Strain Fitness in Dinoroseobacter shibae DFL-12 around Dshi_2640

Experiment: Adenine (N)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDshi_2639 and Dshi_2640 are separated by 114 nucleotidesDshi_2640 and Dshi_2641 are separated by 113 nucleotidesDshi_2641 and Dshi_2642 overlap by 4 nucleotides Dshi_2639: Dshi_2639 - carbamoyl-phosphate synthase, large subunit (RefSeq), at 2,794,515 to 2,797,832 _2639 Dshi_2640: Dshi_2640 - hypothetical protein (RefSeq), at 2,797,947 to 2,798,738 _2640 Dshi_2641: Dshi_2641 - Thymidine kinase (RefSeq), at 2,798,852 to 2,799,451 _2641 Dshi_2642: Dshi_2642 - hypothetical protein (RefSeq), at 2,799,448 to 2,800,284 _2642 Position (kb) 2797 2798 2799Strain fitness (log2 ratio) -2 -1 0 1at 2797.868 kb on - strandat 2797.868 kb on - strandat 2798.093 kb on + strand, within Dshi_2640at 2798.182 kb on - strand, within Dshi_2640at 2798.558 kb on + strand, within Dshi_2640at 2798.571 kb on - strand, within Dshi_2640at 2798.677 kb on + strandat 2798.677 kb on + strandat 2798.685 kb on - strandat 2798.687 kb on + strandat 2799.085 kb on + strand, within Dshi_2641at 2799.192 kb on - strand, within Dshi_2641at 2799.367 kb on + strand, within Dshi_2641at 2799.446 kb on + strandat 2799.454 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Adenine (N)
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2,797,868 - +0.5
2,797,868 - +0.5
2,798,093 + Dshi_2640 0.18 -1.0
2,798,182 - Dshi_2640 0.30 -0.5
2,798,558 + Dshi_2640 0.77 -0.2
2,798,571 - Dshi_2640 0.79 -0.3
2,798,677 + -2.4
2,798,677 + -0.4
2,798,685 - -0.3
2,798,687 + +0.7
2,799,085 + Dshi_2641 0.39 -0.2
2,799,192 - Dshi_2641 0.57 -1.4
2,799,367 + Dshi_2641 0.86 -0.2
2,799,446 + +0.1
2,799,454 - -0.1

Or see this region's nucleotide sequence