Strain Fitness in Bifidobacterium breve UCC2003 around BBR_RS13200

Experiment: Recovery broth with Cerulenin 0.9 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntBBR_RS13195 and BBR_RS13200 are separated by 26 nucleotidesBBR_RS13200 and BBR_RS13205 are separated by 57 nucleotides BBR_RS13195: BBR_RS13195 - pyridoxal 5'-phosphate synthase lyase subunit PdxS, at 736,662 to 737,537 _RS13195 BBR_RS13200: BBR_RS13200 - pyridoxal 5'-phosphate synthase glutaminase subunit PdxT, at 737,564 to 738,202 _RS13200 BBR_RS13205: BBR_RS13205 - PLP-dependent aminotransferase family protein, at 738,260 to 739,783 _RS13205 Position (kb) 737 738 739Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 736.587 kb on + strandat 736.587 kb on + strandat 736.587 kb on + strandat 736.595 kb on - strandat 736.598 kb on + strandat 736.600 kb on - strandat 736.632 kb on + strandat 736.638 kb on - strandat 736.640 kb on + strandat 736.647 kb on + strandat 736.788 kb on - strand, within BBR_RS13195at 736.851 kb on + strand, within BBR_RS13195at 736.856 kb on + strand, within BBR_RS13195at 736.864 kb on - strand, within BBR_RS13195at 737.001 kb on - strand, within BBR_RS13195at 737.005 kb on - strand, within BBR_RS13195at 737.049 kb on + strand, within BBR_RS13195at 737.058 kb on - strand, within BBR_RS13195at 737.062 kb on - strand, within BBR_RS13195at 737.088 kb on + strand, within BBR_RS13195at 737.137 kb on - strand, within BBR_RS13195at 737.212 kb on + strand, within BBR_RS13195at 737.233 kb on - strand, within BBR_RS13195at 737.239 kb on - strand, within BBR_RS13195at 737.277 kb on + strand, within BBR_RS13195at 737.298 kb on + strand, within BBR_RS13195at 737.335 kb on - strand, within BBR_RS13195at 737.361 kb on + strand, within BBR_RS13195at 737.370 kb on + strand, within BBR_RS13195at 737.437 kb on + strand, within BBR_RS13195at 737.437 kb on + strand, within BBR_RS13195at 737.445 kb on - strand, within BBR_RS13195at 737.513 kb on + strandat 737.547 kb on + strandat 737.557 kb on + strandat 737.560 kb on - strandat 737.584 kb on - strandat 737.616 kb on - strandat 737.642 kb on - strand, within BBR_RS13200at 737.653 kb on - strand, within BBR_RS13200at 737.830 kb on + strand, within BBR_RS13200at 737.830 kb on + strand, within BBR_RS13200at 737.830 kb on + strand, within BBR_RS13200at 737.830 kb on + strand, within BBR_RS13200at 737.830 kb on + strand, within BBR_RS13200at 737.830 kb on + strand, within BBR_RS13200at 737.838 kb on - strand, within BBR_RS13200at 737.928 kb on + strand, within BBR_RS13200at 737.931 kb on + strand, within BBR_RS13200at 737.948 kb on + strand, within BBR_RS13200at 737.948 kb on + strand, within BBR_RS13200at 737.955 kb on + strand, within BBR_RS13200at 737.955 kb on + strand, within BBR_RS13200at 737.955 kb on - strand, within BBR_RS13200at 737.963 kb on - strand, within BBR_RS13200at 737.963 kb on - strand, within BBR_RS13200at 738.006 kb on + strand, within BBR_RS13200at 738.033 kb on - strand, within BBR_RS13200at 738.035 kb on + strand, within BBR_RS13200at 738.035 kb on + strand, within BBR_RS13200at 738.077 kb on - strand, within BBR_RS13200at 738.091 kb on - strand, within BBR_RS13200at 738.091 kb on - strand, within BBR_RS13200at 738.131 kb on + strand, within BBR_RS13200at 738.223 kb on - strandat 738.223 kb on - strandat 738.226 kb on + strandat 738.255 kb on + strandat 738.278 kb on - strandat 738.288 kb on - strandat 738.288 kb on - strandat 738.293 kb on - strandat 738.296 kb on - strandat 738.312 kb on + strandat 738.312 kb on + strandat 738.381 kb on + strandat 738.401 kb on - strandat 738.409 kb on - strandat 738.422 kb on - strand, within BBR_RS13205at 738.424 kb on - strand, within BBR_RS13205at 738.431 kb on - strand, within BBR_RS13205at 738.517 kb on + strand, within BBR_RS13205at 738.520 kb on - strand, within BBR_RS13205at 738.539 kb on - strand, within BBR_RS13205at 738.587 kb on + strand, within BBR_RS13205at 738.595 kb on - strand, within BBR_RS13205at 738.649 kb on - strand, within BBR_RS13205at 738.740 kb on - strand, within BBR_RS13205at 738.740 kb on - strand, within BBR_RS13205at 738.828 kb on - strand, within BBR_RS13205at 738.836 kb on + strand, within BBR_RS13205at 738.860 kb on - strand, within BBR_RS13205at 738.879 kb on - strand, within BBR_RS13205at 738.879 kb on - strand, within BBR_RS13205at 738.937 kb on - strand, within BBR_RS13205at 739.024 kb on - strand, within BBR_RS13205at 739.075 kb on + strand, within BBR_RS13205at 739.083 kb on - strand, within BBR_RS13205at 739.083 kb on - strand, within BBR_RS13205at 739.085 kb on + strand, within BBR_RS13205at 739.093 kb on - strand, within BBR_RS13205at 739.093 kb on - strand, within BBR_RS13205at 739.176 kb on - strand, within BBR_RS13205

