Experiment: MoYLS4 with BPS 20uM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt DVU2079 and DORF39356 are separated by 284 nucleotides DORF39356 and DORF39360 are separated by 69 nucleotides DORF39360 and DVU2081 are separated by 207 nucleotides DVU2081 and flaD are separated by 50 nucleotides
DVU2079: DVU2079 - sensory box histidine kinase (TIGR), at 2,163,649 to 2,166,084
DVU2079
DORF39356: DORF39356 - no description, at 2,166,369 to 2,166,506
DORF39356
DORF39360: DORF39360 - SEED: FIG00605187: hypothetical protein, at 2,166,576 to 2,166,914
DORF39360
DVU2081: DVU2081 - hypothetical protein (TIGR), at 2,167,122 to 2,167,430
DVU2081
DVU2082: flaD - flagellin, putative (TIGR), at 2,167,481 to 2,168,374
flaD
Position (kb)
2166
2167 Strain fitness (log2 ratio)
-1
0
1 at 2165.377 kb on + strand, within DVU2079 at 2165.428 kb on + strand, within DVU2079 at 2165.447 kb on - strand, within DVU2079 at 2165.484 kb on + strand, within DVU2079 at 2165.797 kb on + strand, within DVU2079 at 2165.887 kb on + strand at 2165.969 kb on - strand at 2166.005 kb on + strand at 2166.031 kb on - strand at 2166.041 kb on - strand at 2166.041 kb on - strand at 2166.041 kb on - strand at 2166.041 kb on - strand at 2166.051 kb on - strand at 2166.053 kb on + strand at 2166.059 kb on - strand at 2166.204 kb on + strand at 2166.204 kb on - strand at 2166.209 kb on + strand at 2166.212 kb on - strand at 2166.219 kb on + strand at 2166.220 kb on + strand at 2166.278 kb on + strand at 2166.396 kb on + strand, within DORF39356 at 2166.484 kb on - strand, within DORF39356 at 2166.485 kb on + strand, within DORF39356 at 2166.565 kb on - strand at 2166.597 kb on + strand at 2166.633 kb on - strand, within DORF39360 at 2166.635 kb on - strand, within DORF39360 at 2166.638 kb on - strand, within DORF39360 at 2166.661 kb on - strand, within DORF39360 at 2166.674 kb on - strand, within DORF39360 at 2166.679 kb on + strand, within DORF39360 at 2166.687 kb on - strand, within DORF39360 at 2166.687 kb on - strand, within DORF39360 at 2166.719 kb on + strand, within DORF39360 at 2166.872 kb on + strand, within DORF39360 at 2166.891 kb on + strand at 2166.966 kb on + strand at 2167.005 kb on - strand at 2167.022 kb on + strand at 2167.030 kb on - strand at 2167.050 kb on + strand at 2167.207 kb on - strand, within DVU2081 at 2167.354 kb on - strand, within DVU2081 at 2167.364 kb on - strand, within DVU2081 at 2167.410 kb on - strand at 2167.453 kb on - strand at 2167.461 kb on + strand at 2167.504 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction MoYLS4 with BPS 20uM remove 2,165,377 + DVU2079 0.71 -0.3 2,165,428 + DVU2079 0.73 -0.5 2,165,447 - DVU2079 0.74 +0.4 2,165,484 + DVU2079 0.75 +0.0 2,165,797 + DVU2079 0.88 -0.1 2,165,887 + -0.3 2,165,969 - +0.9 2,166,005 + -0.0 2,166,031 - +0.4 2,166,041 - -1.0 2,166,041 - -0.6 2,166,041 - -0.1 2,166,041 - +1.5 2,166,051 - -0.5 2,166,053 + -0.1 2,166,059 - -0.2 2,166,204 + +0.2 2,166,204 - -0.8 2,166,209 + -0.0 2,166,212 - -0.5 2,166,219 + +1.6 2,166,220 + -0.3 2,166,278 + -0.1 2,166,396 + DORF39356 0.20 -0.2 2,166,484 - DORF39356 0.83 -0.5 2,166,485 + DORF39356 0.84 -0.9 2,166,565 - -0.1 2,166,597 + -0.2 2,166,633 - DORF39360 0.17 -0.1 2,166,635 - DORF39360 0.17 +0.1 2,166,638 - DORF39360 0.18 -1.0 2,166,661 - DORF39360 0.25 -0.3 2,166,674 - DORF39360 0.29 +0.2 2,166,679 + DORF39360 0.30 -0.4 2,166,687 - DORF39360 0.33 -1.3 2,166,687 - DORF39360 0.33 +0.5 2,166,719 + DORF39360 0.42 -0.7 2,166,872 + DORF39360 0.87 -0.5 2,166,891 + -1.2 2,166,966 + -0.1 2,167,005 - -0.2 2,167,022 + +0.3 2,167,030 - +0.3 2,167,050 + +1.1 2,167,207 - DVU2081 0.28 +0.4 2,167,354 - DVU2081 0.75 +0.0 2,167,364 - DVU2081 0.78 -0.3 2,167,410 - +0.3 2,167,453 - -0.1 2,167,461 + +0.2 2,167,504 + -1.1
Or see this region's nucleotide sequence