Strain Fitness in Desulfovibrio vulgaris Hildenborough JW710 around DORF39356

Experiment: MoYLS4 with BPS 20uM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDVU2079 and DORF39356 are separated by 284 nucleotidesDORF39356 and DORF39360 are separated by 69 nucleotidesDORF39360 and DVU2081 are separated by 207 nucleotidesDVU2081 and flaD are separated by 50 nucleotides DVU2079: DVU2079 - sensory box histidine kinase (TIGR), at 2,163,649 to 2,166,084 DVU2079 DORF39356: DORF39356 - no description, at 2,166,369 to 2,166,506 DORF39356 DORF39360: DORF39360 - SEED: FIG00605187: hypothetical protein, at 2,166,576 to 2,166,914 DORF39360 DVU2081: DVU2081 - hypothetical protein (TIGR), at 2,167,122 to 2,167,430 DVU2081 DVU2082: flaD - flagellin, putative (TIGR), at 2,167,481 to 2,168,374 flaD Position (kb) 2166 2167Strain fitness (log2 ratio) -1 0 1at 2165.377 kb on + strand, within DVU2079at 2165.428 kb on + strand, within DVU2079at 2165.447 kb on - strand, within DVU2079at 2165.484 kb on + strand, within DVU2079at 2165.797 kb on + strand, within DVU2079at 2165.887 kb on + strandat 2165.969 kb on - strandat 2166.005 kb on + strandat 2166.031 kb on - strandat 2166.041 kb on - strandat 2166.041 kb on - strandat 2166.041 kb on - strandat 2166.041 kb on - strandat 2166.051 kb on - strandat 2166.053 kb on + strandat 2166.059 kb on - strandat 2166.204 kb on + strandat 2166.204 kb on - strandat 2166.209 kb on + strandat 2166.212 kb on - strandat 2166.219 kb on + strandat 2166.220 kb on + strandat 2166.278 kb on + strandat 2166.396 kb on + strand, within DORF39356at 2166.484 kb on - strand, within DORF39356at 2166.485 kb on + strand, within DORF39356at 2166.565 kb on - strandat 2166.597 kb on + strandat 2166.633 kb on - strand, within DORF39360at 2166.635 kb on - strand, within DORF39360at 2166.638 kb on - strand, within DORF39360at 2166.661 kb on - strand, within DORF39360at 2166.674 kb on - strand, within DORF39360at 2166.679 kb on + strand, within DORF39360at 2166.687 kb on - strand, within DORF39360at 2166.687 kb on - strand, within DORF39360at 2166.719 kb on + strand, within DORF39360at 2166.872 kb on + strand, within DORF39360at 2166.891 kb on + strandat 2166.966 kb on + strandat 2167.005 kb on - strandat 2167.022 kb on + strandat 2167.030 kb on - strandat 2167.050 kb on + strandat 2167.207 kb on - strand, within DVU2081at 2167.354 kb on - strand, within DVU2081at 2167.364 kb on - strand, within DVU2081at 2167.410 kb on - strandat 2167.453 kb on - strandat 2167.461 kb on + strandat 2167.504 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction MoYLS4 with BPS 20uM
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2,165,377 + DVU2079 0.71 -0.3
2,165,428 + DVU2079 0.73 -0.5
2,165,447 - DVU2079 0.74 +0.4
2,165,484 + DVU2079 0.75 +0.0
2,165,797 + DVU2079 0.88 -0.1
2,165,887 + -0.3
2,165,969 - +0.9
2,166,005 + -0.0
2,166,031 - +0.4
2,166,041 - -1.0
2,166,041 - -0.6
2,166,041 - -0.1
2,166,041 - +1.5
2,166,051 - -0.5
2,166,053 + -0.1
2,166,059 - -0.2
2,166,204 + +0.2
2,166,204 - -0.8
2,166,209 + -0.0
2,166,212 - -0.5
2,166,219 + +1.6
2,166,220 + -0.3
2,166,278 + -0.1
2,166,396 + DORF39356 0.20 -0.2
2,166,484 - DORF39356 0.83 -0.5
2,166,485 + DORF39356 0.84 -0.9
2,166,565 - -0.1
2,166,597 + -0.2
2,166,633 - DORF39360 0.17 -0.1
2,166,635 - DORF39360 0.17 +0.1
2,166,638 - DORF39360 0.18 -1.0
2,166,661 - DORF39360 0.25 -0.3
2,166,674 - DORF39360 0.29 +0.2
2,166,679 + DORF39360 0.30 -0.4
2,166,687 - DORF39360 0.33 -1.3
2,166,687 - DORF39360 0.33 +0.5
2,166,719 + DORF39360 0.42 -0.7
2,166,872 + DORF39360 0.87 -0.5
2,166,891 + -1.2
2,166,966 + -0.1
2,167,005 - -0.2
2,167,022 + +0.3
2,167,030 - +0.3
2,167,050 + +1.1
2,167,207 - DVU2081 0.28 +0.4
2,167,354 - DVU2081 0.75 +0.0
2,167,364 - DVU2081 0.78 -0.3
2,167,410 - +0.3
2,167,453 - -0.1
2,167,461 + +0.2
2,167,504 + -1.1

Or see this region's nucleotide sequence