Strain Fitness in Pantoea sp. MT58 around IAI47_09965

Experiment: Survival; Treatment=UGA synthetic gw pH4.4; TreatmentDuration=0.5hrs; Outgrowth=LBkan50

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Survival; Treatment=UGA synthetic gw pH4.4; TreatmentDuration=0.5hrs; Outgrowth=LBkan50
2,108,261	+		IAI47_09960	0.15	-1.8
2,108,261	+		IAI47_09960	0.15	+1.6
2,108,294	+		IAI47_09960	0.18	-1.2
2,108,294	+		IAI47_09960	0.18	-0.9
2,108,295	-		IAI47_09960	0.18	+1.4
2,108,330	+		IAI47_09960	0.21	-0.2
2,108,330	+		IAI47_09960	0.21	-0.9
2,108,331	-		IAI47_09960	0.21	+0.8
2,108,331	-		IAI47_09960	0.21	+1.6
2,108,344	+		IAI47_09960	0.22	-1.9
2,108,344	+		IAI47_09960	0.22	-0.2
2,108,344	+		IAI47_09960	0.22	+0.2
2,108,393	+		IAI47_09960	0.27	-0.6
2,108,394	-		IAI47_09960	0.27	+0.4
2,108,417	+		IAI47_09960	0.29	+0.8
2,108,418	-		IAI47_09960	0.29	+1.1
2,108,488	+		IAI47_09960	0.35	-0.7
2,108,489	-		IAI47_09960	0.35	-2.1
2,108,489	-		IAI47_09960	0.35	-1.4
2,108,508	+		IAI47_09960	0.37	-0.4
2,108,508	+		IAI47_09960	0.37	-0.7
2,108,508	+		IAI47_09960	0.37	+0.1
2,108,509	-		IAI47_09960	0.37	-2.3
2,108,509	-		IAI47_09960	0.37	+0.5
2,108,509	-		IAI47_09960	0.37	+0.1
2,108,509	-		IAI47_09960	0.37	-2.1
2,108,526	-		IAI47_09960	0.39	+1.4
2,108,526	-		IAI47_09960	0.39	+3.4
2,108,526	-		IAI47_09960	0.39	+1.5
2,108,563	+		IAI47_09960	0.42	+2.7
2,108,609	+		IAI47_09960	0.46	-1.4
2,108,609	+		IAI47_09960	0.46	+2.0
2,108,694	+		IAI47_09960	0.54	+0.1
2,108,695	-		IAI47_09960	0.54	+4.8
2,108,695	-		IAI47_09960	0.54	+1.5
2,108,695	-		IAI47_09960	0.54	+0.7
2,108,877	+		IAI47_09960	0.71	+0.9
2,108,878	-		IAI47_09960	0.71	+1.1
2,108,878	-		IAI47_09960	0.71	-1.8
2,108,878	-		IAI47_09960	0.71	-3.1
2,108,879	+		IAI47_09960	0.71	+0.4
2,108,879	+		IAI47_09960	0.71	+2.4
2,108,879	+		IAI47_09960	0.71	+0.3
2,108,879	+		IAI47_09960	0.71	+0.9
2,108,937	+		IAI47_09960	0.76	-2.1
2,108,938	-		IAI47_09960	0.76	-0.9
2,108,961	-		IAI47_09960	0.78	-0.1
2,109,001	+		IAI47_09960	0.82	-0.4
2,109,002	-		IAI47_09960	0.82	-0.6
2,109,002	-		IAI47_09960	0.82	+1.4
2,109,002	-		IAI47_09960	0.82	-1.4
2,109,081	+		IAI47_09960	0.89	+0.8
2,109,081	+		IAI47_09960	0.89	-0.2
2,109,082	-		IAI47_09960	0.89	+0.4
2,109,147	+				+2.4
2,109,148	-				-2.4
2,109,148	-				+1.6
2,109,172	+				+0.5
2,109,172	+				+0.4
2,109,173	-				-0.8
2,109,173	-				+0.2
2,109,281	+				-2.5
2,109,281	+				+1.1
2,109,281	+				-0.8
2,109,281	+				+0.7
2,109,281	+				-0.9
2,109,281	+				-1.3
2,109,281	+				+1.2
2,109,281	+				-1.4
2,109,282	-				+0.2
2,109,282	-				-0.2
2,109,282	-				-0.9
2,109,282	-				+0.2
2,109,282	-				-1.4
2,109,282	-				-1.6
2,109,325	-		IAI47_09965	0.14	-0.9
2,109,325	-		IAI47_09965	0.14	-0.2
2,109,325	-		IAI47_09965	0.14	-1.2
2,109,352	-		IAI47_09965	0.19	-2.2
2,109,352	-		IAI47_09965	0.19	+0.8
2,109,360	-		IAI47_09965	0.20	+1.4
2,109,415	+		IAI47_09965	0.29	-1.4
2,109,426	-		IAI47_09965	0.31	+0.2
2,109,426	-		IAI47_09965	0.31	+1.4
2,109,426	-		IAI47_09965	0.31	-1.9
2,109,533	+		IAI47_09965	0.50	+0.4
2,109,533	+		IAI47_09965	0.50	+1.4
