Strain Fitness in Dinoroseobacter shibae DFL-12 around Dshi_0215

Experiment: Adenine (N)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDshi_0214 and Dshi_0215 are separated by 160 nucleotidesDshi_0215 and Dshi_0216 are separated by 66 nucleotidesDshi_0216 and Dshi_0217 overlap by 1 nucleotides Dshi_0214: Dshi_0214 - 3-hydroxybutyryl-CoA dehydrogenase (RefSeq), at 212,131 to 213,006 _0214 Dshi_0215: Dshi_0215 - hypothetical protein (RefSeq), at 213,167 to 214,024 _0215 Dshi_0216: Dshi_0216 - Electron transfer flavoprotein alpha subunit (RefSeq), at 214,091 to 215,017 _0216 Dshi_0217: Dshi_0217 - Electron transfer flavoprotein alpha/beta-subunit (RefSeq), at 215,017 to 215,775 _0217 Position (kb) 213 214 215Strain fitness (log2 ratio) -2 -1 0 1 2at 212.388 kb on - strand, within Dshi_0214at 212.416 kb on + strand, within Dshi_0214at 212.602 kb on - strand, within Dshi_0214at 212.767 kb on - strand, within Dshi_0214at 212.778 kb on + strand, within Dshi_0214at 212.778 kb on + strand, within Dshi_0214at 212.886 kb on + strand, within Dshi_0214at 212.894 kb on - strand, within Dshi_0214at 212.920 kb on - strandat 212.922 kb on + strandat 212.929 kb on + strandat 212.929 kb on + strandat 212.929 kb on + strandat 213.003 kb on - strandat 213.012 kb on + strandat 213.013 kb on + strandat 213.020 kb on - strandat 213.034 kb on + strandat 213.035 kb on + strandat 213.135 kb on + strandat 213.179 kb on + strandat 213.187 kb on - strandat 213.246 kb on - strandat 213.254 kb on - strand, within Dshi_0215at 213.259 kb on - strand, within Dshi_0215at 213.268 kb on - strand, within Dshi_0215at 213.272 kb on + strand, within Dshi_0215at 213.344 kb on - strand, within Dshi_0215at 213.346 kb on + strand, within Dshi_0215at 213.353 kb on + strand, within Dshi_0215at 213.361 kb on - strand, within Dshi_0215at 213.413 kb on - strand, within Dshi_0215at 213.449 kb on - strand, within Dshi_0215at 213.535 kb on - strand, within Dshi_0215at 213.561 kb on + strand, within Dshi_0215at 213.684 kb on - strand, within Dshi_0215at 213.696 kb on + strand, within Dshi_0215at 213.978 kb on + strandat 214.012 kb on - strandat 214.032 kb on - strandat 214.073 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Adenine (N)
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212,388 - Dshi_0214 0.29 +1.7
212,416 + Dshi_0214 0.33 +0.5
212,602 - Dshi_0214 0.54 +2.4
212,767 - Dshi_0214 0.73 -1.0
212,778 + Dshi_0214 0.74 -0.3
212,778 + Dshi_0214 0.74 -0.8
212,886 + Dshi_0214 0.86 +0.7
212,894 - Dshi_0214 0.87 -0.8
212,920 - +1.7
212,922 + -0.6
212,929 + +0.0
212,929 + -0.8
212,929 + -0.6
213,003 - -0.4
213,012 + +0.6
213,013 + -0.7
213,020 - -0.4
213,034 + -0.5
213,035 + -0.2
213,135 + +0.3
213,179 + +0.3
213,187 - -2.7
213,246 - -0.0
213,254 - Dshi_0215 0.10 +0.0
213,259 - Dshi_0215 0.11 -0.4
213,268 - Dshi_0215 0.12 -0.1
213,272 + Dshi_0215 0.12 -0.2
213,344 - Dshi_0215 0.21 +0.1
213,346 + Dshi_0215 0.21 -0.7
213,353 + Dshi_0215 0.22 -0.7
213,361 - Dshi_0215 0.23 +0.3
213,413 - Dshi_0215 0.29 +0.5
213,449 - Dshi_0215 0.33 +1.0
213,535 - Dshi_0215 0.43 -0.0
213,561 + Dshi_0215 0.46 -0.2
213,684 - Dshi_0215 0.60 -0.5
213,696 + Dshi_0215 0.62 -0.3
213,978 + -0.2
214,012 - +0.2
214,032 - -0.2
214,073 - -0.1

Or see this region's nucleotide sequence