Strain Fitness in Pseudomonas fluorescens FW300-N2E2 around Pf6N2E2_3811

Experiment: Fluorophosphate 0.125 M

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntPf6N2E2_3809 and Pf6N2E2_3810 are separated by 109 nucleotidesPf6N2E2_3810 and Pf6N2E2_3811 are separated by 294 nucleotidesPf6N2E2_3811 and Pf6N2E2_3812 are separated by 113 nucleotidesPf6N2E2_3812 and Pf6N2E2_3813 are separated by 3 nucleotides Pf6N2E2_3809 - Outer membrane lipoprotein Blc, at 4,438,889 to 4,439,455 _3809 Pf6N2E2_3810 - Phosphonate ABC transporter phosphate-binding periplasmic component (TC 3.A.1.9.1), at 4,439,565 to 4,439,819 _3810 Pf6N2E2_3811 - Methyl-accepting chemotaxis protein, at 4,440,114 to 4,441,994 _3811 Pf6N2E2_3812 - FIG027190: Putative transmembrane protein, at 4,442,108 to 4,442,704 _3812 Pf6N2E2_3813 - Fructose-1,6-bisphosphatase, type I (EC 3.1.3.11), at 4,442,708 to 4,443,718 _3813 Position (kb) 4440 4441 4442Strain fitness (log2 ratio) -2 -1 0 1 2 3 4at 4439.271 kb on + strand, within Pf6N2E2_3809at 4439.271 kb on + strand, within Pf6N2E2_3809at 4439.271 kb on + strand, within Pf6N2E2_3809at 4439.272 kb on - strand, within Pf6N2E2_3809at 4439.272 kb on - strand, within Pf6N2E2_3809at 4439.272 kb on - strand, within Pf6N2E2_3809at 4439.307 kb on + strand, within Pf6N2E2_3809at 4439.307 kb on + strand, within Pf6N2E2_3809at 4439.308 kb on - strand, within Pf6N2E2_3809at 4439.308 kb on - strand, within Pf6N2E2_3809at 4439.308 kb on - strand, within Pf6N2E2_3809at 4439.308 kb on - strand, within Pf6N2E2_3809at 4439.308 kb on - strand, within Pf6N2E2_3809at 4439.332 kb on - strand, within Pf6N2E2_3809at 4439.447 kb on + strandat 4439.459 kb on + strandat 4439.494 kb on + strandat 4439.494 kb on + strandat 4439.495 kb on - strandat 4439.495 kb on - strandat 4439.509 kb on - strandat 4439.525 kb on + strandat 4439.526 kb on - strandat 4439.526 kb on - strandat 4439.526 kb on - strandat 4439.539 kb on + strandat 4439.539 kb on + strandat 4439.539 kb on + strandat 4439.540 kb on - strandat 4439.540 kb on - strandat 4439.540 kb on - strandat 4439.545 kb on + strandat 4439.545 kb on + strandat 4439.546 kb on - strandat 4439.546 kb on - strandat 4439.546 kb on - strandat 4439.566 kb on + strandat 4439.567 kb on - strandat 4439.567 kb on - strandat 4439.611 kb on + strand, within Pf6N2E2_3810at 4439.743 kb on + strand, within Pf6N2E2_3810at 4439.743 kb on + strand, within Pf6N2E2_3810at 4439.744 kb on - strand, within Pf6N2E2_3810at 4439.779 kb on - strand, within Pf6N2E2_3810at 4439.804 kb on + strandat 4439.804 kb on + strandat 4439.805 kb on - strandat 4439.824 kb on + strandat 4439.824 kb on + strandat 4439.824 kb on + strandat 4439.825 kb on - strandat 4439.825 kb on - strandat 4439.825 kb on - strandat 4439.868 kb on + strandat 4439.868 kb on + strandat 4439.868 kb on + strandat 4439.869 kb on - strandat 4439.869 kb on - strandat 4439.869 kb on - strandat 4439.869 kb on - strandat 4439.884 kb on + strandat 4439.912 kb on + strandat 4439.912 kb on + strandat 4439.912 kb on + strandat 4439.913 kb on - strandat 4440.097 kb on + strandat 4440.097 