		IAI47_16905	0.89	-2.2
3,586,562	+				+0.4
3,586,562	+				-2.0
3,586,575	+				-1.2
3,586,576	-				+0.1
3,586,576	-				+0.4
3,586,576	-				+0.1
3,586,594	-				+1.0
3,586,633	+				+3.1
3,586,634	-				+0.8
3,586,660	+				+1.9
3,586,660	+				-1.3
3,586,660	+				+1.5
3,586,661	-				-0.2
3,586,662	+				-0.2
3,586,662	+				+0.3
3,586,662	+				-1.3
3,586,663	-				-2.2
3,586,663	-				+0.9
3,586,663	-				-0.9
3,586,680	+				+1.1
3,586,680	+				-2.9
3,586,680	+				+0.2
3,586,681	-				-0.5
3,586,681	-				+0.1
3,586,681	-				+1.8
3,586,681	-				+3.1
3,586,681	-				+0.1
3,586,681	-				+0.3
3,586,681	-				-0.4
3,586,681	-				+1.1
3,586,682	+				+1.3
3,586,683	-				-0.0
3,586,683	-				+2.4
3,586,683	-				+1.0
3,586,698	+				+0.2
3,586,699	-				+0.9
3,586,699	-				+0.8
3,586,762	+				-1.0
3,586,762	+				-3.3
3,586,762	+				+0.1
3,586,763	-				+2.5
3,586,763	-				-0.8
3,586,763	-				-2.4
3,586,777	-				+0.3
3,586,777	-				+1.8
3,586,796	+				+0.3
3,586,796	+				+0.8
3,586,796	+				-0.4
3,586,796	+				-1.9
3,586,796	+				+0.1
3,586,796	+				+0.2
3,586,797	-				+0.2
3,586,797	-				+1.1
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3,586,816	+				-1.8
3,586,816	+				+2.4
3,586,816	+				-2.7
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3,586,817	-				+0.7
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3,586,829	+				-0.0
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3,587,064	+				+1.0
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3,587,195	+		IAI47_16910	0.13	-0.3
3,587,195	+		IAI47_16910	0.13	+0.3
3,587,195	+		IAI47_16910	0.13	-2.1
3,587,195	+		IAI47_16910	0.13	-3.0
3,587,196	-		IAI47_16910	0.13	-2.9
3,587,220	+		IAI47_16910	0.14	+0.5
3,587,220	+		IAI47_16910	0.14	+1.1
3,587,261	-		IAI47_16910	0.16	+0.1
3,587,300	+		IAI47_16910	0.18	+1.2
3,587,301	-		IAI47_16910	0.18	+0.5
3,587,378	+		IAI47_16910	0.21	+0.9
3,587,378	+		IAI47_16910	0.21	-0.5
3,587,379	-		IAI47_16910	0.21	+1.9
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3,587,467	-		IAI47_16910	0.25	-1.0
3,587,467	-		IAI47_16910	0.25	+0.7
3,587,467	-		IAI47_16910	0.25	+0.0
3,587,475	-		IAI47_16910	0.26	-1.4
3,587,475	-		IAI47_16910	0.26	+0.4
3,587,580	-		IAI47_16910	0.30	-0.1
3,587,580	-		IAI47_16910	0.30	+0.1
3,587,580	-		IAI47_16910	0.30	-0.1