Strain Fitness in Desulfovibrio vulgaris Hildenborough JW710 around DVU0702

Experiment: MoYLS4 with BPS 20uM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntglcB and DVU0702 are separated by 615 nucleotidesDVU0702 and lepA are separated by 177 nucleotides DVU0701: glcB - malate synthase G (TIGR), at 778,761 to 780,950 glcB DVU0702: DVU0702 - cytochrome c family protein (TIGR), at 781,566 to 782,012 DVU0702 DVU0703: lepA - GTP-binding protein LepA (TIGR), at 782,190 to 783,995 lepA Position (kb) 781 782 783Strain fitness (log2 ratio) -1 0 1 2at 780.588 kb on + strand, within glcBat 780.589 kb on - strand, within glcBat 780.609 kb on + strand, within glcBat 780.617 kb on - strand, within glcBat 780.617 kb on - strand, within glcBat 780.716 kb on + strand, within glcBat 780.811 kb on - strandat 780.916 kb on + strandat 780.930 kb on - strandat 780.945 kb on - strandat 780.989 kb on + strandat 781.065 kb on - strandat 781.070 kb on - strandat 781.151 kb on + strandat 781.193 kb on + strandat 781.230 kb on + strandat 781.238 kb on - strandat 781.330 kb on + strandat 781.389 kb on - strandat 781.391 kb on + strandat 781.399 kb on - strandat 781.463 kb on + strandat 781.677 kb on + strand, within DVU0702at 781.737 kb on - strand, within DVU0702at 781.737 kb on - strand, within DVU0702at 781.867 kb on + strand, within DVU0702at 781.916 kb on + strand, within DVU0702at 781.934 kb on + strand, within DVU0702at 781.944 kb on - strand, within DVU0702at 781.953 kb on + strand, within DVU0702at 781.994 kb on - strandat 782.006 kb on + strandat 782.363 kb on + strandat 782.608 kb on + strand, within lepAat 782.768 kb on + strand, within lepAat 782.880 kb on + strand, within lepA

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Per-strain Table

Position Strand Gene LocusTag Fraction MoYLS4 with BPS 20uM
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780,588 + glcB DVU0701 0.83 -0.9
780,589 - glcB DVU0701 0.83 -0.2
780,609 + glcB DVU0701 0.84 +0.0
780,617 - glcB DVU0701 0.85 +0.3
780,617 - glcB DVU0701 0.85 -0.4
780,716 + glcB DVU0701 0.89 +1.1
780,811 - -0.1
780,916 + -1.3
780,930 - -0.4
780,945 - -0.3
780,989 + +0.2
781,065 - -0.3
781,070 - -0.2
781,151 + -0.0
781,193 + -0.0
781,230 + -0.4
781,238 - -1.6
781,330 + -0.1
781,389 - +0.1
781,391 + -0.1
781,399 - -0.3
781,463 + -0.1
781,677 + DVU0702 0.25 -0.6
781,737 - DVU0702 0.38 -0.8
781,737 - DVU0702 0.38 +0.5
781,867 + DVU0702 0.67 +0.3
781,916 + DVU0702 0.78 -1.0
781,934 + DVU0702 0.82 -0.6
781,944 - DVU0702 0.85 +1.5
781,953 + DVU0702 0.87 +0.3
781,994 - +1.5
782,006 + -0.9
782,363 + -0.5
782,608 + lepA DVU0703 0.23 +0.9
782,768 + lepA DVU0703 0.32 +2.1
782,880 + lepA DVU0703 0.38 -0.1

Or see this region's nucleotide sequence