kb on + strandat 4440.097 kb on + strandat 4440.097 kb on + strandat 4440.097 kb on + strandat 4440.098 kb on - strandat 4440.100 kb on + strandat 4440.128 kb on + strandat 4440.195 kb on + strandat 4440.381 kb on + strand, within Pf6N2E2_3811at 4440.382 kb on - strand, within Pf6N2E2_3811at 4440.489 kb on + strand, within Pf6N2E2_3811at 4440.490 kb on - strand, within Pf6N2E2_3811at 4440.490 kb on - strand, within Pf6N2E2_3811at 4440.534 kb on + strand, within Pf6N2E2_3811at 4440.534 kb on + strand, within Pf6N2E2_3811at 4440.534 kb on + strand, within Pf6N2E2_3811at 4440.534 kb on + strand, within Pf6N2E2_3811at 4440.534 kb on + strand, within Pf6N2E2_3811at 4440.534 kb on + strand, within Pf6N2E2_3811at 4440.535 kb on - strand, within Pf6N2E2_3811at 4440.535 kb on - strand, within Pf6N2E2_3811at 4440.535 kb on - strand, within Pf6N2E2_3811at 4440.762 kb on + strand, within Pf6N2E2_3811at 4440.873 kb on + strand, within Pf6N2E2_3811at 4440.873 kb on + strand, within Pf6N2E2_3811at 4440.929 kb on + strand, within Pf6N2E2_3811at 4440.930 kb on - strand, within Pf6N2E2_3811at 4440.930 kb on - strand, within Pf6N2E2_3811at 4441.148 kb on + strand, within Pf6N2E2_3811at 4441.148 kb on + strand, within Pf6N2E2_3811at 4441.148 kb on + strand, within Pf6N2E2_3811at 4441.148 kb on + strand, within Pf6N2E2_3811at 4441.149 kb on - strand, within Pf6N2E2_3811at 4441.149 kb on - strand, within Pf6N2E2_3811at 4441.149 kb on - strand, within Pf6N2E2_3811at 4441.149 kb on - strand, within Pf6N2E2_3811at 4441.391 kb on + strand, within Pf6N2E2_3811at 4441.508 kb on + strand, within Pf6N2E2_3811at 4441.508 kb on + strand, within Pf6N2E2_3811at 4441.784 kb on + strand, within Pf6N2E2_3811at 4441.784 kb on + strand, within Pf6N2E2_3811at 4441.784 kb on + strand, within Pf6N2E2_3811at 4441.785 kb on - strand, within Pf6N2E2_3811at 4441.979 kb on + strandat 4441.980 kb on - strandat 4441.992 kb on + strandat 4441.992 kb on + strandat 4441.992 kb on + strandat 4441.993 kb on - strandat 4442.036 kb on + strandat 4442.095 kb on + strandat 4442.352 kb on + strand, within Pf6N2E2_3812at 4442.352 kb on + strand, within Pf6N2E2_3812at 4442.353 kb on - strand, within Pf6N2E2_3812at 4442.360 kb on + strand, within Pf6N2E2_3812at 4442.360 kb on + strand, within Pf6N2E2_3812at 4442.360 kb on + strand, within Pf6N2E2_3812at 4442.360 kb on + strand, within Pf6N2E2_3812at 4442.360 kb on + strand, within Pf6N2E2_3812at 4442.361 kb on - strand, within Pf6N2E2_3812at 4442.361 kb on - strand, within Pf6N2E2_3812at 4442.709 kb on + strandat 4442.710 kb on - strandat 4442.710 kb on - strandat 4442.710 kb on - strandat 4442.710 kb on - strand

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction Fluorophosphate 0.125 M
remove
4,439,271 + Pf6N2E2_3809 0.67 +1.5
4,439,271 + Pf6N2E2_3809 0.67 -2.1
4,439,271 + Pf6N2E2_3809 0.67 -1.2
4,439,272 - Pf6N2E2_3809 0.68 -1.4
4,439,272 - Pf6N2E2_3809 0.68 -0.1
4,439,272 - Pf6N2E2_3809 0.68 -0.7
4,439,307 + Pf6N2E2_3809 0.74 +0.4
4,439,307 + Pf6N2E2_3809 0.74 +0.4
4,439,308 - Pf6N2E2_3809 0.74 +0.8
4,439,308 - Pf6N2E2_3809 0.74 -0.3