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Per-strain Table

Position Strand Gene LocusTag Fraction Recovery broth with Cerulenin 0.9 mM
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736,587 + +0.3
736,587 + +1.0
736,587 + -0.3
736,595 - -0.1
736,598 + +1.7
736,600 - -1.3
736,632 + +0.8
736,638 - +1.0
736,640 + -3.2
736,647 + +0.8
736,788 - BBR_RS13195 0.14 -1.2
736,851 + BBR_RS13195 0.22 -0.1
736,856 + BBR_RS13195 0.22 +0.3
736,864 - BBR_RS13195 0.23 +0.4
737,001 - BBR_RS13195 0.39 +1.3
737,005 - BBR_RS13195 0.39 +0.3
737,049 + BBR_RS13195 0.44 +0.7
737,058 - BBR_RS13195 0.45 -0.8
737,062 - BBR_RS13195 0.46 +0.7
737,088 + BBR_RS13195 0.49 +0.7
737,137 - BBR_RS13195 0.54 +0.8
737,212 + BBR_RS13195 0.63 +1.0
737,233 - BBR_RS13195 0.65 +0.2
737,239 - BBR_RS13195 0.66 +0.1
737,277 + BBR_RS13195 0.70 +0.1
737,298 + BBR_RS13195 0.73 +0.3
737,335 - BBR_RS13195 0.77 -0.1
737,361 + BBR_RS13195 0.80 +1.0
737,370 + BBR_RS13195 0.81 +0.5
737,437 + BBR_RS13195 0.88 +1.3
737,437 + BBR_RS13195 0.88 +1.6
737,445 - BBR_RS13195 0.89 -0.9
737,513 + +0.4
737,547 + +0.1
737,557 + -0.1
737,560 - -0.3
737,584 - +0.9
737,616 - +0.7
737,642 - BBR_RS13200 0.12 +0.3
737,653 - BBR_RS13200 0.14 +0.2
737,830 + BBR_RS13200 0.42 +0.2
737,830 + BBR_RS13200 0.42 +0.1
737,830 + BBR_RS13200 0.42 +1.0
737,830 + BBR_RS13200 0.42 +0.4
737,830 + BBR_RS13200 0.42 +0.5
737,830 + BBR_RS13200 0.42 +0.9
737,838 - BBR_RS13200 0.43 +0.9
737,928 + BBR_RS13200 0.57 +1.6
737,931 + BBR_RS13200 0.57 +0.5
737,948 + BBR_RS13200 0.60 +2.4
737,948 + BBR_RS13200 0.60 +0.6
737,955 + BBR_RS13200 0.61 +0.7
737,955 + BBR_RS13200 0.61 +0.8
737,955 - BBR_RS13200 0.61 +0.2
737,963 - BBR_RS13200 0.62 +0.6
737,963 - BBR_RS13200 0.62 -0.0
738,006 + BBR_RS13200 0.69 -0.1
738,033 - BBR_RS13200 0.73 +1.1
738,035 + BBR_RS13200 0.74 +0.1
738,035 + BBR_RS13200 0.74 +0.6
738,077 - BBR_RS13200 0.80 -0.2
738,091 - BBR_RS13200 0.82 +0.6
738,091 - BBR_RS13200 0.82 -0.0
738,131 + BBR_RS13200 0.89 +0.5
738,223 - +0.2
738,223 - +0.8
738,226 + +1.0
738,255 + -0.4
738,278 - +0.3
738,288 - +0.8
738,288 - +0.3
738,293 - -0.0
738,296 - +1.0
738,312 + -0.7
738,312 + +0.3
738,381 + -0.2
738,401 - +0.2
738,409 - -0.3
738,422 - BBR_RS13205 0.11 +0.7
738,424 - BBR_RS13205 0.11 +1.2
738,431 - BBR_RS13205 0.11 +1.3
738,517 + BBR_RS13205 0.17 +0.4
738,520 - BBR_RS13205 0.17 -1.0
738,539 - BBR_RS13205 0.18 +0.1
738,587 + BBR_RS13205 0.21 -0.1
738,595 - BBR_RS13205 0.22 -0.2
738,649 - BBR_RS13205 0.26 +0.2
738,740 - BBR_RS13205 0.31 +0.4
738,740 - BBR_RS13205 0.31 +0.3
738,828 - BBR_RS13205 0.37 +0.0
738,836 + BBR_RS13205 0.38 +0.2
738,860 - BBR_RS13205 0.39 +0.5
738,879 - BBR_RS13205 0.41 +0.5
738,879 - BBR_RS13205 0.41 +0.5
738,937 - BBR_RS13205 0.44 +0.2
739,024 - BBR_RS13205 0.50 +0.4
739,075 + BBR_RS13205 0.53 +0.1
739,083 - BBR_RS13205 0.54 +0.5
739,083 - BBR_RS13205 0.54 -0.3
739,085 + BBR_RS13205 0.54 +1.6
739,093 - BBR_RS13205 0.55 +0.4
739,093 - BBR_RS13205 0.55 -0.2
739,176 - BBR_RS13205 0.60 +0.0

Or see this region's nucleotide sequence