2,109,533	+		IAI47_09965	0.50	+1.8
2,109,533	+		IAI47_09965	0.50	+0.6
2,109,651	-		IAI47_09965	0.70	+0.5
2,109,660	-		IAI47_09965	0.71	-0.8
2,109,661	+		IAI47_09965	0.71	+2.4
2,109,661	+		IAI47_09965	0.71	+0.3
2,109,661	+		IAI47_09965	0.71	-0.7
2,109,661	+		IAI47_09965	0.71	-2.0
2,109,661	+		IAI47_09965	0.71	-0.8
2,109,661	+		IAI47_09965	0.71	+5.2
2,109,661	+		IAI47_09965	0.71	-0.2
2,109,662	-		IAI47_09965	0.72	-0.2
2,109,662	-		IAI47_09965	0.72	+3.7
2,109,662	-		IAI47_09965	0.72	+1.4
2,109,662	-		IAI47_09965	0.72	+1.4
2,109,662	-		IAI47_09965	0.72	+1.0
2,109,694	+		IAI47_09965	0.77	+0.2
2,109,694	+		IAI47_09965	0.77	+1.4
2,109,694	+		IAI47_09965	0.77	-0.2
2,109,749	+		IAI47_09965	0.86	-1.5
2,109,749	+		IAI47_09965	0.86	-1.1
2,109,749	+		IAI47_09965	0.86	+0.7
2,109,750	-		IAI47_09965	0.87	+3.7
2,109,750	-		IAI47_09965	0.87	-0.6
2,109,750	-		IAI47_09965	0.87	+2.4
2,109,751	+		IAI47_09965	0.87	-1.2
2,109,751	+		IAI47_09965	0.87	-2.2
2,109,752	-		IAI47_09965	0.87	+1.8
2,109,752	-		IAI47_09965	0.87	+0.6
2,109,752	-		IAI47_09965	0.87	+1.0
2,109,752	-		IAI47_09965	0.87	-0.1
2,109,752	-		IAI47_09965	0.87	-1.1
2,109,765	-		IAI47_09965	0.89	-0.4
2,109,766	+		IAI47_09965	0.89	+1.5
2,109,766	+		IAI47_09965	0.89	+2.0
2,109,767	-		IAI47_09965	0.90	-1.8
2,109,767	-		IAI47_09965	0.90	+0.4
2,109,773	+				+0.5
2,109,774	-				-1.6
2,109,774	-				+0.4
2,109,774	-				-2.4
2,109,863	-				-0.2
2,109,916	-				+2.5
2,109,969	+				+0.2
2,109,969	+				-0.9
2,109,970	-				-0.9
2,109,970	-				-2.9
2,110,053	+		IAI47_09970	0.19	-0.1
2,110,053	+		IAI47_09970	0.19	-1.6
2,110,054	-		IAI47_09970	0.19	+1.0
2,110,147	+		IAI47_09970	0.31	-0.9
2,110,195	-		IAI47_09970	0.38	+3.2
2,110,195	-		IAI47_09970	0.38	+2.0
2,110,227	+		IAI47_09970	0.42	-0.6
2,110,255	+		IAI47_09970	0.46	+1.1
2,110,320	+		IAI47_09970	0.55	+2.4
2,110,320	+		IAI47_09970	0.55	-0.3
2,110,320	+		IAI47_09970	0.55	-2.6
2,110,320	+		IAI47_09970	0.55	-1.9
2,110,321	-		IAI47_09970	0.55	-2.1
2,110,321	-		IAI47_09970	0.55	+1.4
2,110,321	-		IAI47_09970	0.55	+1.9
2,110,340	+		IAI47_09970	0.57	-0.9
2,110,340	+		IAI47_09970	0.57	+0.5
2,110,340	+		IAI47_09970	0.57	+1.1
2,110,340	+		IAI47_09970	0.57	-2.2
2,110,341	-		IAI47_09970	0.57	+1.0
2,110,341	-		IAI47_09970	0.57	+0.7
2,110,342	+		IAI47_09970	0.57	-1.6
2,110,342	+		IAI47_09970	0.57	+1.1
2,110,342	+		IAI47_09970	0.57	-1.2
2,110,372	+		IAI47_09970	0.61	+2.8
2,110,372	+		IAI47_09970	0.61	+1.1
2,110,372	+		IAI47_09970	0.61	+0.7
2,110,372	+		IAI47_09970	0.61	-1.1
2,110,372	+		IAI47_09970	0.61	-0.2
2,110,373	-		IAI47_09970	0.62	-0.2
2,110,373	-		IAI47_09970	0.62	+0.2
2,110,373	-		IAI47_09970	0.62	+1.9
2,110,396	+		IAI47_09970	0.65	-0.4
2,110,415	-		IAI47_09970	0.67	+0.1
2,110,585	+		IAI47_09970	0.90	-1.9
2,110,585	+		IAI47_09970	0.90	-1.3
2,110,687	+				-1.2
2,110,783	+		IAI47_09975	0.25	+0.2
2,110,784	-		IAI47_09975	0.25	+1.1
2,110,784	-		IAI47_09975	0.25	+0.3
2,110,819	+		IAI47_09975	0.32	+0.5
2,110,819	+		IAI47_09975	0.32	-1.8
2,110,819	+		IAI47_09975	0.32	+0.1
2,110,819	+		IAI47_09975	0.32	-1.2