4,439,308 - Pf6N2E2_3809 0.74 +0.6
4,439,308 - Pf6N2E2_3809 0.74 -0.6
4,439,308 - Pf6N2E2_3809 0.74 +0.0
4,439,332 - Pf6N2E2_3809 0.78 -0.4
4,439,447 + +0.9
4,439,459 + +1.0
4,439,494 + -0.1
4,439,494 + +0.8
4,439,495 - -0.3
4,439,495 - +1.2
4,439,509 - -0.2
4,439,525 + -0.9
4,439,526 - -0.1
4,439,526 - -1.0
4,439,526 - -0.2
4,439,539 + -0.2
4,439,539 + +0.4
4,439,539 + +0.9
4,439,540 - -1.0
4,439,540 - -0.6
4,439,540 - +1.2
4,439,545 + -0.8
4,439,545 + -0.4
4,439,546 - +0.4
4,439,546 - +0.4
4,439,546 - +0.3
4,439,566 + -0.9
4,439,567 - +1.2
4,439,567 - -0.1
4,439,611 + Pf6N2E2_3810 0.18 +0.2
4,439,743 + Pf6N2E2_3810 0.70 -1.1
4,439,743 + Pf6N2E2_3810 0.70 +0.8
4,439,744 - Pf6N2E2_3810 0.70 -0.3
4,439,779 - Pf6N2E2_3810 0.84 -1.2
4,439,804 + -0.5
4,439,804 + -2.6
4,439,805 - +1.9
4,439,824 + -1.0
4,439,824 + -0.1
4,439,824 + +1.4
4,439,825 - -0.4
4,439,825 - +0.4
4,439,825 - -0.5
4,439,868 + +0.3
4,439,868 + +0.0
4,439,868 + -2.0
4,439,869 - -0.6
4,439,869 - -0.0
4,439,869 - +0.0
4,439,869 - +0.0
4,439,884 + +1.4
4,439,912 + +0.1
4,439,912 + +0.0
4,439,912 + -0.6
4,439,913 - -0.1
4,440,097 + +0.4
4,440,097 + +1.5
4,440,097 + +0.1
4,440,097 + +4.0
4,440,097 + +0.7
4,440,098 - +0.3
4,440,100 + +0.6
4,440,128 + -0.6
4,440,195 + +0.1
4,440,381 + Pf6N2E2_3811 0.14 +0.8
4,440,382 - Pf6N2E2_3811 0.14 +0.6
4,440,489 + Pf6N2E2_3811 0.20 -0.3
4,440,490 - Pf6N2E2_3811 0.20 -0.4
4,440,490 - Pf6N2E2_3811 0.20 -0.1
4,440,534 + Pf6N2E2_3811 0.22 -0.4
4,440,534 + Pf6N2E2_3811 0.22 -1.0
4,440,534 + Pf6N2E2_3811 0.22 -0.1
4,440,534 + Pf6N2E2_3811 0.22 +0.7
4,440,534 + Pf6N2E2_3811 0.22 +1.0
4,440,534 + Pf6N2E2_3811 0.22 -1.2
4,440,535 - Pf6N2E2_3811 0.22 -0.5
4,440,535 - Pf6N2E2_3811 0.22 -0.1
4,440,535 - Pf6N2E2_3811 0.22 -0.4
4,440,762 + Pf6N2E2_3811 0.34 +1.4
4,440,873 + Pf6N2E2_3811 0.40 -0.8
4,440,873 + Pf6N2E2_3811 0.40 +0.2
4,440,929 + Pf6N2E2_3811 0.43 -1.1
4,440,930 - Pf6N2E2_3811 0.43 -0.9
4,440,930 - Pf6N2E2_3811 0.43 -0.1
4,441,148 + Pf6N2E2_3811 0.55 +0.0
4,441,148 + Pf6N2E2_3811 0.55 -1.5
4,441,148 + Pf6N2E2_3811 0.55 +1.5
4,441,148 + Pf6N2E2_3811 0.55 -0.3
4,441,149 - Pf6N2E2_3811 0.55 -2.7
4,441,149 - Pf6N2E2_3811 0.55 +0.2
4,441,149 - Pf6N2E2_3811 0.55 +0.5
4,441,149 - Pf6N2E2_3811 0.55 -0.8
4,441,391 + Pf6N2E2_3811 0.68 -0.5
4,441,508 + Pf6N2E2_3811 0.74 -0.9
4,441,508 + Pf6N2E2_3811 0.74 -0.0
4,441,784 + Pf6N2E2_3811 0.89 -0.1
4,441,784 + Pf6N2E2_3811 0.89 -2.5
4,441,784 + Pf6N2E2_3811 0.89 +0.1
4,441,785 - Pf6N2E2_3811 0.89 -1.5
4,441,979 + -0.3
4,441,980 - +0.7
4,441,992 + +2.2
4,441,992 + +0.0
4,441,992 + +0.3
4,441,993 - -1.0
4,442,036 + +0.6
4,442,095 + -0.2
4,442,352 + Pf6N2E2_3812 0.41 +0.9
4,442,352 + Pf6N2E2_3812 0.41 -1.2
4,442,353 - Pf6N2E2_3812 0.41 +0.4
4,442,360 + Pf6N2E2_3812 0.42 +0.1
4,442,360 + Pf6N2E2_3812 0.42 -2.1
4,442,360 + Pf6N2E2_3812 0.42 -1.0
4,442,360 + Pf6N2E2_3812 0.42 -0.1
4,442,360 + Pf6N2E2_3812 0.42 -0.1
4,442,361 - Pf6N2E2_3812 0.42 -0.4
4,442,361 - Pf6N2E2_3812 0.42 -0.2
4,442,709 + -0.9
4,442,710 - -0.9
4,442,710 - -0.0
4,442,710 - -0.2
4,442,710 - -0.2

Or see this region's nucleotide sequence